; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cla97C09G177155 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C09G177155
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionRetrotransposon protein
Genome locationCla97Chr09:26461474..26465303
RNA-Seq ExpressionCla97C09G177155
SyntenyCla97C09G177155
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046365.1 retrotransposon protein [Cucumis melo var. makuwa]6.7e-1639.34Show/hide
Query:  ELFKIRRGVSRYVNAILRTFLQLHTVLLKKPEPITNTCIDGRWKWFQ---------------------------------VHEVCDQNGEFVFVLLRWEG
        E  +    VSR+ N +L   ++LH  LLKKP+P+ N C+D RW+WF+                                 V  VCD  G+FV+VL  WEG
Subjt:  ELFKIRRGVSRYVNAILRTFLQLHTVLLKKPEPITNTCIDGRWKWFQ---------------------------------VHEVCDQNGEFVFVLLRWEG

Query:  FAVDSRVLRDAVLRPCGLRVPK
         A DSR+LRDA+ RP GL+VPK
Subjt:  FAVDSRVLRDAVLRPCGLRVPK

TYJ98193.1 retrotransposon protein [Cucumis melo var. makuwa]6.1e-1745.26Show/hide
Query:  ELFKIRRGVSRYVNAILRTFLQLHTVLLKKPEPITNTCIDGRWKWFQVHE----VCDQNGEFVFVLLRWEGFAVDSRVLRDAVLRPCGLRVPKVP
        E  ++   + RY N +L   ++ H  LLKKP+P+ N C + RW+WF+V      VCD  G+FV+VL  W+G  VDSR+LRD + R  GL+VP VP
Subjt:  ELFKIRRGVSRYVNAILRTFLQLHTVLLKKPEPITNTCIDGRWKWFQVHE----VCDQNGEFVFVLLRWEGFAVDSRVLRDAVLRPCGLRVPKVP

XP_008463037.1 PREDICTED: uncharacterized protein LOC103501276 [Cucumis melo]3.9e-1641.23Show/hide
Query:  VSRYVNAILRTFLQLHTVLLKKPEPITNTCIDGRWKWFQ---------------------------------VHEVCDQNGEFVFVLLRWEGFAVDSRVL
        VSR++N +L   L+LH +LLK+P+P+T++C   +W+WFQ                                 V  VC QNGE++FV+  WEG A DSRVL
Subjt:  VSRYVNAILRTFLQLHTVLLKKPEPITNTCIDGRWKWFQ---------------------------------VHEVCDQNGEFVFVLLRWEGFAVDSRVL

Query:  RDAVLRPCGLRVPK
        RD V RP GL+VPK
Subjt:  RDAVLRPCGLRVPK

XP_008467035.1 PREDICTED: uncharacterized protein LOC103504464, partial [Cucumis melo]6.7e-1639.34Show/hide
Query:  ELFKIRRGVSRYVNAILRTFLQLHTVLLKKPEPITNTCIDGRWKWFQ---------------------------------VHEVCDQNGEFVFVLLRWEG
        E  +    VSR+ N +L   ++LH  LLKKP+P+ N C+D RW+WF+                                 V  VCD  G+FV+VL  WEG
Subjt:  ELFKIRRGVSRYVNAILRTFLQLHTVLLKKPEPITNTCIDGRWKWFQ---------------------------------VHEVCDQNGEFVFVLLRWEG

Query:  FAVDSRVLRDAVLRPCGLRVPK
         A DSR+LRDA+ RP GL+VPK
Subjt:  FAVDSRVLRDAVLRPCGLRVPK

XP_042007520.1 uncharacterized protein LOC121756121 [Salvia splendens]1.8e-1644.54Show/hide
Query:  FKIRRGVSRYVNAILRTFLQLHTVLLKKPEPITNTCIDGRWKWFQ---------------------------------VHEVCDQNGEFVFVLLRWEGFA
        F+    VS YVN +L   L LHTVLL KP+P+T+ CID RWKWF+                                    VCD+N +FV+ L  WEG A
Subjt:  FKIRRGVSRYVNAILRTFLQLHTVLLKKPEPITNTCIDGRWKWFQ---------------------------------VHEVCDQNGEFVFVLLRWEGFA

Query:  VDSRVLRDAVLRPCGLRVP
         DSRVLRDAV RP GLRVP
Subjt:  VDSRVLRDAVLRPCGLRVP

TrEMBL top hitse value%identityAlignment
A0A1S3CJV8 uncharacterized protein LOC1035012761.9e-1641.23Show/hide
Query:  VSRYVNAILRTFLQLHTVLLKKPEPITNTCIDGRWKWFQ---------------------------------VHEVCDQNGEFVFVLLRWEGFAVDSRVL
        VSR++N +L   L+LH +LLK+P+P+T++C   +W+WFQ                                 V  VC QNGE++FV+  WEG A DSRVL
Subjt:  VSRYVNAILRTFLQLHTVLLKKPEPITNTCIDGRWKWFQ---------------------------------VHEVCDQNGEFVFVLLRWEGFAVDSRVL

Query:  RDAVLRPCGLRVPK
        RD V RP GL+VPK
Subjt:  RDAVLRPCGLRVPK

A0A1S3CSL6 uncharacterized protein LOC1035044643.3e-1639.34Show/hide
Query:  ELFKIRRGVSRYVNAILRTFLQLHTVLLKKPEPITNTCIDGRWKWFQ---------------------------------VHEVCDQNGEFVFVLLRWEG
        E  +    VSR+ N +L   ++LH  LLKKP+P+ N C+D RW+WF+                                 V  VCD  G+FV+VL  WEG
Subjt:  ELFKIRRGVSRYVNAILRTFLQLHTVLLKKPEPITNTCIDGRWKWFQ---------------------------------VHEVCDQNGEFVFVLLRWEG

Query:  FAVDSRVLRDAVLRPCGLRVPK
         A DSR+LRDA+ RP GL+VPK
Subjt:  FAVDSRVLRDAVLRPCGLRVPK

A0A5D3BG20 Retrotransposon protein2.9e-1745.26Show/hide
Query:  ELFKIRRGVSRYVNAILRTFLQLHTVLLKKPEPITNTCIDGRWKWFQVHE----VCDQNGEFVFVLLRWEGFAVDSRVLRDAVLRPCGLRVPKVP
        E  ++   + RY N +L   ++ H  LLKKP+P+ N C + RW+WF+V      VCD  G+FV+VL  W+G  VDSR+LRD + R  GL+VP VP
Subjt:  ELFKIRRGVSRYVNAILRTFLQLHTVLLKKPEPITNTCIDGRWKWFQVHE----VCDQNGEFVFVLLRWEGFAVDSRVLRDAVLRPCGLRVPKVP

A0A5D3CKE3 Retrotransposon protein5.6e-1637.7Show/hide
Query:  ELFKIRRGVSRYVNAILRTFLQLHTVLLKKPEPITNTCIDGRWKWFQ---------------------------------VHEVCDQNGEFVFVLLRWEG
        E  ++   +SR+ N +L   ++LH  LLKKP+P+ N C D RW+WF+                                 V  VCD  G+F++VL  WEG
Subjt:  ELFKIRRGVSRYVNAILRTFLQLHTVLLKKPEPITNTCIDGRWKWFQ---------------------------------VHEVCDQNGEFVFVLLRWEG

Query:  FAVDSRVLRDAVLRPCGLRVPK
         A DSR+LRDA+ RP GL+VPK
Subjt:  FAVDSRVLRDAVLRPCGLRVPK

A0A5D3E449 Retrotransposon protein3.3e-1639.34Show/hide
Query:  ELFKIRRGVSRYVNAILRTFLQLHTVLLKKPEPITNTCIDGRWKWFQ---------------------------------VHEVCDQNGEFVFVLLRWEG
        E  +    VSR+ N +L   ++LH  LLKKP+P+ N C+D RW+WF+                                 V  VCD  G+FV+VL  WEG
Subjt:  ELFKIRRGVSRYVNAILRTFLQLHTVLLKKPEPITNTCIDGRWKWFQ---------------------------------VHEVCDQNGEFVFVLLRWEG

