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Cla97C10G190040 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C10G190040
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionSNW/SKI-interacting protein-like
Genome locationCla97Chr10:6605509..6607496
RNA-Seq ExpressionCla97C10G190040
SyntenyCla97C10G190040
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149509.1 SNW/SKI-interacting protein [Cucumis sativus]1.5e-0976.09Show/hide
Query:  MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP
        MATLKD LPAVKSTT+ H  HSNDPW KQRFSSS  EQT V+K NP
Subjt:  MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP
XP_008451180.1 PREDICTED: SNW/SKI-interacting protein-like [Cucumis melo]1.5e-0976.09Show/hide
Query:  MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP
        MATLKD LPAVKSTT+ H  HSNDPW KQRFSSS  EQT V+K NP
Subjt:  MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP
XP_008458692.1 PREDICTED: SNW/SKI-interacting protein-like [Cucumis melo]1.5e-0978.26Show/hide
Query:  MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP
        MATLKD LPAVKS T+ H  HSNDPW KQRFSSS  EQT VVKANP
Subjt:  MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP
XP_022929698.1 SNW/SKI-interacting protein A-like [Cucurbita moschata]1.5e-0978.26Show/hide
Query:  MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP
        MATLKD LPAVKSTT+ H  HS+DPW KQRFSSS  EQT VVKANP
Subjt:  MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP
XP_031736674.1 SNW/SKI-interacting protein [Cucumis sativus]4.0e-1080.43Show/hide
Query:  MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP
        MATLKD LPAVKSTT+ H  HSNDPW KQRFSSS  EQT VVKANP
Subjt:  MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP
TrEMBL top hitse value%identityAlignment
A0A0A0LIR8 SKIP_SNW domain-containing protein1.9e-1080.43Show/hide
Query:  MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP
        MATLKD LPAVKSTT+ H  HSNDPW KQRFSSS  EQT VVKANP
Subjt:  MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP
A0A0A0LKC1 SKIP_SNW domain-containing protein7.4e-1076.09Show/hide
Query:  MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP
        MATLKD LPAVKSTT+ H  HSNDPW KQRFSSS  EQT V+K NP
Subjt:  MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP
A0A1S4E1T1 SNW/SKI-interacting protein-like7.4e-1078.26Show/hide
Query:  MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP
        MATLKD LPAVKS T+ H  HSNDPW KQRFSSS  EQT VVKANP
Subjt:  MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP
A0A5D3BV89 SNW/SKI-interacting protein-like7.4e-1076.09Show/hide
Query:  MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP
        MATLKD LPAVKSTT+ H  HSNDPW KQRFSSS  EQT V+K NP
Subjt:  MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP
A0A5D3CHM8 SNW/SKI-interacting protein-like7.4e-1078.26Show/hide
Query:  MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP
        MATLKD LPAVKS T+ H  HSNDPW KQRFSSS  EQT VVKANP
Subjt:  MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G77180.1 chromatin protein family1.6e-0445.24Show/hide
Query:  MATLKDLPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVK
        M +L DLPA KSTT  +  HSND W K R + S   ++  +K
Subjt:  MATLKDLPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVK
AT1G77180.2 chromatin protein family1.6e-0445.24Show/hide
Query:  MATLKDLPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVK
        M +L DLPA KSTT  +  HSND W K R + S   ++  +K
Subjt:  MATLKDLPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVK
AT1G77180.3 chromatin protein family1.6e-0445.24Show/hide
Query:  MATLKDLPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVK
        M +L DLPA KSTT  +  HSND W K R + S   ++  +K
Subjt:  MATLKDLPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGCCCAACCATACGATATATTGTACATAGTAGGCAGCCTTGTGCCAATAGTGGCTGTGCAGGGTTCTATTGGGTAGCCAAAATTATGGCAACTCTGAAA
GACCTTCCTGCTGTAAAGTCAACAACCATGGCACACGATGGTCACTCAAATGATCCATGGTTGAAGCAGCGGTTTAGTTCATCGGGAGTAGAGCAAACTTGTGTC
GTTAAGGCCAATCCTGGGCTTTGTTCCACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCGCCCAACCATACGATATATTGTACATAGTAGGCAGCCTTGTGCCAATAGTGGCTGTGCAGGGTTCTATTGGGTAGCCAAAATTATGGCAACTCTGAAA
GACCTTCCTGCTGTAAAGTCAACAACCATGGCACACGATGGTCACTCAAATGATCCATGGTTGAAGCAGCGGTTTAGTTCATCGGGAGTAGAGCAAACTTGTGTC
GTTAAGGCCAATCCTGGGCTTTGTTCCACTTGA
Protein sequenceShow/hide protein sequence
MPRPTIRYIVHSRQPCANSGCAGFYWVAKIMATLKDLPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANPGLCST