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Cla97C10G194380 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C10G194380
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionBasic helix-loop-helix protein
Genome locationCla97Chr10:23682074..23682352
RNA-Seq ExpressionCla97C10G194380
SyntenyCla97C10G194380
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038125.1 basic helix-loop-helix protein [Cucumis melo var. makuwa]1.1e-2780.85Show/hide
Query:  MEVCAKETLRNQVSDKQIVKQV-KKKLEMSSRSSR-SEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE
        ME+ AK+T    VSD++I KQV KKK+EM SR SR SEKRICLKRIR+LRKMIPKSESMELNGLF+ETADYIVWLQMKVRMMQALVH+LNGSDE
Subjt:  MEVCAKETLRNQVSDKQIVKQV-KKKLEMSSRSSR-SEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE

KAF3972052.1 hypothetical protein CMV_004404 [Castanea mollissima]1.1e-0861.54Show/hide
Query:  LKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE
        ++R+R L+++IP SESM L+GLF+ETADYI+ LQM+VR MQ +V++L GSDE
Subjt:  LKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE

KGN58133.1 hypothetical protein Csa_017541 [Cucumis sativus]2.9e-2880.85Show/hide
Query:  MEVCAKETLRNQVSDKQIVKQV-KKKLEMSSRSSR-SEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE
        ME+ AK+T    VSD++I KQV KKK+EM SRSSR SEKRICLKRIRRL+KM+PKSESMELNGLF+ETADYIVWLQMKVRMMQALVH+LNGSDE
Subjt:  MEVCAKETLRNQVSDKQIVKQV-KKKLEMSSRSSR-SEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE

XP_002301522.1 transcription factor UPBEAT1 [Populus trichocarpa]4.3e-0839.29Show/hide
Query:  MEVCAKETLRNQVSDKQIVKQVKKKLEMSSRSSRSEK--RICLK------------------RIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMM
        M+    E L N+VS+ Q  ++   + + + R +RS++  RI +K                  R+R L+K+IP SESM L+GLF+ETADYI+ LQM+V++M
Subjt:  MEVCAKETLRNQVSDKQIVKQVKKKLEMSSRSSRSEK--RICLK------------------RIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMM

Query:  QALVHILNGSDE
        Q +V +L GSD+
Subjt:  QALVHILNGSDE

XP_023896430.1 transcription factor UPBEAT1 [Quercus suber]1.1e-0861.54Show/hide
Query:  LKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE
        ++R+R L+++IP SESM L+GLF+ETADYI+ LQM+VR MQ +V++L GSDE
Subjt:  LKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE

TrEMBL top hitse value%identityAlignment
A0A0A0L8J6 Uncharacterized protein1.4e-2880.85Show/hide
Query:  MEVCAKETLRNQVSDKQIVKQV-KKKLEMSSRSSR-SEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE
        ME+ AK+T    VSD++I KQV KKK+EM SRSSR SEKRICLKRIRRL+KM+PKSESMELNGLF+ETADYIVWLQMKVRMMQALVH+LNGSDE
Subjt:  MEVCAKETLRNQVSDKQIVKQV-KKKLEMSSRSSR-SEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE

A0A2N9IQ45 Uncharacterized protein2.7e-0855Show/hide
Query:  SRSEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE
        SR +     +R++ L+K+IP  +SM L+GLFKETADYI+ LQM+VR MQ +V++L GSDE
Subjt:  SRSEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE

A0A5A7T9M0 Basic helix-loop-helix protein5.3e-2880.85Show/hide
Query:  MEVCAKETLRNQVSDKQIVKQV-KKKLEMSSRSSR-SEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE
        ME+ AK+T    VSD++I KQV KKK+EM SR SR SEKRICLKRIR+LRKMIPKSESMELNGLF+ETADYIVWLQMKVRMMQALVH+LNGSDE
Subjt:  MEVCAKETLRNQVSDKQIVKQV-KKKLEMSSRSSR-SEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE

A0A7J0G0Q9 Uncharacterized protein2.7e-0853.45Show/hide
Query:  RSEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSD
        R  K +  K++R LRK++PKSESM L+GLF++TA+YI+ LQM+V++MQ +V +L+GS+
Subjt:  RSEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSD

B9GSV5 Uncharacterized protein2.1e-0839.29Show/hide
Query:  MEVCAKETLRNQVSDKQIVKQVKKKLEMSSRSSRSEK--RICLK------------------RIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMM
        M+    E L N+VS+ Q  ++   + + + R +RS++  RI +K                  R+R L+K+IP SESM L+GLF+ETADYI+ LQM+V++M
Subjt:  MEVCAKETLRNQVSDKQIVKQVKKKLEMSSRSSRSEK--RICLK------------------RIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMM

Query:  QALVHILNGSDE
        Q +V +L GSD+
Subjt:  QALVHILNGSDE

SwissProt top hitse value%identityAlignment
O22901 Transcription factor UPBEAT11.9e-0636.25Show/hide
Query:  LRNQVSDKQIVKQVKKKLEMSSRSSRSEKRICLKRIRRLRKMIPKSESME-LNGLFKETADYIVWLQMKVRMMQALVHIL
        +R Q + + +VK++  +   S  +SR   R   +R++ L++++P +++ E L+GLF++TADYI+ L+MKV++MQ +V +L
Subjt:  LRNQVSDKQIVKQVKKKLEMSSRSSRSEKRICLKRIRRLRKMIPKSESME-LNGLFKETADYIVWLQMKVRMMQALVHIL

Arabidopsis top hitse value%identityAlignment
AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators1.3e-0736.25Show/hide
Query:  LRNQVSDKQIVKQVKKKLEMSSRSSRSEKRICLKRIRRLRKMIPKSESME-LNGLFKETADYIVWLQMKVRMMQALVHIL
        +R Q + + +VK++  +   S  +SR   R   +R++ L++++P +++ E L+GLF++TADYI+ L+MKV++MQ +V +L
Subjt:  LRNQVSDKQIVKQVKKKLEMSSRSSRSEKRICLKRIRRLRKMIPKSESME-LNGLFKETADYIVWLQMKVRMMQALVHIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTTTGCGCAAAAGAAACGCTTCGAAATCAAGTCTCGGATAAGCAAATCGTGAAACAAGTCAAGAAGAAGCTAGAGATGTCGTCGAGGTCGTCGAGATCGGAGAA
GAGGATTTGCTTGAAGAGGATTAGGAGGCTGAGGAAGATGATTCCAAAGAGTGAATCTATGGAGTTGAATGGGCTTTTCAAAGAGACAGCAGATTATATTGTATGGTTGC
AAATGAAGGTGAGGATGATGCAAGCGTTGGTTCATATACTGAATGGCTCTGATGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGTTTGCGCAAAAGAAACGCTTCGAAATCAAGTCTCGGATAAGCAAATCGTGAAACAAGTCAAGAAGAAGCTAGAGATGTCGTCGAGGTCGTCGAGATCGGAGAA
GAGGATTTGCTTGAAGAGGATTAGGAGGCTGAGGAAGATGATTCCAAAGAGTGAATCTATGGAGTTGAATGGGCTTTTCAAAGAGACAGCAGATTATATTGTATGGTTGC
AAATGAAGGTGAGGATGATGCAAGCGTTGGTTCATATACTGAATGGCTCTGATGAGTGA
Protein sequenceShow/hide protein sequence
MEVCAKETLRNQVSDKQIVKQVKKKLEMSSRSSRSEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE