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Cla97C10G193430 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C10G193430
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description40S ribosomal protein S29
Genome locationCla97Chr10:21876099..21877700
RNA-Seq ExpressionCla97C10G193430
SyntenyCla97C10G193430
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001209 - Ribosomal protein S14
IPR039744 - 40S ribosomal protein S29/30S ribosomal protein S14 type Z
IPR043140 - Ribosomal protein S14/S29


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB80035.1 40S ribosomal protein S29 [Morus notabilis]6.4e-12100Show/hide
Query:  FSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        FSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
Subjt:  FSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

KAF2309651.1 hypothetical protein GH714_004459 [Hevea brasiliensis]7.6e-1377.36Show/hide
Query:  VSYRNNNNNFFLSF---SRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
        +S RN   +F+  F   SRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
Subjt:  VSYRNNNNNFFLSF---SRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS

KAG6747635.1 hypothetical protein POTOM_047525 [Populus tomentosa]6.4e-1291.89Show/hide
Query:  LSFSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        + FSRVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIK
Subjt:  LSFSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

KAG6749024.1 hypothetical protein POTOM_046066 [Populus tomentosa]1.7e-1289.74Show/hide
Query:  LSFSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
        + FSRVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIK+S
Subjt:  LSFSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS

PNY01132.1 40S ribosomal protein s29-like, partial [Trifolium pratense]8.4e-1239.72Show/hide
Query:  ASRSWGTPTSGTLILRTMALVLGLGKQISSHSSAFLMNHESGTLVFFSVCPYPSLLRKLNFNNFFLSVVLFGCFLLLFTLHCVLFGYFIHQLNVSYRNNN
        +++ W T TSGTL  R M LVL L K +  H +  L    +  LV         +++  + NN   +  L G                    +V YR+  
Subjt:  ASRSWGTPTSGTLILRTMALVLGLGKQISSHSSAFLMNHESGTLVFFSVCPYPSLLRKLNFNNFFLSVVLFGCFLLLFTLHCVLFGYFIHQLNVSYRNNN

Query:  NNFFLSFSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
         +      RVCGN HGLIRKYGLMCCRQCF SNAKEIGFIK
Subjt:  NNFFLSFSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

TrEMBL top hitse value%identityAlignment
A0A0A0KV31 Uncharacterized protein4.0e-12100Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
        RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS

A0A2K3NDK7 40S ribosomal protein s29-like (Fragment)4.0e-1239.72Show/hide
Query:  ASRSWGTPTSGTLILRTMALVLGLGKQISSHSSAFLMNHESGTLVFFSVCPYPSLLRKLNFNNFFLSVVLFGCFLLLFTLHCVLFGYFIHQLNVSYRNNN
        +++ W T TSGTL  R M LVL L K +  H +  L    +  LV         +++  + NN   +  L G                    +V YR+  
Subjt:  ASRSWGTPTSGTLILRTMALVLGLGKQISSHSSAFLMNHESGTLVFFSVCPYPSLLRKLNFNNFFLSVVLFGCFLLLFTLHCVLFGYFIHQLNVSYRNNN

Query:  NNFFLSFSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
         +      RVCGN HGLIRKYGLMCCRQCF SNAKEIGFIK
Subjt:  NNFFLSFSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

A0A6A6M7F0 Uncharacterized protein3.7e-1377.36Show/hide
Query:  VSYRNNNNNFFLSF---SRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
        +S RN   +F+  F   SRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
Subjt:  VSYRNNNNNFFLSF---SRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS

A0A7J8VWD8 Uncharacterized protein4.0e-1289.74Show/hide
Query:  LSFSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
        L FSRVCGNPH +IRKYGLMCCRQCFRSNAKEIGFIK S
Subjt:  LSFSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS

W9RIN5 40S ribosomal protein S293.1e-12100Show/hide
Query:  FSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        FSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
Subjt:  FSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

SwissProt top hitse value%identityAlignment
P62273 40S ribosomal protein S293.4e-0878.79Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVC N HGLIRKYGL  CRQCFR  AK+IGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

P62274 40S ribosomal protein S293.4e-0878.79Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVC N HGLIRKYGL  CRQCFR  AK+IGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

P62276 40S ribosomal protein S293.4e-0878.79Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVC N HGLIRKYGL  CRQCFR  AK+IGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q5I7K3 40S ribosomal protein S298.7e-1290.91Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVCGN HGLIRKYGLMCCRQCFRS+AK+IGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q680P8 40S ribosomal protein S296.6e-1293.94Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Arabidopsis top hitse value%identityAlignment
AT3G43980.1 Ribosomal protein S14p/S29e family protein4.7e-1393.94Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

AT3G44010.1 Ribosomal protein S14p/S29e family protein4.7e-1393.94Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

AT4G33865.1 Ribosomal protein S14p/S29e family protein4.7e-1393.94Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCGGACCAGCAAACATCCTCCCCCAACCGGGTCGGCATCTCGATCATGGGGCACTCCAACGTCTGGAACTCTCATCCTAAGAACTATGGCCCTGGTTCTCGGACT
TGGTAAGCAAATATCTTCTCACTCCTCTGCTTTCTTGATGAATCACGAATCTGGAACACTAGTTTTCTTTTCTGTTTGTCCGTATCCTTCACTTTTGAGAAAGCTGAATT
TCAATAATTTCTTTCTTTCAGTTGTACTCTTTGGATGTTTTCTGCTCTTGTTTACTCTCCATTGTGTACTCTTTGGATATTTCATTCATCAATTAAATGTTTCTTATAGA
AATAATAATAATAATTTCTTTCTTTCTTTCAGTCGTGTGTGTGGAAATCCCCATGGGTTGATCAGGAAGTATGGACTTATGTGTTGCAGACAATGCTTTCGTAGCAACGC
CAAGGAAATTGGTTTCATTAAGGCAAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACCGGACCAGCAAACATCCTCCCCCAACCGGGTCGGCATCTCGATCATGGGGCACTCCAACGTCTGGAACTCTCATCCTAAGAACTATGGCCCTGGTTCTCGGACT
TGGTAAGCAAATATCTTCTCACTCCTCTGCTTTCTTGATGAATCACGAATCTGGAACACTAGTTTTCTTTTCTGTTTGTCCGTATCCTTCACTTTTGAGAAAGCTGAATT
TCAATAATTTCTTTCTTTCAGTTGTACTCTTTGGATGTTTTCTGCTCTTGTTTACTCTCCATTGTGTACTCTTTGGATATTTCATTCATCAATTAAATGTTTCTTATAGA
AATAATAATAATAATTTCTTTCTTTCTTTCAGTCGTGTGTGTGGAAATCCCCATGGGTTGATCAGGAAGTATGGACTTATGTGTTGCAGACAATGCTTTCGTAGCAACGC
CAAGGAAATTGGTTTCATTAAGGCAAGTTAA
Protein sequenceShow/hide protein sequence
MDRTSKHPPPTGSASRSWGTPTSGTLILRTMALVLGLGKQISSHSSAFLMNHESGTLVFFSVCPYPSLLRKLNFNNFFLSVVLFGCFLLLFTLHCVLFGYFIHQLNVSYR
NNNNNFFLSFSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS