CuGenDBv2

Gene ID	Cla97C10G201340
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	mediator of RNA polymerase II transcription subunit 27
Genome location	Cla97Chr10:31437142..31442793
RNA-Seq Expression	Cla97C10G201340
Synteny	Cla97C10G201340
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0016592 - mediator complex (cellular component) GO:0003713 - transcription coactivator activity (molecular function)
InterPro domains	IPR021627 - Mediator complex, subunit Med27

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004136512.1 mediator of RNA polymerase II transcription subunit 27 isoform X1 [Cucumis sativus]

4.5e-223

93.63

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Query:  MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR  QQPSQGQTATVSP+T   HSP S DDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQ++KPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEN SNNEPALKKPCFSHGVTDVKQNEL 
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELN

Query:  DSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
        DSRSL DILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPG+LGATP DKAGVIEL+IPSVFRAVVSLHPVGSVEPDA+A
Subjt:  DSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVP
        FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGN  +AALYPLLLWICSYQNLFSKACSKCGR LSVNKQSDLLLPPAVRPYKQFC SK SS VP
Subjt:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVP

Query:  ITSLKDQKLDPVQAFHIGCFSEEL
        ITSLKDQKLD VQAFHI CFSEE+
Subjt:  ITSLKDQKLDPVQAFHIGCFSEEL

XP_008442914.1 PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Cucumis melo]

1.5e-223

93.4

Show/hide

Query:  MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR  QQPSQGQTATVSPNT   HSP+SADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQ++KPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEN SNNEPALKKPCFSHGVTDVKQNEL 
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELN

Query:  DSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
        DSRSL DILSC+EKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPG+LGATP DKAGVIEL+IPSVFRAVVSLHP+GSVEPDA+A
Subjt:  DSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVP
        FFSPDERGSHVHARGFSNYH+FRHVTEHAATVLQYFLGN  +AALYPLLLWICSYQNLFSKACSKCGR LSVNKQSDLLLPP VRPYKQFC SK SSAVP
Subjt:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVP

Query:  ITSLKDQKLDPVQAFHIGCFSEEL
        ITSLKDQKLD VQAFHI CFSEE+
Subjt:  ITSLKDQKLDPVQAFHIGCFSEEL

XP_022940393.1 mediator of RNA polymerase II transcription subunit 27 [Cucurbita moschata]

1.1e-216

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Query:  MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MRQTQ P+QG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQ+TKPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL++ENGSN EPA KKPCFSHGVTDVKQ ELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELN

Query:  DSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
        DS SL DIL+CMEKEVP+LKIFTYERLDWLKQASALPSQANENSIGALKEH+YHSPRMSP SL AT TDKA VIEL+IPSVFRAVVSLHPVGSVEPDAVA
Subjt:  DSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVP
        FFSPDERGSHVHARGFSN+HLFRHVTEHAATVLQYF+G  A+AAL+PLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPA+RPYKQFCTSKISS VP
Subjt:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVP

Query:  ITSLKDQKLDPVQAFHIGCFSE
        +TSLKDQKLD VQAFHIGCF+E
Subjt:  ITSLKDQKLDPVQAFHIGCFSE

XP_023539656.1 mediator of RNA polymerase II transcription subunit 27 [Cucurbita pepo subsp. pepo]

3.1e-216

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Query:  MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MRQTQ P+QG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQ+TKPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DENGSN EPA KKPCFSHGVTDVKQ ELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELN

Query:  DSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
        DS SL DIL+C+EKEVP+LKIFTYERLDWLKQASAL SQANENSIGALKEH+YHSPRMSP SL AT TDKA VIEL+IPSVFRAVVSLHPVGSVEPDAVA
Subjt:  DSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVP
        FFSPDERGSHVHARGFSN+HLFRHVTEHAATVLQYF+G  A+AAL+PLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPA+RPYKQFCTSKISSAVP
Subjt:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVP

Query:  ITSLKDQKLDPVQAFHIGCFSE
        +TSLKDQKLD VQAFHIGCF+E
Subjt:  ITSLKDQKLDPVQAFHIGCFSE

XP_038904949.1 mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida]

1.3e-230

95.99

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Query:  MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MRQTQQP+QGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQ+TKPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELN

Query:  DSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
        DSRSL +IL+CMEKEVPELKIFTYERLDWLKQASALPSQANENSIG LKEHSYHSPRMSPGSLGATP DKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
Subjt:  DSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVP
        FFSPDERGSHVHARGFSN+HLFRHVTEHAATVLQYFLGN A+AALYPLLLWICSYQNLFSKACSKCG+LLSVNKQSDLLLPPAVRPYKQFC SK SS+VP
Subjt:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVP

Query:  ITSLKDQKLDPVQAFHIGCFSEEL
        ITSLKDQKLD VQAFHI CFS EL
Subjt:  ITSLKDQKLDPVQAFHIGCFSEEL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LGT1 Uncharacterized protein

2.2e-223

93.63

Show/hide

Query:  MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR  QQPSQGQTATVSP+T   HSP S DDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQ++KPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEN SNNEPALKKPCFSHGVTDVKQNEL 
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELN

Query:  DSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
        DSRSL DILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPG+LGATP DKAGVIEL+IPSVFRAVVSLHPVGSVEPDA+A
Subjt:  DSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVP
        FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGN  +AALYPLLLWICSYQNLFSKACSKCGR LSVNKQSDLLLPPAVRPYKQFC SK SS VP
Subjt:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVP

Query:  ITSLKDQKLDPVQAFHIGCFSEEL
        ITSLKDQKLD VQAFHI CFSEE+
Subjt:  ITSLKDQKLDPVQAFHIGCFSEEL

A0A1S3B7L6 mediator of RNA polymerase II transcription subunit 27

7.5e-224

93.4

Show/hide

Query:  MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR  QQPSQGQTATVSPNT   HSP+SADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQ++KPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEN SNNEPALKKPCFSHGVTDVKQNEL 
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELN

Query:  DSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
        DSRSL DILSC+EKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPG+LGATP DKAGVIEL+IPSVFRAVVSLHP+GSVEPDA+A
Subjt:  DSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVP
        FFSPDERGSHVHARGFSNYH+FRHVTEHAATVLQYFLGN  +AALYPLLLWICSYQNLFSKACSKCGR LSVNKQSDLLLPP VRPYKQFC SK SSAVP
Subjt:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVP

Query:  ITSLKDQKLDPVQAFHIGCFSEEL
        ITSLKDQKLD VQAFHI CFSEE+
Subjt:  ITSLKDQKLDPVQAFHIGCFSEEL

A0A6J1DC62 mediator of RNA polymerase II transcription subunit 27

3.8e-212

87.97

Show/hide

Query:  MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MRQTQQP+QGQTATVSPNTA PHS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTA PHQ+TKPLHLFQKED SMRQHL DLRAVGKQ
Subjt:  MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DE+  N EPALKKPCFSHGVT++KQ+ELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELN

Query:  DSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
        + R+L DIL+CMEKEVP+LKIFTYERLDWLKQA AL SQAN+NSIGALKEH+YHSPRM PGSL A+  DK  VIEL+IPSVFRAVVSLHPVGSVEPDAVA
Subjt:  DSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVP
        FF+PDERGS+VHARGFS +HLFRHVTEHAATVLQYFLG   +AALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPA+RPYKQFCTS++ SAVP
Subjt:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVP

Query:  ITSLKDQKLDPVQAFHIGCFSEEL
        I+SLKDQ+ DPVQAFHIGCFSEEL
Subjt:  ITSLKDQKLDPVQAFHIGCFSEEL

A0A6J1FP59 mediator of RNA polymerase II transcription subunit 27

5.2e-217

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Query:  MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MRQTQ P+QG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQ+TKPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL++ENGSN EPA KKPCFSHGVTDVKQ ELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELN

Query:  DSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
        DS SL DIL+CMEKEVP+LKIFTYERLDWLKQASALPSQANENSIGALKEH+YHSPRMSP SL AT TDKA VIEL+IPSVFRAVVSLHPVGSVEPDAVA
Subjt:  DSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVP
        FFSPDERGSHVHARGFSN+HLFRHVTEHAATVLQYF+G  A+AAL+PLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPA+RPYKQFCTSKISS VP
Subjt:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVP

Query:  ITSLKDQKLDPVQAFHIGCFSE
        +TSLKDQKLD VQAFHIGCF+E
Subjt:  ITSLKDQKLDPVQAFHIGCFSE

A0A6J1KZZ9 mediator of RNA polymerase II transcription subunit 27

1.5e-216

90.76

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Query:  MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MRQTQ P+QG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQ+TKPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL++ENGSN EPA KKPCFSHGVTDVKQ ELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELN

Query:  DSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
        DS SL DIL+CMEKEVP+LKIFTYERLDWLKQAS LPSQANENSIG LKEH+YHSPRMSP SL AT TDKA VIEL+IPSVFRAVVSLHPVGSVEPDAVA
Subjt:  DSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVP
        FFSPDERGSHVHARGFSN+HLFRHVTEHAATVLQYF+G  A+AAL+PLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPA+RPYKQFCTSKISSAVP
Subjt:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVP

Query:  ITSLKDQKLDPVQAFHIGCFSE
        +TSLKDQKLD VQAFHIGCF+E
Subjt:  ITSLKDQKLDPVQAFHIGCFSE

SwissProt top hits

e value

%identity

Alignment

Q8RWM3 Mediator of RNA polymerase II transcription subunit 27

2.0e-125

59.36

Show/hide

Query:  NTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNS
        N A   +  S  DAPPKQVA AM+RL  AAR+IADIRLGADR+LEA+ V +QP  T  PL LF +EDASMRQHL DLR +GK+LEESGVL+ESL SRSNS
Subjt:  NTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNS

Query:  WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELNDSRSLPDILSCMEKEVP
        WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPH++D  G   EP+ KK   SH + +  + E  D ++LPDI S +EK VP
Subjt:  WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELNDSRSLPDILSCMEKEVP

Query:  ELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVAFFSPDERGSHVHARGFS
         +K+ TY RL+WLK+A++LP   +++   A K     S ++  G L     DK  VIEL  PS+FRA+VSL P GSV+PDAVAFFSPDE GS++HARGFS
Subjt:  ELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVAFFSPDERGSHVHARGFS

Query:  NYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVPITSLKDQKLDPVQAFHI
         YH+++H+TEHAAT LQYFLG     ALY LLLWICS++++FSK C+KCGRLL+++K+S L+LPP  R Y++         +P+       LD  +A+H 
Subjt:  NYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVPITSLKDQKLDPVQAFHI

Query:  GCFSEE
         C  ++
Subjt:  GCFSEE

Arabidopsis top hits

e value

%identity

Alignment

AT3G09180.1 CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

1.4e-126

59.36

Show/hide

Query:  NTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNS
        N A   +  S  DAPPKQVA AM+RL  AAR+IADIRLGADR+LEA+ V +QP  T  PL LF +EDASMRQHL DLR +GK+LEESGVL+ESL SRSNS
Subjt:  NTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNS

Query:  WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELNDSRSLPDILSCMEKEVP
        WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPH++D  G   EP+ KK   SH + +  + E  D ++LPDI S +EK VP
Subjt:  WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELNDSRSLPDILSCMEKEVP

Query:  ELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVAFFSPDERGSHVHARGFS
         +K+ TY RL+WLK+A++LP   +++   A K     S ++  G L     DK  VIEL  PS+FRA+VSL P GSV+PDAVAFFSPDE GS++HARGFS
Subjt:  ELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVAFFSPDERGSHVHARGFS

Query:  NYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVPITSLKDQKLDPVQAFHI
         YH+++H+TEHAAT LQYFLG     ALY LLLWICS++++FSK C+KCGRLL+++K+S L+LPP  R Y++         +P+       LD  +A+H 
Subjt:  NYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVPITSLKDQKLDPVQAFHI

Query:  GCFSEE
         C  ++
Subjt:  GCFSEE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCGACAAACTCAGCAGCCATCGCAGGGCCAGACTGCGACGGTGAGCCCTAATACTGCTCCCCCTCACTCTCCCGCCTCTGCGGACGACGCTCCTCCCAAGCAGGTCGC
ACTCGCCATGGACAGACTTGGCCACGCCGCTCGTCTCATCGCCGACATCAGGCTTGGCGCTGATCGCCTTCTCGAAGCCCTCTGCGTCACTGCCCAGCCTCATCAAACCA
CTAAGCCCCTCCACTTGTTTCAGAAAGAAGACGCTTCCATGCGCCAACACCTCCTTGACCTTCGTGCAGTTGGAAAGCAACTTGAAGAGTCTGGTGTTCTCAGTGAATCT
CTTCTTTCGAGAAGTAATTCTTGGGGTCTACATATGCCTTTAGTGTGTCCTGATGGCGCAGTGGTTGCTTATGCTTGGAAACGCCAACTAGCTGGCCAGGCTGGTGCATC
TGCAGTTGACCGAACCAGGTTAGCTTTAAAGGCCTTCACTGACCAGAAAAGACGGTTTTTCCCTCATCTTGAAGATGAAAATGGGTCAAATAACGAGCCTGCGCTGAAGA
AGCCTTGTTTTTCTCATGGAGTGACAGATGTCAAACAAAATGAGCTTAATGATTCTAGATCACTCCCAGATATTCTATCCTGTATGGAAAAGGAAGTGCCGGAGCTTAAG
ATTTTCACTTATGAAAGGTTGGACTGGTTAAAACAAGCTTCAGCCCTTCCCTCTCAAGCAAATGAGAATTCAATAGGAGCATTGAAAGAACATAGCTATCATAGTCCTAG
GATGAGCCCCGGATCACTTGGTGCTACTCCCACAGATAAAGCTGGTGTGATTGAGTTGGTCATTCCTTCGGTCTTTAGAGCCGTAGTATCACTGCATCCAGTTGGTTCTG
TTGAACCAGATGCTGTTGCTTTCTTTTCTCCTGATGAGAGAGGCAGCCATGTACATGCCAGGGGTTTTTCAAATTATCATTTGTTCAGACATGTTACGGAGCATGCTGCC
ACGGTGCTGCAATATTTTCTTGGAAATCTCGCAGAAGCAGCTCTATATCCTCTATTGCTTTGGATCTGCAGCTACCAAAATTTATTTTCAAAAGCTTGTAGTAAATGTGG
ACGGCTGCTATCAGTAAACAAACAATCCGATTTACTGTTACCTCCTGCAGTTCGCCCGTACAAGCAGTTTTGTACATCAAAAATCTCATCAGCTGTGCCCATAACCTCAT
TGAAAGACCAGAAGTTGGATCCTGTTCAAGCTTTCCACATTGGTTGCTTCTCAGAAGAACTGACCGTGTGGACTCTGCTTCACATGTTATACAACAGTATGCTTAGAATC
AGAAGAGGGCATAGGCTGCTTTGCTATCTTGTGCTGCCTTCGGTGATTCGCTAG

