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Cla97C10G190950 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C10G190950
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionTy3-gypsy retrotransposon protein
Genome locationCla97Chr10:9662273..9670037
RNA-Seq ExpressionCla97C10G190950
SyntenyCla97C10G190950
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650189.1 hypothetical protein Csa_011006, partial [Cucumis sativus]1.4e-1683.33Show/hide
Query:  MSRNLSCRSSDFVLFSASLSLLFVSALSDDSSNKASIKSGNHPSSSSNTGSMVAIILFGILVVVLLSFFLFK
        MSRN S R SDF+ FSASLSLLFVSALSDDSS K S  SGNHPSS S+TGSMVAIIL GILVVVLLSFFLFK
Subjt:  MSRNLSCRSSDFVLFSASLSLLFVSALSDDSSNKASIKSGNHPSSSSNTGSMVAIILFGILVVVLLSFFLFK

KAG7015450.1 hypothetical protein SDJN02_23086, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-1581.94Show/hide
Query:  MSRNLSCRSSDFVLFSASLSLLFVSALSDDSSNKASIKSGNHPSSSSNTGSMVAIILFGILVVVLLSFFLFK
        MSRNLS RSSD V  SASLSLLFVSALS+DSS K SI SG H SSSS TGSMVAIIL G LVVVLLSFFLFK
Subjt:  MSRNLSCRSSDFVLFSASLSLLFVSALSDDSSNKASIKSGNHPSSSSNTGSMVAIILFGILVVVLLSFFLFK

KAG7031355.1 hypothetical protein SDJN02_05395 [Cucurbita argyrosperma subsp. argyrosperma]2.7e-1580.56Show/hide
Query:  MSRNLSCRSSDFVLFSASLSLLFVSALSDDSSNKASIKSGNHPSSSSNTGSMVAIILFGILVVVLLSFFLFK
        MS NLS RSSDF+ FSA LSLLFVSALSDDS+ K SIKSGNHPSS SNT SM+AIIL G+LVVV LSFFLFK
Subjt:  MSRNLSCRSSDFVLFSASLSLLFVSALSDDSSNKASIKSGNHPSSSSNTGSMVAIILFGILVVVLLSFFLFK

XP_016901207.1 PREDICTED: uncharacterized protein LOC103493315 [Cucumis melo]4.5e-1886.11Show/hide
Query:  MSRNLSCRSSDFVLFSASLSLLFVSALSDDSSNKASIKSGNHPSSSSNTGSMVAIILFGILVVVLLSFFLFK
        MSRNLS R SDF+ FSASLSLLFVSALSDDSS K SI SGNHPSS SNTGSMVAIIL GILV VLLSFFLFK
Subjt:  MSRNLSCRSSDFVLFSASLSLLFVSALSDDSSNKASIKSGNHPSSSSNTGSMVAIILFGILVVVLLSFFLFK

XP_022929545.1 uncharacterized protein LOC111436082 [Cucurbita moschata]2.1e-1581.94Show/hide
Query:  MSRNLSCRSSDFVLFSASLSLLFVSALSDDSSNKASIKSGNHPSSSSNTGSMVAIILFGILVVVLLSFFLFK
        MSRNLS RSSD V  SASLSLLFVSALS+DSS K SI SG H SSSS TGSMVAIIL G LVVVLLSFFLFK
Subjt:  MSRNLSCRSSDFVLFSASLSLLFVSALSDDSSNKASIKSGNHPSSSSNTGSMVAIILFGILVVVLLSFFLFK

TrEMBL top hitse value%identityAlignment
A0A0A0L5F0 Uncharacterized protein7.0e-1783.33Show/hide
Query:  MSRNLSCRSSDFVLFSASLSLLFVSALSDDSSNKASIKSGNHPSSSSNTGSMVAIILFGILVVVLLSFFLFK
        MSRN S R SDF+ FSASLSLLFVSALSDDSS K S  SGNHPSS S+TGSMVAIIL GILVVVLLSFFLFK
Subjt:  MSRNLSCRSSDFVLFSASLSLLFVSALSDDSSNKASIKSGNHPSSSSNTGSMVAIILFGILVVVLLSFFLFK

A0A1S4DZ07 uncharacterized protein LOC1034933152.2e-1886.11Show/hide
Query:  MSRNLSCRSSDFVLFSASLSLLFVSALSDDSSNKASIKSGNHPSSSSNTGSMVAIILFGILVVVLLSFFLFK
        MSRNLS R SDF+ FSASLSLLFVSALSDDSS K SI SGNHPSS SNTGSMVAIIL GILV VLLSFFLFK
Subjt:  MSRNLSCRSSDFVLFSASLSLLFVSALSDDSSNKASIKSGNHPSSSSNTGSMVAIILFGILVVVLLSFFLFK

A0A5D3BSE1 Ty3-gypsy retrotransposon protein2.1e-1363.64Show/hide
Query:  MTSKKATSKTPVASDTYTGPITRSLSKGVMREKEQGSAITENIWRRLIESSKGGIVIKENPLFDSS
        M SKKATSK+ VASD YTGPIT SLSKG+ +E++QGS+I ++I ++L+ES K GIV+KEN L+D+S
Subjt:  MTSKKATSKTPVASDTYTGPITRSLSKGVMREKEQGSAITENIWRRLIESSKGGIVIKENPLFDSS

A0A6J1EUP1 uncharacterized protein LOC1114360821.0e-1581.94Show/hide
Query:  MSRNLSCRSSDFVLFSASLSLLFVSALSDDSSNKASIKSGNHPSSSSNTGSMVAIILFGILVVVLLSFFLFK
        MSRNLS RSSD V  SASLSLLFVSALS+DSS K SI SG H SSSS TGSMVAIIL G LVVVLLSFFLFK
Subjt:  MSRNLSCRSSDFVLFSASLSLLFVSALSDDSSNKASIKSGNHPSSSSNTGSMVAIILFGILVVVLLSFFLFK

A0A6J1J6C2 uncharacterized protein LOC1114829871.0e-1581.94Show/hide
Query:  MSRNLSCRSSDFVLFSASLSLLFVSALSDDSSNKASIKSGNHPSSSSNTGSMVAIILFGILVVVLLSFFLFK
        MSRNLS RSSD V  SASLSLLFVSALS+DSS K SI SG H SSSS TGSMVAIIL G LVVVLLSFFLFK
Subjt:  MSRNLSCRSSDFVLFSASLSLLFVSALSDDSSNKASIKSGNHPSSSSNTGSMVAIILFGILVVVLLSFFLFK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGAAATTTGAGTTGCAGATCGTCTGATTTCGTGTTGTTTTCGGCTTCGCTTTCCCTACTTTTCGTCTCCGCCCTTTCTGATGATTCCAGTAACAAAGCTAGTAT
TAAATCTGGGAATCATCCATCCTCCAGCAGCAACACTGGCTCGATGGTTGCCATCATCCTCTTTGGGATTTTGGTAGTTGTGTTATTATCATTTTTCCTTTTCAAATCAC
TGAAGTTTGGCTCAGAAACCATTATGTTGGAATTATTGCATTACAAATGTCTAAAAGATCGTGAGATGATAAAATGGGGCAGGTATGCAAAGAGACCACAGACGGACGAA
AGCATTAGTAATGGGACGTCTCTACTCTCATCTTTCTCTCAACAATCAAATCAAGCAATGACCTCCAAGAAAGCTACGTCCAAAACCCCTGTTGCAAGCGACACCTACAC
AGGACCCATCACTCGTAGTCTCTCAAAGGGGGTCATGCGAGAGAAGGAACAAGGTTCTGCCATCACGGAGAATATTTGGAGGCGATTGATAGAATCTTCTAAAGGGGGGA
TCGTCATTAAAGAAAATCCTTTGTTTGACAGCTCCGCTCCTACTCCTGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAGAAATTTGAGTTGCAGATCGTCTGATTTCGTGTTGTTTTCGGCTTCGCTTTCCCTACTTTTCGTCTCCGCCCTTTCTGATGATTCCAGTAACAAAGCTAGTAT
TAAATCTGGGAATCATCCATCCTCCAGCAGCAACACTGGCTCGATGGTTGCCATCATCCTCTTTGGGATTTTGGTAGTTGTGTTATTATCATTTTTCCTTTTCAAATCAC
TGAAGTTTGGCTCAGAAACCATTATGTTGGAATTATTGCATTACAAATGTCTAAAAGATCGTGAGATGATAAAATGGGGCAGGTATGCAAAGAGACCACAGACGGACGAA
AGCATTAGTAATGGGACGTCTCTACTCTCATCTTTCTCTCAACAATCAAATCAAGCAATGACCTCCAAGAAAGCTACGTCCAAAACCCCTGTTGCAAGCGACACCTACAC
AGGACCCATCACTCGTAGTCTCTCAAAGGGGGTCATGCGAGAGAAGGAACAAGGTTCTGCCATCACGGAGAATATTTGGAGGCGATTGATAGAATCTTCTAAAGGGGGGA
TCGTCATTAAAGAAAATCCTTTGTTTGACAGCTCCGCTCCTACTCCTGACTGA
Protein sequenceShow/hide protein sequence
MSRNLSCRSSDFVLFSASLSLLFVSALSDDSSNKASIKSGNHPSSSSNTGSMVAIILFGILVVVLLSFFLFKSLKFGSETIMLELLHYKCLKDREMIKWGRYAKRPQTDE
SISNGTSLLSSFSQQSNQAMTSKKATSKTPVASDTYTGPITRSLSKGVMREKEQGSAITENIWRRLIESSKGGIVIKENPLFDSSAPTPD