; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cla97C10G191160 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C10G191160
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionDNA-directed RNA polymerase subunit beta''
Genome locationCla97Chr10:10316413..10319138
RNA-Seq ExpressionCla97C10G191160
SyntenyCla97C10G191160
Gene Ontology termsGO:0015986 - ATP synthesis coupled proton transport (biological process)
GO:0006351 - transcription, DNA-templated (biological process)
GO:0006412 - translation (biological process)
GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component)
GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005743 - mitochondrial inner membrane (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
GO:0000287 - magnesium ion binding (molecular function)
InterPro domainsIPR042102 - RNA polymerase Rpb1, domain 3 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QCE13735.1 DNA-directed RNA polymerase subunit beta' [Vigna unguiculata]1.5e-5091.6Show/hide
Query:  SVKTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDD
        S +TI PEFL ESRSRKGSF IIDSN LSNPTQRN EVLMAERA+LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGF+QATATSISLGIDD
Subjt:  SVKTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDD

Query:  LLTIPSKGWLVQDAEQQSF
        LLTIPSKGWLVQDAEQQSF
Subjt:  LLTIPSKGWLVQDAEQQSF

QJS52311.1 RNA polymerase beta'' subunit [Indofevillea khasiana]7.7e-5595.04Show/hide
Query:  LSLSVKTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG
        LS S +TIGPEFLRESRSRKGSF +IDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLG
Subjt:  LSLSVKTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG

Query:  IDDLLTIPSKGWLVQDAEQQS
        IDDLLTIPSKGWLVQDAEQQS
Subjt:  IDDLLTIPSKGWLVQDAEQQS

QWQ50133.1 RNA polymerase beta'' subunit [Cyclanthera pedata]9.1e-5695.08Show/hide
Query:  LSLSVKTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG
        LS S +T+GPEFLRESRSRKGSF IIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLG
Subjt:  LSLSVKTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG

Query:  IDDLLTIPSKGWLVQDAEQQSF
        IDDLLTIPSKGWLVQDAEQQSF
Subjt:  IDDLLTIPSKGWLVQDAEQQSF

YP_009525176.1 RNA polymerase beta subunit [Hodgsonia macrocarpa]4.5e-5595.87Show/hide
Query:  LSLSVKTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG
        LS S +TIGPEFLRESRSRKGSF IIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLG
Subjt:  LSLSVKTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG

Query:  IDDLLTIPSKGWLVQDAEQQS
        IDDLLTIPSKGWLVQDAEQQS
Subjt:  IDDLLTIPSKGWLVQDAEQQS

YP_010131084.1 RNA polymerase beta'' subunit [Benincasa hispida]4.1e-5697.52Show/hide
Query:  LSLSVKTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG
        LS S +TIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG
Subjt:  LSLSVKTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG

Query:  IDDLLTIPSKGWLVQDAEQQS
        IDDLLTIPSKGWLVQDAEQQS
Subjt:  IDDLLTIPSKGWLVQDAEQQS

TrEMBL top hitse value%identityAlignment
A0A346QNZ0 DNA-directed RNA polymerase subunit beta''2.2e-5595.87Show/hide
Query:  LSLSVKTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG
        LS S +TIGPEFLRESRSRKGSF IIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLG
Subjt:  LSLSVKTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG

Query:  IDDLLTIPSKGWLVQDAEQQS
        IDDLLTIPSKGWLVQDAEQQS
Subjt:  IDDLLTIPSKGWLVQDAEQQS

A0A4D6NNC8 Multifunctional fusion protein7.3e-5191.6Show/hide
Query:  SVKTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDD
        S +TI PEFL ESRSRKGSF IIDSN LSNPTQRN EVLMAERA+LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGF+QATATSISLGIDD
Subjt:  SVKTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDD

Query:  LLTIPSKGWLVQDAEQQSF
        LLTIPSKGWLVQDAEQQSF
Subjt:  LLTIPSKGWLVQDAEQQSF

A0A6M4SPN7 DNA-directed RNA polymerase subunit beta''3.7e-5595.04Show/hide
Query:  LSLSVKTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG
        LS S +TIGPEFLRESRSRKGSF +IDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLG
Subjt:  LSLSVKTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG

Query:  IDDLLTIPSKGWLVQDAEQQS
        IDDLLTIPSKGWLVQDAEQQS
Subjt:  IDDLLTIPSKGWLVQDAEQQS

A0A7J7M9Q4 DNA-directed RNA polymerase subunit2.8e-5089.92Show/hide
Query:  SVKTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDD
        S   I PEFL ESRSRKGS  I DSNLLSNPT RNMEVLMAERADLVFHNK IDGTA+KRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDD
Subjt:  SVKTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDD

Query:  LLTIPSKGWLVQDAEQQSF
        LLTIPSKGWLVQDAEQQSF
Subjt:  LLTIPSKGWLVQDAEQQSF

A0A7T3QNJ7 RNA polymerase beta'' subunit2.0e-5697.52Show/hide
Query:  LSLSVKTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG
        LS S +TIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG
Subjt:  LSLSVKTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG

Query:  IDDLLTIPSKGWLVQDAEQQS
        IDDLLTIPSKGWLVQDAEQQS
Subjt:  IDDLLTIPSKGWLVQDAEQQS

SwissProt top hitse value%identityAlignment
A8SE78 DNA-directed RNA polymerase subunit beta''2.3e-3892.05Show/hide
Query:  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSFNSSK
        MEVLMAERADLVFHNK IDGTA+KRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS    K
Subjt:  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSFNSSK

Q06H07 DNA-directed RNA polymerase subunit beta''3.1e-3896.39Show/hide
Query:  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS
        MEVLMAERADLVFHNKVIDGTA+KRLISRLIDHFGMAYTSHILDQ+KT+GFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS
Subjt:  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS

Q3V544 DNA-directed RNA polymerase subunit beta''5.2e-3894.05Show/hide
Query:  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSF
        MEVLMAERADLV+HNK IDGTA+KRLISRLIDHFGMAYTSHILDQ+KTLGF+QATATSISLGIDDLLTIPSKGWLVQDAEQQSF
Subjt:  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSF

Q4VZP3 DNA-directed RNA polymerase subunit beta''3.6e-39100Show/hide
Query:  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS
        MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS
Subjt:  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS

Q9THV5 DNA-directed RNA polymerase subunit beta''3.1e-3897.59Show/hide
Query:  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS
        MEVLMAERA+LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS
Subjt:  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS

Arabidopsis top hitse value%identityAlignment
ATCG00170.1 DNA-directed RNA polymerase family protein1.6e-3796.25Show/hide
Query:  MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSF
        MAERA+LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS+
Subjt:  MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGAGATAATACTAATATTCTCCCCCTTGATCCCAAGATTGAAAGGACGTGTAGAGGAAACCTAAGGGTTCAAGCCCGAATAAACTGCAAGGGTGCGGCGACCAG
GGCCGCCTCTCCATTCTTTGATTGCCTTAGCTTGTCAGTCAAGACCATAGGTCCTGAATTTCTACGCGAATCAAGATCGAGAAAAGGAAGTTTTCTAATCATTGACTCAA
ACCTATTGTCGAACCCCACTCAGCGTAATATGGAGGTACTTATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATT
AGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGA
TGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTCAATAGCTCAAAGAAAGTCTCGTCCCGACCTGGGGTTGGCTTGAGAAGGA
GAGTCTCGCCGGTTGTTAACAAAGCGGCATGCAAGGAAGCAAAGATGAACCGGCTTGGGGGGAATAAAGAATCTGAATTGGAGGGTGGGTCCTTAACACCAAACTACTGC
TCCATAGCAAGCAGCGCGAGAGCTCTGAACTTTCATTCAAACTTACTGGAAAAACTCCTGCTCTTTTCAATATTCCTTCCTTGGGAAACTTTCAAACTGTCCGTCAGCCC
GCTTTTAAACTGGCTTGCTATAACCCGCTTTCCTAAGCTAAGAGCTAGTACAAGAAAGTGGAGGCTCGATGAACGGCCTAAAAAGTCCAGGTATCTCGTTGTAATCCCAA
GCTTGCAATCCCTAAACTCCTTGAGTAGCCCTCTTTCTGAAGAGCAGTTGACCGTGCTACTCATTCATTCTGCCAAGGGTGGTCAGAAGCCGCCGAAGAAGAAGGGTAAT
TCTTCCAAGGCAACAACCAAGAAGACGGACAAGGCCAGTCATGGGCCTGATGAGTCGAATTCCTACTTCAAGGAGGGGTCACAGTATGCGCATTCCCCGTATTCTATGTC
CGCCTATTCCACCGGAACCATATTAGCCAGGGGAGAAGGGGCCGACAGTTCTATTGACAGCGTAGACTTTGTTTACTTCATAGGAGAGCCTTCCATGTATTGCATTCGTT
CGTCAGGGAATGTGTACTGGCCCCTATTGGAACTCCCATATGGAGAATTCGCCTTGACTTCTCTTCTATTACGTACAAGTGGGCCAGCCAGTGCTGCTAGTAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCGAGATAATACTAATATTCTCCCCCTTGATCCCAAGATTGAAAGGACGTGTAGAGGAAACCTAAGGGTTCAAGCCCGAATAAACTGCAAGGGTGCGGCGACCAG
GGCCGCCTCTCCATTCTTTGATTGCCTTAGCTTGTCAGTCAAGACCATAGGTCCTGAATTTCTACGCGAATCAAGATCGAGAAAAGGAAGTTTTCTAATCATTGACTCAA
ACCTATTGTCGAACCCCACTCAGCGTAATATGGAGGTACTTATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATT
AGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGA
TGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTCAATAGCTCAAAGAAAGTCTCGTCCCGACCTGGGGTTGGCTTGAGAAGGA
GAGTCTCGCCGGTTGTTAACAAAGCGGCATGCAAGGAAGCAAAGATGAACCGGCTTGGGGGGAATAAAGAATCTGAATTGGAGGGTGGGTCCTTAACACCAAACTACTGC
TCCATAGCAAGCAGCGCGAGAGCTCTGAACTTTCATTCAAACTTACTGGAAAAACTCCTGCTCTTTTCAATATTCCTTCCTTGGGAAACTTTCAAACTGTCCGTCAGCCC
GCTTTTAAACTGGCTTGCTATAACCCGCTTTCCTAAGCTAAGAGCTAGTACAAGAAAGTGGAGGCTCGATGAACGGCCTAAAAAGTCCAGGTATCTCGTTGTAATCCCAA
GCTTGCAATCCCTAAACTCCTTGAGTAGCCCTCTTTCTGAAGAGCAGTTGACCGTGCTACTCATTCATTCTGCCAAGGGTGGTCAGAAGCCGCCGAAGAAGAAGGGTAAT
TCTTCCAAGGCAACAACCAAGAAGACGGACAAGGCCAGTCATGGGCCTGATGAGTCGAATTCCTACTTCAAGGAGGGGTCACAGTATGCGCATTCCCCGTATTCTATGTC
CGCCTATTCCACCGGAACCATATTAGCCAGGGGAGAAGGGGCCGACAGTTCTATTGACAGCGTAGACTTTGTTTACTTCATAGGAGAGCCTTCCATGTATTGCATTCGTT
CGTCAGGGAATGTGTACTGGCCCCTATTGGAACTCCCATATGGAGAATTCGCCTTGACTTCTCTTCTATTACGTACAAGTGGGCCAGCCAGTGCTGCTAGTAGGTAA
Protein sequenceShow/hide protein sequence
MPRDNTNILPLDPKIERTCRGNLRVQARINCKGAATRAASPFFDCLSLSVKTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLI
SRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSFNSSKKVSSRPGVGLRRRVSPVVNKAACKEAKMNRLGGNKESELEGGSLTPNYC
SIASSARALNFHSNLLEKLLLFSIFLPWETFKLSVSPLLNWLAITRFPKLRASTRKWRLDERPKKSRYLVVIPSLQSLNSLSSPLSEEQLTVLLIHSAKGGQKPPKKKGN
SSKATTKKTDKASHGPDESNSYFKEGSQYAHSPYSMSAYSTGTILARGEGADSSIDSVDFVYFIGEPSMYCIRSSGNVYWPLLELPYGEFALTSLLLRTSGPASAASR