CuGenDBv2

Gene ID	Cla97C10G194310
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	ATP-dependent Clp protease proteolytic subunit
Genome location	Cla97Chr10:23574626..23575709
RNA-Seq Expression	Cla97C10G194310
Synteny	Cla97C10G194310
Gene Ontology terms	GO:0006515 - protein quality control for misfolded or incompletely synthesized proteins (biological process) GO:0009526 - plastid envelope (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0009840 - chloroplastic endopeptidase Clp complex (cellular component) GO:0004176 - ATP-dependent peptidase activity (molecular function) GO:0004252 - serine-type endopeptidase activity (molecular function) GO:0051117 - ATPase binding (molecular function)
InterPro domains	IPR023562 - Clp protease proteolytic subunit /Translocation-enhancing protein TepA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7036637.1 ATP-dependent Clp protease proteolytic subunit 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

6.6e-52

87.6

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Query:  MAHTFAYTSASSFRLNSLVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYAQG
        MAHTF YTSASSFRLNSLVSVPNSS  SESQK  LPLE  HSRKLGKLVGGGRNLKNSPVKA+YSGE SSLD++SRQG+WSIRDD+QIPSSPYFP YAQG
Subjt:  MAHTFAYTSASSFRLNSLVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYAQG

Query:  QGPPPMVQERFQSVISQLFQY
        QGPPPMVQERFQSVISQLFQ+
Subjt:  QGPPPMVQERFQSVISQLFQY

XP_004152221.1 ATP-dependent Clp protease proteolytic subunit 5, chloroplastic [Cucumis sativus]

2.9e-52

88.43

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Query:  MAHTFAYTSASSFRLNSLVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYAQG
        MAHTFAYTSASSFRLNSLVSVPNSS  S+SQKF LPLEP HSRKLGKLVGGGRNLKN PVKA+YSGE SS+D NSRQGIWSIRDD+Q+PSS YFP YAQG
Subjt:  MAHTFAYTSASSFRLNSLVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYAQG

Query:  QGPPPMVQERFQSVISQLFQY
        QGPPPMVQERFQSVISQLFQY
Subjt:  QGPPPMVQERFQSVISQLFQY

XP_008454281.1 PREDICTED: ATP-dependent Clp protease proteolytic subunit 5, chloroplastic [Cucumis melo]

6.3e-55

90.91

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Query:  MAHTFAYTSASSFRLNSLVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYAQG
        MAHTFAYTSASSFRLNSLVSVPNSS  S+SQKF LPLEP HSRKLGKLVGGGRNLKNSPVKA+YSGE SS+DRNSRQGIWSIRDD+Q+PSSPYFP YAQG
Subjt:  MAHTFAYTSASSFRLNSLVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYAQG

Query:  QGPPPMVQERFQSVISQLFQY
        QGPPPMVQERFQSVISQLFQY
Subjt:  QGPPPMVQERFQSVISQLFQY

XP_022998282.1 ATP-dependent Clp protease proteolytic subunit 5, chloroplastic [Cucurbita maxima]

1.5e-51

86.78

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Query:  MAHTFAYTSASSFRLNSLVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYAQG
        MAHTF YTSASSFRLNSLVSVPNSS  S+SQK  LPLE  HSRKLGKLVGGGRNLKNSPVKA+YSGE SSLD++SRQG+WSIRDD+QIPSSPYFP YAQG
Subjt:  MAHTFAYTSASSFRLNSLVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYAQG

Query:  QGPPPMVQERFQSVISQLFQY
        QGPPPMVQERFQSVISQLFQ+
Subjt:  QGPPPMVQERFQSVISQLFQY

XP_038906134.1 ATP-dependent Clp protease proteolytic subunit 5, chloroplastic [Benincasa hispida]

2.8e-55

93.39

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Query:  MAHTFAYTSASSFRLNSLVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYAQG
        MAHTFAYTSASSFRLNSLVSVPNSS  SES K  LPLEP HSRKLGKLVGGGRNLKNSPVK+VYSGELSSLDRNSRQGIWSIRDD+QIPSSPYFPAYAQG
Subjt:  MAHTFAYTSASSFRLNSLVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYAQG

Query:  QGPPPMVQERFQSVISQLFQY
        QGPPPMVQERFQSVISQLFQY
Subjt:  QGPPPMVQERFQSVISQLFQY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTB0 ATP-dependent Clp protease proteolytic subunit

1.4e-52

88.43

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Query:  MAHTFAYTSASSFRLNSLVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYAQG
        MAHTFAYTSASSFRLNSLVSVPNSS  S+SQKF LPLEP HSRKLGKLVGGGRNLKN PVKA+YSGE SS+D NSRQGIWSIRDD+Q+PSS YFP YAQG
Subjt:  MAHTFAYTSASSFRLNSLVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYAQG

Query:  QGPPPMVQERFQSVISQLFQY
        QGPPPMVQERFQSVISQLFQY
Subjt:  QGPPPMVQERFQSVISQLFQY

A0A1S3BY88 ATP-dependent Clp protease proteolytic subunit

3.1e-55

90.91

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Query:  MAHTFAYTSASSFRLNSLVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYAQG
        MAHTFAYTSASSFRLNSLVSVPNSS  S+SQKF LPLEP HSRKLGKLVGGGRNLKNSPVKA+YSGE SS+DRNSRQGIWSIRDD+Q+PSSPYFP YAQG
Subjt:  MAHTFAYTSASSFRLNSLVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYAQG

Query:  QGPPPMVQERFQSVISQLFQY
        QGPPPMVQERFQSVISQLFQY
Subjt:  QGPPPMVQERFQSVISQLFQY

A0A5A7TNH0 ATP-dependent Clp protease proteolytic subunit

3.1e-55

90.91

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Query:  MAHTFAYTSASSFRLNSLVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYAQG
        MAHTFAYTSASSFRLNSLVSVPNSS  S+SQKF LPLEP HSRKLGKLVGGGRNLKNSPVKA+YSGE SS+DRNSRQGIWSIRDD+Q+PSSPYFP YAQG
Subjt:  MAHTFAYTSASSFRLNSLVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYAQG

Query:  QGPPPMVQERFQSVISQLFQY
        QGPPPMVQERFQSVISQLFQY
Subjt:  QGPPPMVQERFQSVISQLFQY

A0A6J1DRD0 ATP-dependent Clp protease proteolytic subunit

9.3e-52

86.78

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Query:  MAHTFAYTSASSFRLNSLVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYAQG
        MAHTFAYTSASSFRLNSLVSVPNSS  SESQK  LPL+P  SRKLGKLVGGGRNLKN+PVKA+YS E SSLDR+SRQG+WSIRDD+QIPSSPYFP YAQG
Subjt:  MAHTFAYTSASSFRLNSLVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYAQG

Query:  QGPPPMVQERFQSVISQLFQY
        QGPPPMVQERF SVISQLFQY
Subjt:  QGPPPMVQERFQSVISQLFQY

A0A6J1K7I3 ATP-dependent Clp protease proteolytic subunit

7.1e-52

86.78

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Query:  MAHTFAYTSASSFRLNSLVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYAQG
        MAHTF YTSASSFRLNSLVSVPNSS  S+SQK  LPLE  HSRKLGKLVGGGRNLKNSPVKA+YSGE SSLD++SRQG+WSIRDD+QIPSSPYFP YAQG
Subjt:  MAHTFAYTSASSFRLNSLVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYAQG

Query:  QGPPPMVQERFQSVISQLFQY
        QGPPPMVQERFQSVISQLFQ+
Subjt:  QGPPPMVQERFQSVISQLFQY

SwissProt top hits

e value

%identity

Alignment

Q9S834 ATP-dependent Clp protease proteolytic subunit 5, chloroplastic

9.9e-35

65.04

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Query:  MAHTFAYTSASSFRLNS--LVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYA
        MAH    TSASS R  +  + + PN S F +S K  LP EPL SRK  KLV   +N KNS  KAVYSG L + +  S QG+WSIRDDLQ+PSSPYFPAYA
Subjt:  MAHTFAYTSASSFRLNS--LVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYA

Query:  QGQGPPPMVQERFQSVISQLFQY
        QGQGPPPMVQERFQS+ISQLFQY
Subjt:  QGQGPPPMVQERFQSVISQLFQY

Arabidopsis top hits

e value

%identity

Alignment

AT1G02560.1 nuclear encoded CLP protease 5

7.0e-36

65.04

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Query:  MAHTFAYTSASSFRLNS--LVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYA
        MAH    TSASS R  +  + + PN S F +S K  LP EPL SRK  KLV   +N KNS  KAVYSG L + +  S QG+WSIRDDLQ+PSSPYFPAYA
Subjt:  MAHTFAYTSASSFRLNS--LVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYA

Query:  QGQGPPPMVQERFQSVISQLFQY
        QGQGPPPMVQERFQS+ISQLFQY
Subjt:  QGQGPPPMVQERFQSVISQLFQY

Sequences

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CDS sequence

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ATGGCCCATACTTTCGCCTACACATCTGCCTCGTCTTTCCGATTAAACTCCCTCGTTTCTGTTCCGAATTCTAGCTGTTTTTCCGAGTCCCAGAAATTCCTTCTTCCACT
GGAGCCTTTGCACTCGAGGAAACTTGGAAAATTAGTTGGAGGTGGAAGAAACCTCAAGAACTCTCCAGTCAAAGCCGTCTACTCGGGCGAGTTGTCATCACTGGATAGGA
ATTCTCGCCAAGGCATTTGGTCTATAAGGGATGATCTGCAAATTCCATCTTCACCATACTTCCCAGCTTACGCACAAGGGCAAGGTCCACCTCCAATGGTGCAGGAACGC
TTCCAAAGTGTTATAAGCCAGCTTTTTCAATATGTAAGGGTGTAG

mRNA sequence

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Protein sequence

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MAHTFAYTSASSFRLNSLVSVPNSSCFSESQKFLLPLEPLHSRKLGKLVGGGRNLKNSPVKAVYSGELSSLDRNSRQGIWSIRDDLQIPSSPYFPAYAQGQGPPPMVQER
FQSVISQLFQYVRV

Cla97C10G194310 (gene) of Watermelon (97103) v2.5 genome