Query:  FAVDSRVLRDAVLRPCGLRVPK
         A DSR+LRDA+ RP GL+VPK
Subjt:  FAVDSRVLRDAVLRPCGLRVPK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGGACATCGAAGAGATGGTAGCAATATTCCTACACATTCTTGCACACGATGTCAAAAATCAAGTGGTACGGAGGAACTTTTCAAGATCCGGCGAGGGGTCTCGAG
ATATGTCAACGCAATTCTTAGGACATTTTTACAACTTCACACTGTTTTGTTGAAAAAACCGGAACCAATCACAAACACATGCATCGATGGAAGGTGGAAGTGGTTTCAGG
TACATGAAGTGTGTGATCAAAATGGGGAGTTCGTCTTCGTTTTGCTGAGGTGGGAAGGGTTTGCAGTCGATTCAAGGGTTCTTAGGGATGCGGTTTTGCGACCTTGCGGA
TTGAGAGTTCCAAAGGTCCCTCTCTTCTGTCGCCTTCTCTCCTTCATTCATTTCCACCAATCTTCCTCTTCCGCGTTCATTCCTTCTCCTTCTCTCTATTACCCTTCATC
TTCCGCAGACTGCCTTTTCTCTCATCTTCTCTCATGTCTCGGCTCTTCTTCCTCATTCACTTCTATAGACCCTTCTTCTCCCACTTCTCTCTTCTGCCCTTCGTCTTCCC
CATTCATTATTTGCTCTAAAGCGTTAATCAATGCTTCAGAGAAGACAAGATGGGATGTCGAAGCCCTCTCTTGCCGCTCTAATAGTAGGAATGGTGGCTCTTGCCACTGT
CGAGAGCTTGGTAGGTGGTCCCGTTACACCAGTTTGAGCTTTGGTACGGGAGGGCTCCTCTCGAAGGTGAGTATGTGA
mRNA sequenceShow/hide mRNA sequence
GTAAAATGCTTTACTAACGGTTTTCTTACTCTTATCAGATAATACCTTTGGCCTCCTCCATACGTTTTGCCTTACACTTCGATTGCGAATTTTGAACATTAAAAAAAGGT
TCCAAACTAATTAGGCAAACCATTCGTAATTAGTTTGAGGAACAACTTGTGTATCTCATTCCCTATAAAGATGAATATCGTTGAAGAACTTTTTTAGATCATGACAATTA
TTTCGAACTCTCAAATCCAGCTGTTCATAACATTAACCACATTGTTGAACAACTACCGAAGGATAGAGAGACAACCATCATATGCTAGGCACTGCATTAGGCAGTTGACC
TTCTTCTGCCTCATTTACGAGAGTGACTTGGCATGTCGTGAAAGCACCCGAATGAATACACATACCTTTACGATTTTATGTAATATGGTACGGTCGACTGGTTGTTTGGA
ACCAACAAGATGTGTGGACATCGAAGAGATGGTAGCAATATTCCTACACATTCTTGCACACGATGTCAAAAATCAAGTGGTACGGAGGAACTTTTCAAGATCCGGCGAGG
GGTCTCGAGATATGTCAACGCAATTCTTAGGACATTTTTACAACTTCACACTGTTTTGTTGAAAAAACCGGAACCAATCACAAACACATGCATCGATGGAAGGTGGAAGT
GGTTTCAGGTACATGAAGTGTGTGATCAAAATGGGGAGTTCGTCTTCGTTTTGCTGAGGTGGGAAGGGTTTGCAGTCGATTCAAGGGTTCTTAGGGATGCGGTTTTGCGA
CCTTGCGGATTGAGAGTTCCAAAGGTCCCTCTCTTCTGTCGCCTTCTCTCCTTCATTCATTTCCACCAATCTTCCTCTTCCGCGTTCATTCCTTCTCCTTCTCTCTATTA
CCCTTCATCTTCCGCAGACTGCCTTTTCTCTCATCTTCTCTCATGTCTCGGCTCTTCTTCCTCATTCACTTCTATAGACCCTTCTTCTCCCACTTCTCTCTTCTGCCCTT
CGTCTTCCCCATTCATTATTTGCTCTAAAGCGTTAATCAATGCTTCAGAGAAGACAAGATGGGATGTCGAAGCCCTCTCTTGCCGCTCTAATAGTAGGAATGGTGGCTCT
TGCCACTGTCGAGAGCTTGGTAGGTGGTCCCGTTACACCAGTTTGAGCTTTGGTACGGGAGGGCTCCTCTCGAAGGTGAGTATGTGA
Protein sequenceShow/hide protein sequence
MCGHRRDGSNIPTHSCTRCQKSSGTEELFKIRRGVSRYVNAILRTFLQLHTVLLKKPEPITNTCIDGRWKWFQVHEVCDQNGEFVFVLLRWEGFAVDSRVLRDAVLRPCG
LRVPKVPLFCRLLSFIHFHQSSSSAFIPSPSLYYPSSSADCLFSHLLSCLGSSSSFTSIDPSSPTSLFCPSSSPFIICSKALINASEKTRWDVEALSCRSNSRNGGSCHC
RELGRWSRYTSLSFGTGGLLSKVSM