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Cla97C10G194880 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C10G194880
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Descriptionstructure-specific endonuclease subunit slx1
Genome locationCla97Chr10:24377423..24381918
RNA-Seq ExpressionCla97C10G194880
SyntenyCla97C10G194880
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0033557 - Slx1-Slx4 complex (cellular component)
GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151512.1 structure-specific endonuclease subunit SLX1 [Cucumis sativus]9.9e-5564.14Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK
        MRLLSHTFRC KPPISNP LSKSSSSS+KD TL+VKSEPKP  KQWCVYLIISSNSPIKTYVGVTLD DRR       NG+   I  G K          
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK

Query:  DMCRVWKYLVEGATLVGRP---AKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
                    AT  GRP   A  +         CEFE+KWK+VSRKISY KK++D+GK +DDQT+RLLKHR+RALGKVKCLFDCSQFEFDWKLDPF
Subjt:  DMCRVWKYLVEGATLVGRP---AKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

XP_008461838.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo]1.3e-5162.63Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK
        MRLLS TFRCQKPPISNP+L KSSSSS K  TL+VK E +P PKQWCVYLIISSNSPIKTYVGVTLD DRR       NG+   I  G K          
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK

Query:  DMCRVWKYLVEGATLVGRP---AKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
                    AT  GRP   A  +         CEFE+KWK+VSRKISY KK+DD+GKQ+D+QT+RLLKHRQRALGKVKCLFDCS FEFDWKLDPF
Subjt:  DMCRVWKYLVEGATLVGRP---AKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

XP_022934184.1 structure-specific endonuclease subunit slx1 [Cucurbita moschata]4.1e-4054.59Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK
        MRLLS TFR QK PIS+P++SKSSSSS K  TL+VKSEP+  PK+WCVYLIISSN PIKTYVGVTLD DRR       NG+   I  G K          
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK

Query:  DMCRVWKYLVEGATLVGRP---AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDP
                    AT  GRP   A ++         CEFE+KWKE+ RK+ + +K+    +VDD T+RLLK RQRALGKVK LFDC+QFEFDW+LDP
Subjt:  DMCRVWKYLVEGATLVGRP---AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDP

XP_022982643.1 structure-specific endonuclease subunit slx1 isoform X1 [Cucurbita maxima]1.1e-4054.82Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK
        MRLLS TFR QK PIS+P++SKSSSSS K  TL +KSEP+   K+WCVYLIISSN PIKTYVGVTLD DRR       NG+   I  G K          
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK

Query:  DMCRVWKYLVEGATLVGRP---AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
                    AT  GRP   A ++         CEFE+KWKE+ RK+S+ +K+    +VDDQT+RLLK RQRALGKVK LFDC+QFEFDW+LDPF
Subjt:  DMCRVWKYLVEGATLVGRP---AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

XP_038903984.1 structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida]4.6e-5265.15Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK
        MRLLS TFR QKP  SN QLSKSSSSS KD  L+VKSEPK  PKQWCVYLIISSNSPIKTYVGVTLD DRR       NG+   I  G K          
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK

Query:  DMCRVWKYLVEGATLVGRP---AKQVPQDPVPEYPCEFETKWKEVSRKISYKKK-DDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
                    AT  GRP   A  +         CEFE+KWKEVSRKISYKKK DDMGKQVDDQT+RLLKHRQRALGKVKCLFDCSQFEF+WKLDPF
Subjt:  DMCRVWKYLVEGATLVGRP---AKQVPQDPVPEYPCEFETKWKEVSRKISYKKK-DDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

TrEMBL top hitse value%identityAlignment
A0A0A0LCZ9 GIY-YIG domain-containing protein4.8e-5564.14Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK
        MRLLSHTFRC KPPISNP LSKSSSSS+KD TL+VKSEPKP  KQWCVYLIISSNSPIKTYVGVTLD DRR       NG+   I  G K          
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK

Query:  DMCRVWKYLVEGATLVGRP---AKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
                    AT  GRP   A  +         CEFE+KWK+VSRKISY KK++D+GK +DDQT+RLLKHR+RALGKVKCLFDCSQFEFDWKLDPF
Subjt:  DMCRVWKYLVEGATLVGRP---AKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

A0A1S3CFH5 structure-specific endonuclease subunit slx16.5e-5262.63Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK
        MRLLS TFRCQKPPISNP+L KSSSSS K  TL+VK E +P PKQWCVYLIISSNSPIKTYVGVTLD DRR       NG+   I  G K          
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK

Query:  DMCRVWKYLVEGATLVGRP---AKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
                    AT  GRP   A  +         CEFE+KWK+VSRKISY KK+DD+GKQ+D+QT+RLLKHRQRALGKVKCLFDCS FEFDWKLDPF
Subjt:  DMCRVWKYLVEGATLVGRP---AKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

A0A6J1DGL6 structure-specific endonuclease subunit SLX11.3e-3653.23Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKD---LTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQ
        MRLLSHTFRC K PISNP+   SSSSS KD    TL  +S+ KP P  WCVYLIISSNSP KTYVGVTL+  RR       NG+   I  G K       
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKD---LTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQ

Query:  FLKDMCRVWKYLVEGATLVGRP---AKQVPQDPVPEYPCEFETKWKEVSRKISYK-KKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDP
                       AT  GRP   A  +         CEFE+KWKEVSRKI++K KKDD  +Q D+Q +RLLK+RQRAL KVK +FDCS+FEFD +LDP
Subjt:  FLKDMCRVWKYLVEGATLVGRP---AKQVPQDPVPEYPCEFETKWKEVSRKISYK-KKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDP

Query:  F
        F
Subjt:  F

A0A6J1F1V2 structure-specific endonuclease subunit slx12.0e-4054.59Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK
        MRLLS TFR QK PIS+P++SKSSSSS K  TL+VKSEP+  PK+WCVYLIISSN PIKTYVGVTLD DRR       NG+   I  G K          
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK

Query:  DMCRVWKYLVEGATLVGRP---AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDP
                    AT  GRP   A ++         CEFE+KWKE+ RK+ + +K+    +VDD T+RLLK RQRALGKVK LFDC+QFEFDW+LDP
Subjt:  DMCRVWKYLVEGATLVGRP---AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDP

A0A6J1J5C9 structure-specific endonuclease subunit slx1 isoform X15.2e-4154.82Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK
        MRLLS TFR QK PIS+P++SKSSSSS K  TL +KSEP+   K+WCVYLIISSN PIKTYVGVTLD DRR       NG+   I  G K          
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK

Query:  DMCRVWKYLVEGATLVGRP---AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
                    AT  GRP   A ++         CEFE+KWKE+ RK+S+ +K+    +VDDQT+RLLK RQRALGKVK LFDC+QFEFDW+LDPF
Subjt:  DMCRVWKYLVEGATLVGRP---AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G43210.1 Excinuclease ABC, C subunit, N-terminal7.9e-1835.18Show/hide
Query:  RLLSHTFRCQKPPISNPQLS--KSSSSSNKDLTLVVKSEPK-----PNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLE
        RLLS TF   K   SNP+    K+  +S   + +   S P+     P  K W VYLI+S+  PIKTYVG+T D  RR       NG+   I  G K    
Subjt:  RLLSHTFRCQKPPISNPQLS--KSSSSSNKDLTLVVKSEPK-----PNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLE

Query:  EPQFLKDMCRVW--KYLVEGATLVGRPAKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKL
                 R W    ++ G T + + +              FE+KWK  +RK+  +KKD+   Q D     LL+HR+RAL KV+   DCS  E DWK+
Subjt:  EPQFLKDMCRVW--KYLVEGATLVGRPAKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACTGCTCTCTCACACATTTCGTTGCCAAAAACCCCCAATCTCAAATCCACAACTTTCCAAATCTTCTTCTTCCTCAAATAAGGATCTAACACTCGTCGTCAAATC
AGAGCCGAAGCCGAACCCGAAGCAATGGTGTGTGTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTAGGCGTCACCCTCGACTTGGATCGACGTGATCCTG
CTAAGTTAGATGGCAATGGTCAGATGTATTTCATATTTTACGGCACTAAAACTGTCCTAGAAGAGCCACAATTCTTGAAGGATATGTGCCGAGTGTGGAAATACTTGGTT
GAAGGCGCTACTCTAGTCGGTAGACCAGCAAAGCAAGTGCCGCAAGACCCTGTGCCAGAATACCCTTGTGAGTTTGAAACGAAATGGAAAGAAGTTTCAAGGAAAATATC
CTATAAGAAGAAGGATGATATGGGAAAGCAAGTAGATGATCAAACAATAAGGTTGCTCAAGCACAGGCAAAGAGCTCTGGGAAAAGTGAAATGTTTGTTTGATTGCAGTC
AATTTGAGTTTGATTGGAAACTGGATCCTTTCTGA
mRNA sequenceShow/hide mRNA sequence
TATTTAGAAAAAAGAAATTAACTGTCAACCAAACGGCCAGTTTCGAACCCACGCCAAAGAAGAGGAATGAAAGAAAGAATATGAGACTGCTCTCTCACACATTTCGTTGC
CAAAAACCCCCAATCTCAAATCCACAACTTTCCAAATCTTCTTCTTCCTCAAATAAGGATCTAACACTCGTCGTCAAATCAGAGCCGAAGCCGAACCCGAAGCAATGGTG
TGTGTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTAGGCGTCACCCTCGACTTGGATCGACGTGATCCTGCTAAGTTAGATGGCAATGGTCAGATGTATT
TCATATTTTACGGCACTAAAACTGTCCTAGAAGAGCCACAATTCTTGAAGGATATGTGCCGAGTGTGGAAATACTTGGTTGAAGGCGCTACTCTAGTCGGTAGACCAGCA
AAGCAAGTGCCGCAAGACCCTGTGCCAGAATACCCTTGTGAGTTTGAAACGAAATGGAAAGAAGTTTCAAGGAAAATATCCTATAAGAAGAAGGATGATATGGGAAAGCA
AGTAGATGATCAAACAATAAGGTTGCTCAAGCACAGGCAAAGAGCTCTGGGAAAAGTGAAATGTTTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAACTGGATCCTT
TCTGATTCTTTACATGGGTTGGGGTTTTTCTTTTTCTTTTACCATATTTATATATTTATCTTCAATTTTATGAATTAATGATTGTTTATAAGATAAATGTCTAATGTTTA
AAATTGTGTTAAAA
Protein sequenceShow/hide protein sequence
MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLV
EGATLVGRPAKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF