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Cla97C10G200090 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C10G200090
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionArabinogalactan peptide 23
Genome locationCla97Chr10:30149812..30150003
RNA-Seq ExpressionCla97C10G200090
SyntenyCla97C10G200090
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043704.1 Arabinogalactan peptide 23 [Cucumis melo var. makuwa]3.5e-0971.43Show/hide
Query:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL
        MDMKK TCA+LVA A VSA MA+ EGPAPAP  SS    + AAL AVGAFIGASL S FAYYL
Subjt:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL

KAG6596222.1 putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]2.5e-0768.25Show/hide
Query:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL
        M + K TCA+L A ATV+A +AS E PA APGPSS  A  AAA+ AVGAFIGAS+ASLFAYYL
Subjt:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL

KAG7027762.1 hypothetical protein SDJN02_08939, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-0871.43Show/hide
Query:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL
        M MKK TCA+L A ATVSA +AS E PA APGPSS  A  AAA+ AVGAFIGAS+A+LFAYYL
Subjt:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL

KCW90250.1 hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]1.9e-0760.32Show/hide
Query:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL
        MDMKK +CA+LVA A++SA +AS + PAPAPGPSSG   ++AAL   G+ +GAS+ S FAYYL
Subjt:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL

XP_038906349.1 arabinogalactan protein 23 [Benincasa hispida]2.9e-1177.78Show/hide
Query:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL
        MDMKK TCA+LV+ A +SA MASGEGPAPAPG SS  A  AAAL AVGAFIGASLAS FAYYL
Subjt:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL

TrEMBL top hitse value%identityAlignment
A0A059DIY4 Uncharacterized protein (Fragment)9.3e-0860.32Show/hide
Query:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL
        MDMKK +CA+LVA A++SA +AS + PAPAPGPSSG   ++AAL   G+ +GAS+ S FAYYL
Subjt:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL

A0A1R3GYJ0 Arabinogalactan peptide 23-like protein1.3e-0655.56Show/hide
Query:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL
        MDMKK +CA++VA A++SAA+A+G+ PA APGP+S    +A+AL  +G+ +GASL S  AYYL
Subjt:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL

A0A1R3HIL4 Arabinogalactan peptide 23-like protein7.9e-0755.56Show/hide
Query:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL
        MDMKK +CA++VA A++SAA+A+G+ PA APGP++ +A  A+AL  +G+ +GASL S  AYYL
Subjt:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL

A0A5D3DQ83 Arabinogalactan peptide 231.7e-0971.43Show/hide
Query:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL
        MDMKK TCA+LVA A VSA MA+ EGPAPAP  SS    + AAL AVGAFIGASL S FAYYL
Subjt:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL

I1L9W6 Uncharacterized protein1.8e-0659.68Show/hide
Query:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYY
        MDMKK TCA+L+A A++SAA+A+ E PAPAPGPSSG    A+A  AVG+ +GAS+ S FA +
Subjt:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYY

SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 231.5e-0753.97Show/hide
Query:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL
        M+MKK  C +L A A+++A MA+ E  APAPGP+S   +++AAL A+G+ +GASL SLF+YYL
Subjt:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL

Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)4.6e-0752.38Show/hide
Query:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL
        M+MKK  C ++ A A+++A MA+  G APAPGP++  AS   A+ A+G+ +GASL SLFAYYL
Subjt:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL

AT3G57690.1 arabinogalactan protein 231.1e-0853.97Show/hide
Query:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL
        M+MKK  C +L A A+++A MA+ E  APAPGP+S   +++AAL A+G+ +GASL SLF+YYL
Subjt:  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACATGAAGAAGTTTACCTGCGCCATCCTTGTCGCCACCGCCACCGTGAGTGCTGCTATGGCCTCCGGTGAAGGCCCGGCTCCCGCACCCGGCCCATCCTCCGGCGA
AGCCTCATCTGCAGCCGCTTTGCAAGCTGTTGGAGCCTTCATTGGTGCTTCTCTTGCATCCCTCTTTGCTTACTACTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACATGAAGAAGTTTACCTGCGCCATCCTTGTCGCCACCGCCACCGTGAGTGCTGCTATGGCCTCCGGTGAAGGCCCGGCTCCCGCACCCGGCCCATCCTCCGGCGA
AGCCTCATCTGCAGCCGCTTTGCAAGCTGTTGGAGCCTTCATTGGTGCTTCTCTTGCATCCCTCTTTGCTTACTACTTGTAA
Protein sequenceShow/hide protein sequence
MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL