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Cla97C10G191660 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C10G191660
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionATP-dependent Clp protease proteolytic subunit
Genome locationCla97Chr10:14065322..14069500
RNA-Seq ExpressionCla97C10G191660
SyntenyCla97C10G191660
Gene Ontology termsGO:0006515 - protein quality control for misfolded or incompletely synthesized proteins (biological process)
GO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0009368 - endopeptidase Clp complex (cellular component)
GO:0009526 - plastid envelope (cellular component)
GO:0009570 - chloroplast stroma (cellular component)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0000987 - proximal promoter sequence-specific DNA binding (molecular function)
GO:0004176 - ATP-dependent peptidase activity (molecular function)
GO:0004252 - serine-type endopeptidase activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
GO:0051117 - ATPase binding (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR033897 - MADS SRF-like
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060718.1 ATP-dependent Clp protease proteolytic subunit 3 [Cucumis melo var. makuwa]5.5e-1786.79Show/hide
Query:  PIAKATLPPKTRVWDLWKVEGSRKAKKNWPSENKILQNGYRGGQGSDEERGSQ
        PIA+AT PPKTRVWDLWKVEGSRKAKKN PSE+KIL+NGY+GG+GSDEERGSQ
Subjt:  PIAKATLPPKTRVWDLWKVEGSRKAKKNWPSENKILQNGYRGGQGSDEERGSQ

XP_008457103.1 PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]5.5e-1786.79Show/hide
Query:  PIAKATLPPKTRVWDLWKVEGSRKAKKNWPSENKILQNGYRGGQGSDEERGSQ
        PIA+AT PPKTRVWDLWKVEGSRKAKKN PSE+KIL+NGY+GG+GSDEERGSQ
Subjt:  PIAKATLPPKTRVWDLWKVEGSRKAKKNWPSENKILQNGYRGGQGSDEERGSQ

XP_022143418.1 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Momordica charantia]1.6e-1684.91Show/hide
Query:  PIAKATLPPKTRVWDLWKVEGSRKAKKNWPSENKILQNGYRGGQGSDEERGSQ
        PIA A  PPKTRVWDLWKVEGSRKAKKN PSE+KILQNGY+GGQG+DEERG+Q
Subjt:  PIAKATLPPKTRVWDLWKVEGSRKAKKNWPSENKILQNGYRGGQGSDEERGSQ

XP_038887053.1 agamous-like MADS-box protein AGL82, partial [Benincasa hispida]4.0e-2087.5Show/hide
Query:  QGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDPSTQSELEF
        +GKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDV+TCVL+HGPAS  TEDPS QS+ EF
Subjt:  QGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDPSTQSELEF

XP_038887059.1 agamous-like MADS-box protein AGL82, partial [Benincasa hispida]6.2e-2189.06Show/hide
Query:  QGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDPSTQSELEF
        +GKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDV+TCVL+HGPAS  TEDPS QS+LEF
Subjt:  QGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDPSTQSELEF

TrEMBL top hitse value%identityAlignment
A0A1S3C615 ATP-dependent Clp protease proteolytic subunit2.6e-1786.79Show/hide
Query:  PIAKATLPPKTRVWDLWKVEGSRKAKKNWPSENKILQNGYRGGQGSDEERGSQ
        PIA+AT PPKTRVWDLWKVEGSRKAKKN PSE+KIL+NGY+GG+GSDEERGSQ
Subjt:  PIAKATLPPKTRVWDLWKVEGSRKAKKNWPSENKILQNGYRGGQGSDEERGSQ

A0A5A7UZN2 ATP-dependent Clp protease proteolytic subunit2.6e-1786.79Show/hide
Query:  PIAKATLPPKTRVWDLWKVEGSRKAKKNWPSENKILQNGYRGGQGSDEERGSQ
        PIA+AT PPKTRVWDLWKVEGSRKAKKN PSE+KIL+NGY+GG+GSDEERGSQ
Subjt:  PIAKATLPPKTRVWDLWKVEGSRKAKKNWPSENKILQNGYRGGQGSDEERGSQ

A0A6J1CQN6 ATP-dependent Clp protease proteolytic subunit7.7e-1784.91Show/hide
Query:  PIAKATLPPKTRVWDLWKVEGSRKAKKNWPSENKILQNGYRGGQGSDEERGSQ
        PIA A  PPKTRVWDLWKVEGSRKAKKN PSE+KILQNGY+GGQG+DEERG+Q
Subjt:  PIAKATLPPKTRVWDLWKVEGSRKAKKNWPSENKILQNGYRGGQGSDEERGSQ

A0A6J1F4C8 agamous-like MADS-box protein AGL141.5e-1578.33Show/hide
Query:  QGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDPSTQS
        +GKLS NLI NRKSR STFK+RKNSLMKKAYELSTLCDVRTCVLI+GP  +  EDPS  S
Subjt:  QGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDPSTQS

A0A6J1J5U6 agamous-like MADS-box protein AGL141.5e-1578.33Show/hide
Query:  QGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDPSTQS
        +GKLS NLI NRKSR STFK+RKNSLMKKAYELSTLCDVRTCVLI+GP  +  EDPS  S
Subjt:  QGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDPSTQS

SwissProt top hitse value%identityAlignment
Q7XJK5 Agamous-like MADS-box protein AGL909.1e-0754.35Show/hide
Query:  KLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGP
        K+ L+LI N +SR ++F KRKN + KK +ELSTLC V+ C LI+ P
Subjt:  KLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGP

Q9C6V4 Agamous-like MADS-box protein AGL927.0e-0744.26Show/hide
Query:  KLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDPSTQSELE
        K  L LIP+R  R +TF+KR   + KK +EL+TLCD++ C +I+ P  + T  PST+   E
Subjt:  KLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDPSTQSELE

Q9FIM0 Agamous-like MADS-box protein AGL822.4e-0753.06Show/hide
Query:  LSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSS
        + L  I N K+RI+T+KKRK SL KKA E STLC V TC++++GP  ++
Subjt:  LSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSS

Q9FJK3 Agamous-like MADS-box protein AGL801.5e-0650Show/hide
Query:  KLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTE
        K+ L  I N  SR +TFKKRK  LMKK +ELSTLC +  C +I+ P  ++ E
Subjt:  KLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTE

Q9SXJ6 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic4.8e-0862.5Show/hide
Query:  PIAKATLPPKTRVWDLWKVEGSRKAKKNWPSENKILQNGY
        PI   T PPKT+VWDLWKVEG++K   N PSE  + QNGY
Subjt:  PIAKATLPPKTRVWDLWKVEGSRKAKKNWPSENKILQNGY

Arabidopsis top hitse value%identityAlignment
AT1G31640.1 AGAMOUS-like 924.9e-0844.26Show/hide
Query:  KLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDPSTQSELE
        K  L LIP+R  R +TF+KR   + KK +EL+TLCD++ C +I+ P  + T  PST+   E
Subjt:  KLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDPSTQSELE

AT1G66670.1 CLP protease proteolytic subunit 33.4e-0962.5Show/hide
Query:  PIAKATLPPKTRVWDLWKVEGSRKAKKNWPSENKILQNGY
        PI   T PPKT+VWDLWKVEG++K   N PSE  + QNGY
Subjt:  PIAKATLPPKTRVWDLWKVEGSRKAKKNWPSENKILQNGY

AT5G26580.1 AGAMOUS-like-341.7e-0858.7Show/hide
Query:  KLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGP
        K+ L+LI N  SR ++F KRKN +MKK YELSTLC V+ C LI+ P
Subjt:  KLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGP

AT5G55690.1 MADS-box transcription factor family protein3.8e-0850.98Show/hide
Query:  LSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTE
        + +  I N K+RI+T+KKRK  L KKA E STLC V TCV+++GP+ +  E
Subjt:  LSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTE

AT5G58890.1 AGAMOUS-like 821.7e-0853.06Show/hide
Query:  LSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSS
        + L  I N K+RI+T+KKRK SL KKA E STLC V TC++++GP  ++
Subjt:  LSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAATTGCAAAAGCAACTCTTCCACCGAAAACCCGAGTCTGGGATCTATGGAAGGTTGAAGGGAGTAGGAAAGCCAAGAAGAATTGGCCTTCAGAAAACAAGATTTT
GCAGAATGGATATCGAGGTGGTCAAGGAAGTGACGAGGAGCGCGGTAGCCAAGGAAAATTGAGTCTGAATCTGATTCCAAATCGGAAATCTCGAATCTCAACCTTCAAGA
AGAGGAAGAACAGTTTGATGAAGAAGGCTTACGAGCTCTCTACCCTTTGCGATGTTCGGACTTGCGTTCTCATCCATGGCCCTGCTTCTTCGTCGACTGAAGATCCTTCT
ACCCAATCGGAGCTGGAATTCACTCTTGGCCTTCCAATCGCACCGACCTCGAAGCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAATTGCAAAAGCAACTCTTCCACCGAAAACCCGAGTCTGGGATCTATGGAAGGTTGAAGGGAGTAGGAAAGCCAAGAAGAATTGGCCTTCAGAAAACAAGATTTT
GCAGAATGGATATCGAGGTGGTCAAGGAAGTGACGAGGAGCGCGGTAGCCAAGGAAAATTGAGTCTGAATCTGATTCCAAATCGGAAATCTCGAATCTCAACCTTCAAGA
AGAGGAAGAACAGTTTGATGAAGAAGGCTTACGAGCTCTCTACCCTTTGCGATGTTCGGACTTGCGTTCTCATCCATGGCCCTGCTTCTTCGTCGACTGAAGATCCTTCT
ACCCAATCGGAGCTGGAATTCACTCTTGGCCTTCCAATCGCACCGACCTCGAAGCTATGA
Protein sequenceShow/hide protein sequence
MPIAKATLPPKTRVWDLWKVEGSRKAKKNWPSENKILQNGYRGGQGSDEERGSQGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDPS
TQSELEFTLGLPIAPTSKL