CuGenDBv2

Gene ID	Cla97C10G192570
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	classical arabinogalactan protein 1-like
Genome location	Cla97Chr10:20204955..20205488
RNA-Seq Expression	Cla97C10G192570
Synteny	Cla97C10G192570
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0031225 - anchored component of membrane (cellular component)
InterPro domains	IPR044959 - Classical arabinogalactan protein

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0061155.1 classical arabinogalactan protein 1-like [Cucumis melo var. makuwa]

9.1e-28

77.42

Show/hide

Query:  MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAP
        MAIRSL AM+LV+ LI SA AQ        SP++SPSKAPS SPSVKSPKSSPA APTPSSLKSPPSPPSTSPSTSPS + SPATSPSSISSPPADAPAP
Subjt:  MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAP

Query:  SGNGAASIPFSAFGSVAVVLYALL
        SGNGAASI FS  GS AV LYA++
Subjt:  SGNGAASIPFSAFGSVAVVLYALL

KAG7030900.1 hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-27

73.85

Show/hide

Query:  MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAP
        MAIR    M++VA+LI SAIAQSP+ASPS SP+KSPSKAPS SPSV+SPKSSPAAAPTP+SLKSPPSPP+ SPS SPSP      SPSSISSPPADAPAP
Subjt:  MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAP

Query:  SGNGAASIPFSAFGSVAVVLYALLSLFFII
        SGN AASI FS FGSVA VLYA+  +  I+
Subjt:  SGNGAASIPFSAFGSVAVVLYALLSLFFII

XP_022942993.1 classical arabinogalactan protein 1-like [Cucurbita moschata]

6.9e-28

76.61

Show/hide

Query:  MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAP
        MAIR    M+ VA+LI SAIAQSP+ASPS SP+KSPSKAPS SPSV+SPKSSPAAAPTP+SLKSPPSPP+ SPS SPSP      SPSSISSPPADAPAP
Subjt:  MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAP

Query:  SGNGAASIPFSAFGSVAVVLYALL
        SGN AASI FS FGSVA VLYA++
Subjt:  SGNGAASIPFSAFGSVAVVLYALL

XP_023542663.1 classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]

4.5e-27

Show/hide

Query:  MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAP
        MAIR    M++VA+LI SAIAQSP+ASPS SP+KSPSKAPS SPSV+SPKSSPAAAPTP+SL+SPPSPP+ SPS SP    SP+ SPSSISSPPADAPAP
Subjt:  MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAP

Query:  SGNGAASIPFSAFGSVAVVLYALL
        SGN AASI  S FGSVA VLYA++
Subjt:  SGNGAASIPFSAFGSVAVVLYALL

XP_038877310.1 classical arabinogalactan protein 1 [Benincasa hispida]

6.9e-36

88.1

Show/hide

Query:  MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAP
        MAIRS  AM+LVALLIGSAIAQSP ASP  SPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSP+TSPSP TSPATSPS ISSPPADAPAP
Subjt:  MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAP

Query:  SGNGAASIPFSAFGSVAVVLYALLSL
        SGNGAASI FS FGSVAVVLY ++ L
Subjt:  SGNGAASIPFSAFGSVAVVLYALLSL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KZB8 Uncharacterized protein

1.1e-26

75.81

Show/hide

Query:  MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAP
        MAI SL A++ V+  I SA AQSPAASPS SP+KSPSKAPS +    SPKSSPA APTPSSLKSPPSPPS+SPSTSPSPA+SPA    SISSPPADAPAP
Subjt:  MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAP

Query:  SGNGAASIPFSAFGSVAVVLYALL
        SGNGAASI FS FGSVAV LYA++
Subjt:  SGNGAASIPFSAFGSVAVVLYALL

A0A5A7V5Q9 Classical arabinogalactan protein 1-like

4.4e-28

77.42

Show/hide

Query:  MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAP
        MAIRSL AM+LV+ LI SA AQ        SP++SPSKAPS SPSVKSPKSSPA APTPSSLKSPPSPPSTSPSTSPS + SPATSPSSISSPPADAPAP
Subjt:  MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAP

