; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cla97C10G200740 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C10G200740
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Descriptionserine/arginine-rich SC35-like splicing factor SCL33
Genome locationCla97Chr10:30797791..30801478
RNA-Seq ExpressionCla97C10G200740
SyntenyCla97C10G200740
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443002.1 PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Cucumis melo]6.8e-9678.82Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRV
        MRGRSYSYSPSPPRSYGRRYRSPSPR RGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG                         
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRV

Query:  SCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSR
                          EPRGFGFVQFVDAADAADAKYELDGQVLLG ELTVVFAEENRKRPEEMRARDSSRGRSYSYS R SPLRYS+SPHYDRKYSR
Subjt:  SCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSR

Query:  SPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSYSR
        SPEYYSPARSRRYSR  SPR RRYRE SYSRSPY+ RGRSYSRSRSRSYSRSYSR
Subjt:  SPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSYSR

XP_011652066.1 serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucumis sativus]9.9e-9578.43Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRV
        MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG                         
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRV

Query:  SCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSR
                          EPRGFGFVQFVDAADAADAKYELDGQVLLG ELTVVFAEENRKRPEEMRARDSSRGRSYSYS+R SPLRYSQSPHYDRKYSR
Subjt:  SCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSR

Query:  SPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSYSR
         PEYYSPARSRRYSR  SPR  RYRE SYSRSP + RGRSYSRSRSRSYSRSYSR
Subjt:  SPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSYSR

XP_011652068.1 serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucumis sativus]9.9e-9578.43Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRV
        MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG                         
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRV

Query:  SCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSR
                          EPRGFGFVQFVDAADAADAKYELDGQVLLG ELTVVFAEENRKRPEEMRARDSSRGRSYSYS+R SPLRYSQSPHYDRKYSR
Subjt:  SCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSR

Query:  SPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSYSR
         PEYYSPARSRRYSR  SPR  RYRE SYSRSP + RGRSYSRSRSRSYSRSYSR
Subjt:  SPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSYSR

XP_022151394.1 serine/arginine-rich SC35-like splicing factor SCL33 [Momordica charantia]1.4e-9377.25Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRV
        MRGRSYSYSPSPPRSYGRR+RSPSPR RGGR RDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG                         
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRV

Query:  SCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSR
                          EPRGFGFVQFVD ADA DAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSY+Y  RRSPLRYS+SPHYDRKYSR
Subjt:  SCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSR

Query:  SPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSYSR
        SPEYYSPA+S RYSRSISPRDRRYRE SY RSPY+SRGRSYSRSRSRSYSRSY R
Subjt:  SPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSYSR

XP_038905592.1 serine/arginine-rich SC35-like splicing factor SCL33 [Benincasa hispida]6.4e-9478.93Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRV
        MRGRSYSYSPSPPRSYGRRYRSPSPRG G RRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG                         
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRV

Query:  SCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSR
                          EPRGFGFVQFVDAADAADAKYELDGQVLLGRE+TVVFAEENRKRPEEMRARDSSRGRSYSYS+R SPLRYSQSPHYDRKYSR
Subjt:  SCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSR

Query:  SPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYS
        SPEYYSPARSR+YSRSISPR RRYRE SYSRSPYNSRGRSYS
Subjt:  SPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYS

TrEMBL top hitse value%identityAlignment
A0A0A0LGW4 RRM domain-containing protein4.8e-9578.43Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRV
        MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG                         
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRV

Query:  SCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSR
                          EPRGFGFVQFVDAADAADAKYELDGQVLLG ELTVVFAEENRKRPEEMRARDSSRGRSYSYS+R SPLRYSQSPHYDRKYSR
Subjt:  SCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSR

Query:  SPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSYSR
         PEYYSPARSRRYSR  SPR  RYRE SYSRSP + RGRSYSRSRSRSYSRSYSR
Subjt:  SPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSYSR

A0A1S3B7U0 serine/arginine-rich SC35-like splicing factor SCL333.3e-9678.82Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRV
        MRGRSYSYSPSPPRSYGRRYRSPSPR RGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG                         
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRV

Query:  SCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSR
                          EPRGFGFVQFVDAADAADAKYELDGQVLLG ELTVVFAEENRKRPEEMRARDSSRGRSYSYS R SPLRYS+SPHYDRKYSR
Subjt:  SCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSR

Query:  SPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSYSR
        SPEYYSPARSRRYSR  SPR RRYRE SYSRSPY+ RGRSYSRSRSRSYSRSYSR
Subjt:  SPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSYSR

A0A6J1DCY5 serine/arginine-rich SC35-like splicing factor SCL336.9e-9477.25Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRV
        MRGRSYSYSPSPPRSYGRR+RSPSPR RGGR RDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSG                         
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRV

Query:  SCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSR
                          EPRGFGFVQFVD ADA DAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSY+Y  RRSPLRYS+SPHYDRKYSR
Subjt:  SCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSR

Query:  SPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSYSR
        SPEYYSPA+S RYSRSISPRDRRYRE SY RSPY+SRGRSYSRSRSRSYSRSY R
Subjt:  SPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSYSR

A0A6J1KYI3 serine/arginine-rich SC35-like splicing factor SCL33 isoform X34.3e-8874.12Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRV
        MRGRSYSYSPSPPRSYGRR RS SPRG GGR RDLPTSLLVRNLRHDCRPEDLRGLFG+FGPLKDIYLPRDYYSG                         
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRV

Query:  SCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSR
                          +PRGFGFVQ++D ADAADAKYELDGQVLLGRELTVVFAEENRKRPE+MRARDSSRGRSYSY  RRSPL+YSQSP + RKYSR
Subjt:  SCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSR

Query:  SPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSYSR
        SPEYYSPARSRRYSRSISPRD+ +RE SYSRSPYNSR R YSRSRSRS SRSYSR
Subjt:  SPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSYSR

A0A6J1L0E4 serine/arginine-rich SC35-like splicing factor SCL33 isoform X24.3e-8874.12Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRV
        MRGRSYSYSPSPPRSYGRR RS SPRG GGR RDLPTSLLVRNLRHDCRPEDLRGLFG+FGPLKDIYLPRDYYSG                         
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRV

Query:  SCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSR
                          +PRGFGFVQ++D ADAADAKYELDGQVLLGRELTVVFAEENRKRPE+MRARDSSRGRSYSY  RRSPL+YSQSP + RKYSR
Subjt:  SCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSR

Query:  SPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSYSR
        SPEYYSPARSRRYSRSISPRD+ +RE SYSRSPYNSR R YSRSRSRS SRSYSR
Subjt:  SPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSYSR

SwissProt top hitse value%identityAlignment
O75494 Serine/arginine-rich splicing factor 106.4e-2034.91Show/hide
Query:  TSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRVSCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAAD
        TSL VRN+  D R EDLR  FGR+GP+ D+Y+P D+Y+                                           + PRGF +VQF D  DA D
Subjt:  TSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRVSCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAAD

Query:  AKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSRSPEY-------YSPARSR-----RYSRSISPRDR-R
        A + LD + + GR++ + FA+ +RK P +M+A++     S S  +     R S+S  Y+R+ SRS  +       YSP  SR     R SRS S  DR +
Subjt:  AKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSRSPEY-------YSPARSR-----RYSRSISPRDR-R

Query:  YREHSYSRSPYNSRGRSYSRSRSRSYSRSYSR
        +R  S+SRS  NSR RS S+ +    ++S SR
Subjt:  YREHSYSRSPYNSRGRSYSRSRSRSYSRSYSR

Q1PDV2 Serine/arginine-rich SC35-like splicing factor SCL282.7e-2640.07Show/hide
Query:  RGRSYSYSPSPPRSYGRRYRSPSPRGRGG----RRRDLPTS----------LLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFL
        R RS SYSP P      R RSP PR R G    R R+ P+S          LL+RNL  D RP DLR  F RFGPLKDIYLPR+YY+G            
Subjt:  RGRSYSYSPSPPRSYGRRYRSPSPRGRGG----RRRDLPTS----------LLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFL

Query:  LKVLKTTNEVIRVSCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGR--SYSYSNRRSP
                                       EPRGFGFV++  A DAA+A   ++ +V+ GRE+ +VFAEENRK P+EMR  + + GR   Y  ++ RSP
Subjt:  LKVLKTTNEVIRVSCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGR--SYSYSNRRSP

Query:  LRYSQS-------PHYDRKYS--RSPEYYSP-ARSRRYSRSISPRDRRYREHSYSRSPYNS------RGRSYSRSRSRSYSR
         R  +S       P  + ++S  R  + YSP  RSR  SRS  PR+ R  +    RSP         R R  SRSRSRS SR
Subjt:  LRYSQS-------PHYDRKYS--RSPEYYSP-ARSRRYSRSISPRDRRYREHSYSRSPYNS------RGRSYSRSRSRSYSR

Q8L3X8 Serine/arginine-rich SC35-like splicing factor SCL304.9e-2841.06Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSP----------RGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKV
        MR  S  Y   P R YG R RSP P           G GGRR     SLLVRN+  DCRPE+LR  F RFGP++D+Y+PRDYYSG               
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSP----------RGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKV

Query:  LKTTNEVIRVSCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQ
                                    +PRGF FV+FVDA DA +A+  ++ +   GRE+TVV A E+RKRPEEMR +  +R R  S S  RS  R S+
Subjt:  LKTTNEVIRVSCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQ

Query:  SPHYDRKYSRSPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSY
        S    R  SRSP   S +RSR  SRS SP  RR         P      +YSR   RSYS  Y
Subjt:  SPHYDRKYSRSPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSY

Q9LHP2 Serine/arginine-rich SC35-like splicing factor SCL30A5.2e-5455.3Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR--GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVI
        MRGR  SY+PSPPR YGRR RSPSPRGR  G R  DLPTSLLVRNLRHDCR EDLR  F +FGP+KDIYLPRDYY+G                       
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR--GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVI

Query:  RVSCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSN-RRSPLRYSQSP---HY
                            +PRGFGF+QF+D ADAA+AK+++DG +LLGRELTVVFAEENRK+P EMR RD   GRS  + + RRSP RYS+SP     
Subjt:  RVSCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSN-RRSPLRYSQSP---HY

Query:  DRKYSRSPEYYSPARSRRYSRSISPRDRRY-REHSYSRSP--YNSRGRSYSRSRSRSYSRSYSR
         R  SRS  Y SP   R  SRS+SP+DRRY +E SYSRSP    SR RS S  R +S+SRS  R
Subjt:  DRKYSRSPEYYSPARSRRYSRSISPRDRRY-REHSYSRSP--YNSRGRSYSRSRSRSYSRSYSR

Q9SEU4 Serine/arginine-rich SC35-like splicing factor SCL333.0e-5455.26Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIR
        MRGR  SY+PSPPR YGRR RSPSPRGR GGR RDLPTSLLVRNLRHDCR EDLR  F +FGP+KDIYLPRDYY+G                        
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIR

Query:  VSCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRY-----SQSPHY
                           +PRGFGFVQF+D ADAADAK+ +DG +LLGRELTVVFAEENRK+P EMRAR+   GR      RR+P RY     S  P  
Subjt:  VSCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRY-----SQSPHY

Query:  DRKYSRSPEYYSPARSRRYSRSISPRDRRY-REHSYSRSPYN--SRGRSYS--RSRSRSYSRSYSR
         R  SRS +YYSP   R + RSISPR+ RY    SYSRSP +  SRGRS +  R +SRS S S  R
Subjt:  DRKYSRSPEYYSPARSRRYSRSISPRDRRY-REHSYSRSPYN--SRGRSYS--RSRSRSYSRSYSR

Arabidopsis top hitse value%identityAlignment
AT1G55310.1 SC35-like splicing factor 332.1e-5555.26Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIR
        MRGR  SY+PSPPR YGRR RSPSPRGR GGR RDLPTSLLVRNLRHDCR EDLR  F +FGP+KDIYLPRDYY+G                        
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIR

Query:  VSCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRY-----SQSPHY
                           +PRGFGFVQF+D ADAADAK+ +DG +LLGRELTVVFAEENRK+P EMRAR+   GR      RR+P RY     S  P  
Subjt:  VSCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRY-----SQSPHY

Query:  DRKYSRSPEYYSPARSRRYSRSISPRDRRY-REHSYSRSPYN--SRGRSYS--RSRSRSYSRSYSR
         R  SRS +YYSP   R + RSISPR+ RY    SYSRSP +  SRGRS +  R +SRS S S  R
Subjt:  DRKYSRSPEYYSPARSRRYSRSISPRDRRY-REHSYSRSPYN--SRGRSYS--RSRSRSYSRSYSR

AT1G55310.2 SC35-like splicing factor 331.3e-5555.17Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIR
        MRGR  SY+PSPPR YGRR RSPSPRGR GGR RDLPTSLLVRNLRHDCR EDLR  F +FGP+KDIYLPRDYY+G                        
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIR

Query:  VSCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRY-----SQSPHY
                           +PRGFGFVQF+D ADAADAK+ +DG +LLGRELTVVFAEENRK+P EMRAR+   GR      RR+P RY     S  P  
Subjt:  VSCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRY-----SQSPHY

Query:  DRKYSRSPEYYSPARSRRYSRSISPRDRRY-REHSYSRSPYN--SRGRSYSRSRSRSYSRS
         R  SRS +YYSP   R + RSISPR+ RY    SYSRSP +  SRGRS +  R +S S S
Subjt:  DRKYSRSPEYYSPARSRRYSRSISPRDRRY-REHSYSRSPYN--SRGRSYSRSRSRSYSRS

AT1G55310.3 SC35-like splicing factor 333.0e-5755.47Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIR
        MRGR  SY+PSPPR YGRR RSPSPRGR GGR RDLPTSLLVRNLRHDCR EDLR  F +FGP+KDIYLPRDYY+G                   + +  
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIR

Query:  VSCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQS----PHYD
         +C            K  ++PRGFGFVQF+D ADAADAK+ +DG +LLGRELTVVFAEENRK+P EMRAR+   G  +    R  P  YS+S    P   
Subjt:  VSCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQS----PHYD

Query:  RKYSRSPEYYSPARSRRYSRSISPRDRRY-REHSYSRSPYN--SRGRSYS--RSRSRSYSRSYSR
        R  SRS +YYSP   R + RSISPR+ RY    SYSRSP +  SRGRS +  R +SRS S S  R
Subjt:  RKYSRSPEYYSPARSRRYSRSISPRDRRY-REHSYSRSPYN--SRGRSYS--RSRSRSYSRSYSR

AT3G13570.1 SC35-like splicing factor 30A3.7e-5555.3Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR--GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVI
        MRGR  SY+PSPPR YGRR RSPSPRGR  G R  DLPTSLLVRNLRHDCR EDLR  F +FGP+KDIYLPRDYY+G                       
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSPRGR--GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVI

Query:  RVSCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSN-RRSPLRYSQSP---HY
                            +PRGFGF+QF+D ADAA+AK+++DG +LLGRELTVVFAEENRK+P EMR RD   GRS  + + RRSP RYS+SP     
Subjt:  RVSCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSN-RRSPLRYSQSP---HY

Query:  DRKYSRSPEYYSPARSRRYSRSISPRDRRY-REHSYSRSP--YNSRGRSYSRSRSRSYSRSYSR
         R  SRS  Y SP   R  SRS+SP+DRRY +E SYSRSP    SR RS S  R +S+SRS  R
Subjt:  DRKYSRSPEYYSPARSRRYSRSISPRDRRY-REHSYSRSP--YNSRGRSYSRSRSRSYSRSYSR

AT3G55460.1 SC35-like splicing factor 303.5e-2941.06Show/hide
Query:  MRGRSYSYSPSPPRSYGRRYRSPSP----------RGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKV
        MR  S  Y   P R YG R RSP P           G GGRR     SLLVRN+  DCRPE+LR  F RFGP++D+Y+PRDYYSG               
Subjt:  MRGRSYSYSPSPPRSYGRRYRSPSP----------RGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKV

Query:  LKTTNEVIRVSCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQ
                                    +PRGF FV+FVDA DA +A+  ++ +   GRE+TVV A E+RKRPEEMR +  +R R  S S  RS  R S+
Subjt:  LKTTNEVIRVSCGRQEASNLFIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQ

Query:  SPHYDRKYSRSPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSY
        S    R  SRSP   S +RSR  SRS SP  RR         P      +YSR   RSYS  Y
Subjt:  SPHYDRKYSRSPEYYSPARSRRYSRSISPRDRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGTAGGAGTTACAGTTACAGTCCATCACCACCAAGGAGTTATGGCAGGAGATATCGTAGCCCTAGTCCAAGGGGTCGGGGAGGTCGTAGAAGGGATCTGCCAAC
AAGTCTTTTGGTTAGGAACTTAAGGCATGATTGCAGGCCAGAGGACCTACGTGGATTATTTGGGCGGTTTGGTCCTCTTAAGGACATTTACTTGCCACGAGATTATTATT
CTGGTAACATACAATCTGTTTATGGAGTTTGGTTGTTTTTATTGAAAGTGTTGAAGACAACCAATGAAGTAATTAGAGTATCTTGTGGAAGACAAGAAGCAAGTAATTTG
TTTATTGTGTTGAAGACACTCAAAGAACCACGTGGTTTTGGATTTGTTCAGTTCGTAGATGCTGCTGATGCTGCCGATGCCAAGTATGAACTGGATGGCCAAGTTCTCCT
GGGTCGTGAATTAACTGTTGTGTTTGCGGAAGAGAACAGGAAGAGACCTGAAGAGATGAGAGCACGAGACTCATCAAGGGGTCGGTCCTACAGTTACAGCAACAGGCGCT
CCCCGTTGCGATATTCACAATCCCCGCACTATGATCGAAAATATTCTCGCAGTCCGGAGTATTATTCCCCTGCTCGGTCCAGACGATATTCAAGGTCAATCTCGCCGAGG
GACCGGAGGTACAGGGAACACTCCTACTCGAGGTCACCATATAATTCAAGGGGCCGCAGTTACAGCCGAAGCAGGAGTCGTAGCTATAGTCGAAGCTATTCTAGGTGA
mRNA sequenceShow/hide mRNA sequence
CCGCGAAGTACAAAATCAAAGCCGAGGGAAGTTTCTCGAACATAAAATGGGCGTTCGAGGTAGAGAAGGCAAAAGCTGAAGGAACATCGGAGAATTTTGCTCTTCCAGAT
TGAACGAAAAGCCTCCGTTTGCTTTCTCAATTCTCCGATTCTCAGGAAATAGAAAATGAGAGGTAGGAGTTACAGTTACAGTCCATCACCACCAAGGAGTTATGGCAGGA
GATATCGTAGCCCTAGTCCAAGGGGTCGGGGAGGTCGTAGAAGGGATCTGCCAACAAGTCTTTTGGTTAGGAACTTAAGGCATGATTGCAGGCCAGAGGACCTACGTGGA
TTATTTGGGCGGTTTGGTCCTCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGTAACATACAATCTGTTTATGGAGTTTGGTTGTTTTTATTGAAAGTGTTGAA
GACAACCAATGAAGTAATTAGAGTATCTTGTGGAAGACAAGAAGCAAGTAATTTGTTTATTGTGTTGAAGACACTCAAAGAACCACGTGGTTTTGGATTTGTTCAGTTCG
TAGATGCTGCTGATGCTGCCGATGCCAAGTATGAACTGGATGGCCAAGTTCTCCTGGGTCGTGAATTAACTGTTGTGTTTGCGGAAGAGAACAGGAAGAGACCTGAAGAG
ATGAGAGCACGAGACTCATCAAGGGGTCGGTCCTACAGTTACAGCAACAGGCGCTCCCCGTTGCGATATTCACAATCCCCGCACTATGATCGAAAATATTCTCGCAGTCC
GGAGTATTATTCCCCTGCTCGGTCCAGACGATATTCAAGGTCAATCTCGCCGAGGGACCGGAGGTACAGGGAACACTCCTACTCGAGGTCACCATATAATTCAAGGGGCC
GCAGTTACAGCCGAAGCAGGAGTCGTAGCTATAGTCGAAGCTATTCTAGGTGAGTAAAAATACTTGGAAATTTTAAGAAGCCAGCTGATTTTTCTGAAGACCCAGAAACT
ATGATGCTATGATGTTAAGATATGTTCGGTATTTGGATTTGGGAGGCCTTGTATATGATTTAGAAAAATGCTTGGTTTAGAGCCAACTGATTTTATGCTCTAATTGAACA
AATTTATGAACTTCGTGGTTGTTTTCTCCATGTAGAATGAAACTTGGGATTTTTAGACTTCCTCTAAAATACTCGTCAGTTGAATCTTGAGTGCTGTTAAAATTGAGAGT
ATATTCTAGAAATTATATTAGATGTGATTTTGGAAAATGTGGAGAAAGTAAAGATCTGGTATTTTACTGTAAATAATAAATTTGTTTTAGTCTCTTATTTTCA
Protein sequenceShow/hide protein sequence
MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGNIQSVYGVWLFLLKVLKTTNEVIRVSCGRQEASNL
FIVLKTLKEPRGFGFVQFVDAADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYSYSNRRSPLRYSQSPHYDRKYSRSPEYYSPARSRRYSRSISPR
DRRYREHSYSRSPYNSRGRSYSRSRSRSYSRSYSR