CuGenDBv2

Gene ID	Cla97C10G190130
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	DNA-directed RNA polymerase subunit beta'
Genome location	Cla97Chr10:7206204..7207127
RNA-Seq Expression	Cla97C10G190130
Synteny	Cla97C10G190130
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AHM88912.1 RNA polymerase beta [Lagenaria siceraria]

7.1e-27

100

Show/hide

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL

AHM88970.1 RNA polymerase beta [Lagenaria siceraria]

7.1e-27

100

Show/hide

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL

ASY96794.1 RNA polymerase beta' subunit [Cucumis melo var. momordica]

7.1e-27

100

Show/hide

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL

YP_009336261.1 RNA polymerase beta' subunit [Ulmus pumila]

7.1e-27

100

Show/hide

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL

YP_247590.2 RNA polymerase beta' subunit [Cucumis sativus]

7.1e-27

100

Show/hide

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LE65 DNA-directed RNA polymerase subunit gamma

3.4e-27

100

Show/hide

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL

A0A1X9Q1T5 DNA-directed RNA polymerase subunit beta'

3.4e-27

100

Show/hide

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL

A0A218KG20 DNA-directed RNA polymerase subunit beta'

3.4e-27

100

Show/hide

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL

A0A249RZJ2 DNA-directed RNA polymerase subunit beta'

3.4e-27

100

Show/hide

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL

A0A6M3S6B8 DNA-directed RNA polymerase subunit beta'

3.4e-27

100

Show/hide

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL

SwissProt top hits

e value

%identity

Alignment

B1A926 DNA-directed RNA polymerase subunit beta'

1.1e-27

90.32

Show/hide

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
        GFDTFRNREISTGAGAIREQLADLDL++IIDYS +EWKELGEEGP GNEWEDRK+GRRKDFL
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL

Q0G9X1 DNA-directed RNA polymerase subunit beta'

1.1e-27

93.55

Show/hide

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
        GFDTFRNREISTGAGAIREQLADLDLR+IID SLVEWKELGE+GP GNEWEDRKVGRRKDFL
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL

Q0ZJ29 DNA-directed RNA polymerase subunit beta'

3.0e-28

93.55

Show/hide

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
        GFDTFRNREISTGAGAIREQL DLDLR+IIDYSLVEWKELGEEGP GNEWEDRK+GRRKDFL
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL

Q49L07 DNA-directed RNA polymerase subunit beta'

5.1e-28

93.55

Show/hide

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
        GFDTFRNREISTGAGAIREQLADLDLR+IIDYSLVEWKELGEE P GNEWEDRK+GRRKDFL
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL

Q4VZP2 DNA-directed RNA polymerase subunit beta'

9.3e-30

100

Show/hide

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00180.1 DNA-directed RNA polymerase family protein

1.7e-26

87.1

Show/hide

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL
        GFD FRNREISTGAGAIREQLADLDLR+II+ SLVEWK+LGEEGP GNEWEDRK+ RRKDFL
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTGTTTGTTCTAGCAGTCAGATCTTTCATCTTTTTTTCTCTCAATGAAAAATTTGTCCAATCCATAGACCGAGTTCTTTACAGGGGGAGGCGGGGTAATCCGCACCA
AGACCATGACCGCTATAATGCACCTGCCAATATATCTCGCGGTAACAAAAATGTATTGTTCTCAGGCTTCGATACATTTCGAAATCGAGAAATTTCTACCGGAGCAGGTG
CTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCCTTGGTAGAATGGAAAGAATTAGGCGAAGAAGGACCCGCGGGTAATGAATGGGAAGAT
CGAAAAGTTGGAAGAAGAAAGGATTTTTTG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVFVLAVRSFIFFSLNEKFVQSIDRVLYRGRRGNPHQDHDRYNAPANISRGNKNVLFSGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED
RKVGRRKDFL

Cla97C10G190130 (gene) of Watermelon (97103) v2.5 genome