Query:  SGNGAASIPFSAFGSVAVVLYALL
        SGNGAASI FS  GS AV LYA++
Subjt:  SGNGAASIPFSAFGSVAVVLYALL

A0A6J1E9Q3 classical arabinogalactan protein 1-like

7.0e-26

77.42

Show/hide

Query:  MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAP
        MAIRS   M+LVALLIGSAIAQSPAASPS SP KSPSKAPSASPSVKSPKSSP AAPTP+S          SPSTSP    SPA SPSSISSPPADAPAP
Subjt:  MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAP

Query:  SGNGAASIPFSAFGSVAVVLYALL
        SG+GAASI FS FGSVAVVLYA++
Subjt:  SGNGAASIPFSAFGSVAVVLYALL

A0A6J1FW49 classical arabinogalactan protein 1-like

3.4e-28

76.61

Show/hide

Query:  MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAP
        MAIR    M+ VA+LI SAIAQSP+ASPS SP+KSPSKAPS SPSV+SPKSSPAAAPTP+SLKSPPSPP+ SPS SPSP      SPSSISSPPADAPAP
Subjt:  MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAP

Query:  SGNGAASIPFSAFGSVAVVLYALL
        SGN AASI FS FGSVA VLYA++
Subjt:  SGNGAASIPFSAFGSVAVVLYALL

A0A6J1JSK4 classical arabinogalactan protein 1-like

3.1e-26

74.19

Show/hide

Query:  MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAP
        MA R    M+ VA+LI SAIAQSP+ASPS SP+KSPSKAPS SPSV+SPKSSPAAAPTP+SLKSPPSPP+ SPS SPSP      SPSSISSPPADAPAP
Subjt:  MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAP

Query:  SGNGAASIPFSAFGSVAVVLYALL
        SGN AASI  S FGSVA VL+A++
Subjt:  SGNGAASIPFSAFGSVAVVLYALL

SwissProt top hits

e value

%identity

Alignment

Q8LCN5 Classical arabinogalactan protein 1

4.0e-10

53.54

Show/hide

Query:  RSLAAMLLVALLIGSAIAQSPAASPS------FSPSKSPSK--APSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPA
        +SL  +LL ALLI SA+AQSPA +PS       SP+ SP K  AP+ +P V SP  SPAAA TP S  SPPSPP     T    A SPA SPS+IS  P 
Subjt:  RSLAAMLLVALLIGSAIAQSPAASPS------FSPSKSPSK--APSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPA

Query:  DAPAPSGNGAASIPFSAFGSVAVVLYA
        +AP P+  GA S  F++FGSVAV+L A
Subjt:  DAPAPSGNGAASIPFSAFGSVAVVLYA

Arabidopsis top hits

e value

%identity

Alignment

AT5G64310.1 arabinogalactan protein 1

2.8e-11

53.54

Show/hide

Query:  RSLAAMLLVALLIGSAIAQSPAASPS------FSPSKSPSK--APSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPA
        +SL  +LL ALLI SA+AQSPA +PS       SP+ SP K  AP+ +P V SP  SPAAA TP S  SPPSPP     T    A SPA SPS+IS  P 
Subjt:  RSLAAMLLVALLIGSAIAQSPAASPS------FSPSKSPSK--APSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPA

Query:  DAPAPSGNGAASIPFSAFGSVAVVLYA
        +AP P+  GA S  F++FGSVAV+L A
Subjt:  DAPAPSGNGAASIPFSAFGSVAVVLYA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGATTAGAAGTCTTGCGGCGATGCTTTTAGTTGCATTGTTGATTGGCTCTGCAATCGCGCAATCGCCGGCGGCATCTCCGTCATTTTCTCCGAGCAAATCACCATC
GAAGGCTCCATCAGCGTCTCCGTCTGTTAAGTCGCCGAAATCCTCTCCGGCAGCCGCACCTACTCCGTCCTCTCTGAAGTCTCCACCATCTCCTCCGTCTACATCGCCGT
CTACTTCTCCATCTCCGGCGACCTCTCCGGCGACCTCTCCTTCCTCGATCTCCTCACCGCCCGCTGATGCTCCTGCTCCGTCAGGTAACGGCGCCGCTTCGATCCCTTTC
TCGGCGTTCGGATCTGTGGCCGTTGTGCTATACGCCTTATTATCATTATTCTTCATTATCTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPF
SAFGSVAVVLYALLSLFFII

Cla97C10G192570 (gene) of Watermelon (97103) v2.5 genome