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Cla97C08G158657 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C08G158657
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionSANT domain-containing protein
Genome locationCla97Chr08:25967855..25968231
RNA-Seq ExpressionCla97C08G158657
SyntenyCla97C08G158657
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065236.1 protein RADIALIS-like 4 [Cucumis melo var. makuwa]1.9e-3491.25Show/hide
Query:  MFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNYSKHYSYNNFLDEEQRQSLFLFLKL
        MFENALTVYDKDSPDRWQKLAR +GGKTA+EVKRHYEMLVEDVHNIETGK+PLPNYSKHYSYNNFLDEEQRQSL L L L
Subjt:  MFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNYSKHYSYNNFLDEEQRQSLFLFLKL

KAG7029384.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-3285.06Show/hide
Query:  SSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNYS---KHYSYNNFLDEEQRQ
        +SS+SWSSKQNK+FENALTVYDKDSPDRWQKLA  +GGKTAEEVKRHYEMLVEDVHNIETG++PLPNYS   KHYS N FLDEEQRQ
Subjt:  SSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNYS---KHYSYNNFLDEEQRQ

XP_008444713.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]4.9e-3891.21Show/hide
Query:  TSSSSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNYSKHYSYNNFLDEEQR
        +S++SSSSSSS+SWSSKQNKMFENALTVYDKDSPDRWQKLAR +GGKTA+EVKRHYEMLVEDVHNIETGK+PLPNYSKHYSYNNFLDEEQR
Subjt:  TSSSSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNYSKHYSYNNFLDEEQR

XP_031737271.1 protein RADIALIS-like 4 [Cucumis sativus]2.7e-3689.13Show/hide
Query:  TSSSSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNYSKHYSY-NNFLDEEQR
        +S++SSSSSSS+SWSSKQNKMFENALTVYDKDSPDRWQKLAR +GGKTA+EVKRHYEMLVEDVHNIETGK+PLPNYSKHYSY NNF+DEEQR
Subjt:  TSSSSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNYSKHYSY-NNFLDEEQR

XP_038886301.1 protein RADIALIS-like 3 [Benincasa hispida]2.4e-3790.22Show/hide
Query:  MTSSSSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNYSKHYSYNNFLDEEQR
        M SS+SSSSSSS+SWSSKQNKMFENALTVYDKDSPDRWQKLA  IGGKTAEEVK HY+MLVEDVHNIETG++PLPNYSKHYSYNNFLDEEQR
Subjt:  MTSSSSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNYSKHYSYNNFLDEEQR

TrEMBL top hitse value%identityAlignment
A0A0A0LNL9 SANT domain-containing protein2.8e-3988.78Show/hide
Query:  TSSSSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNYSKHYSY-NNFLDEEQRQSLFLF
        +S++SSSSSSS+SWSSKQNKMFENALTVYDKDSPDRWQKLAR +GGKTA+EVKRHYEMLVEDVHNIETGK+PLPNYSKHYSY NNF+DEEQRQSLF F
Subjt:  TSSSSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNYSKHYSY-NNFLDEEQRQSLFLF

A0A1S3BBR2 protein RADIALIS-like 42.4e-3891.21Show/hide
Query:  TSSSSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNYSKHYSYNNFLDEEQR
        +S++SSSSSSS+SWSSKQNKMFENALTVYDKDSPDRWQKLAR +GGKTA+EVKRHYEMLVEDVHNIETGK+PLPNYSKHYSYNNFLDEEQR
Subjt:  TSSSSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNYSKHYSYNNFLDEEQR

A0A5A7VFX7 Protein RADIALIS-like 49.3e-3591.25Show/hide
Query:  MFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNYSKHYSYNNFLDEEQRQSLFLFLKL
        MFENALTVYDKDSPDRWQKLAR +GGKTA+EVKRHYEMLVEDVHNIETGK+PLPNYSKHYSYNNFLDEEQRQSL L L L
Subjt:  MFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNYSKHYSYNNFLDEEQRQSLFLFLKL

A0A6J1K580 protein RADIALIS-like 42.5e-3283.7Show/hide
Query:  SSSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNY---SKHYSYNNFLDEEQR
        +SSSSSSSS+ WSSKQNK+FENALTVYDKDSPDRWQKLA  +GGKTAEEVKRHYEMLVEDVHNIETG++PLPNY   SKH S N FLDEEQR
Subjt:  SSSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNY---SKHYSYNNFLDEEQR

A0A6J1KQS6 protein RADIALIS-like 42.1e-3184.95Show/hide
Query:  SSSSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNY---SKHYSYNNFLDEEQR
        SSSSSSSSSS  WSSKQNK+FENALTVYDKDSPDRWQKLA  +GGKTAEEVKRHYEMLVEDVHNIE G+IPLPNY   SK Y Y+NFLDEEQR
Subjt:  SSSSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNY---SKHYSYNNFLDEEQR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 14.3e-2162.67Show/hide
Query:  SSSSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNY
        +SSS SS SS SW++KQNK FE AL  YD+D+P+RWQ +A+++GGKT EEVKRHYE+LV+D+++IE G +P PNY
Subjt:  SSSSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNY

Q1A173 Protein RADIALIS-like 62.5e-2157.65Show/hide
Query:  SSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNYSKHYSYNNFLDE
        +S+S SS + W+  QNKMFE AL VYDKD+PDRW  +A+ +GGKT EEVKRHY++LVED+ NIETG++PLPNY    S +  +++
Subjt:  SSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNYSKHYSYNNFLDE

Q1G3C4 Protein RADIALIS-like 41.2e-1858.33Show/hide
Query:  SSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNY
        +SSS S++SW+++++K FE AL  +DKD+PDRWQK+AR +GGK+ EEVKRHYE+L+ DV++IE+G+ P P Y
Subjt:  SSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNY

Q6NNN0 Protein RADIALIS-like 38.1e-2060.27Show/hide
Query:  SSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNY
        +S+S SSS SW+ K+NK+FE AL  YD+D+PDRW  +AR +GGK+AEEV+RHYE+L+ DV++IE+G+ P PNY
Subjt:  SSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNY

Q8GW75 Protein RADIALIS-like 51.5e-2168.49Show/hide
Query:  SSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNY
        +SSS SSS+SW+SKQNKMFE AL VYDKD+PDRWQ +A+ +G K+AEEVKRHY++LVED+ NIE   +PLP Y
Subjt:  SSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNY

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.1e-2268.49Show/hide
Query:  SSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNY
        +SSS SSS+SW+SKQNKMFE AL VYDKD+PDRWQ +A+ +G K+AEEVKRHY++LVED+ NIE   +PLP Y
Subjt:  SSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNY

AT1G75250.1 RAD-like 62.5e-2453.33Show/hide
Query:  SSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNY----SKHYSYNNFLDEEQRQSLFLFLK
        +S+S SS + W+  QNKMFE AL VYDKD+PDRW  +A+ +GGKT EEVKRHY++LVED+ NIETG++PLPNY    S   S N+F      + L++ L 
Subjt:  SSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNY----SKHYSYNNFLDEEQRQSLFLFLK

Query:  LYYRN
        +Y+ N
Subjt:  LYYRN

AT1G75250.2 RAD-like 61.8e-2257.65Show/hide
Query:  SSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNYSKHYSYNNFLDE
        +S+S SS + W+  QNKMFE AL VYDKD+PDRW  +A+ +GGKT EEVKRHY++LVED+ NIETG++PLPNY    S +  +++
Subjt:  SSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNYSKHYSYNNFLDE

AT2G18328.1 RAD-like 48.3e-2058.33Show/hide
Query:  SSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNY
        +SSS S++SW+++++K FE AL  +DKD+PDRWQK+AR +GGK+ EEVKRHYE+L+ DV++IE+G+ P P Y
Subjt:  SSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNY

AT4G39250.1 RAD-like 13.1e-2262.67Show/hide
Query:  SSSSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNY
        +SSS SS SS SW++KQNK FE AL  YD+D+P+RWQ +A+++GGKT EEVKRHYE+LV+D+++IE G +P PNY
Subjt:  SSSSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCATCTTCATCTTCATCTTCATCTTCATCTACAAGTTGGAGTTCAAAGCAAAACAAAATGTTTGAAAATGCTCTGACGGTTTACGACAAGGACTCACCCGACCG
GTGGCAAAAGTTGGCGAGAATTATCGGTGGAAAGACGGCAGAAGAAGTGAAAAGACACTACGAGATGTTGGTGGAGGACGTCCACAATATTGAGACCGGCAAAATTCCTT
TGCCCAATTACTCTAAACATTATTCCTACAACAACTTTCTTGATGAAGAACAAAGGCAATCTCTCTTTCTTTTCCTTAAACTTTATTATAGAAATGGGAATGGGAAGGAT
TGTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTTCATCTTCATCTTCATCTTCATCTTCATCTACAAGTTGGAGTTCAAAGCAAAACAAAATGTTTGAAAATGCTCTGACGGTTTACGACAAGGACTCACCCGACCG
GTGGCAAAAGTTGGCGAGAATTATCGGTGGAAAGACGGCAGAAGAAGTGAAAAGACACTACGAGATGTTGGTGGAGGACGTCCACAATATTGAGACCGGCAAAATTCCTT
TGCCCAATTACTCTAAACATTATTCCTACAACAACTTTCTTGATGAAGAACAAAGGCAATCTCTCTTTCTTTTCCTTAAACTTTATTATAGAAATGGGAATGGGAAGGAT
TGTAATTAA
Protein sequenceShow/hide protein sequence
MTSSSSSSSSSSTSWSSKQNKMFENALTVYDKDSPDRWQKLARIIGGKTAEEVKRHYEMLVEDVHNIETGKIPLPNYSKHYSYNNFLDEEQRQSLFLFLKLYYRNGNGKD
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