mRNA sequence

Show/hide mRNA sequence

GAAAAAACAAAAAACCTATAAAATAAAAGGAAAAGAAATTATATCCTAAATAGTGAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTAAAAGAAATTTAGAGCATAT
GTATATAGATCCATCCTTTTCTATATTCTTATAGTGGAATCGGAGTAAAGAAATTCGAACACAAATTTCGTGATTATTAATATATTAATAAATATAGTTAAATCGAAATA
AAAAAACTTCAATACACATCTCGCAATTATTAATATATTAATAAATTAATTCAGTTAGGTTTGGTTTAGTTATTTTACTATAAAAACTATAAACGTTATAATATTTATGC
TATATGAGTTGGTGTAAAAACAATAAATAGAAGGCGATTATTATTATTATTATTTTTGTTGAAATTAATAATAATAATTGAAGAAAAGAAAAGGCAGGGTGGAAATTCAG
AAATTAGCAGTCGTCTTGCTCACACCTCCGAAGGCTTTTGGGGAAAGAAATTGGAAGCAGTGAACGTCGGCGGAGGGTAAATGCGACAAACTCAGCAGCCATCGCAGGGC
CAGACTGCGACGGTGAGCCCTAATACTGCTCCCCCTCACTCTCCCGCCTCTGCGGACGACGCTCCTCCCAAGCAGGTCGCACTCGCCATGGACAGACTTGGCCACGCCGC
TCGTCTCATCGCCGACATCAGGCTTGGCGCTGATCGCCTTCTCGAAGCCCTCTGCGTCACTGCCCAGCCTCATCAAACCACTAAGCCCCTCCACTTGTTTCAGAAAGAAG
ACGCTTCCATGCGCCAACACCTCCTTGACCTTCGTGCAGTTGGAAAGCAACTTGAAGAGTCTGGTGTTCTCAGTGAATCTCTTCTTTCGAGAAGTAATTCTTGGGGTCTA
CATATGCCTTTAGTGTGTCCTGATGGCGCAGTGGTTGCTTATGCTTGGAAACGCCAACTAGCTGGCCAGGCTGGTGCATCTGCAGTTGACCGAACCAGGTTAGCTTTAAA
GGCCTTCACTGACCAGAAAAGACGGTTTTTCCCTCATCTTGAAGATGAAAATGGGTCAAATAACGAGCCTGCGCTGAAGAAGCCTTGTTTTTCTCATGGAGTGACAGATG
TCAAACAAAATGAGCTTAATGATTCTAGATCACTCCCAGATATTCTATCCTGTATGGAAAAGGAAGTGCCGGAGCTTAAGATTTTCACTTATGAAAGGTTGGACTGGTTA
AAACAAGCTTCAGCCCTTCCCTCTCAAGCAAATGAGAATTCAATAGGAGCATTGAAAGAACATAGCTATCATAGTCCTAGGATGAGCCCCGGATCACTTGGTGCTACTCC
CACAGATAAAGCTGGTGTGATTGAGTTGGTCATTCCTTCGGTCTTTAGAGCCGTAGTATCACTGCATCCAGTTGGTTCTGTTGAACCAGATGCTGTTGCTTTCTTTTCTC
CTGATGAGAGAGGCAGCCATGTACATGCCAGGGGTTTTTCAAATTATCATTTGTTCAGACATGTTACGGAGCATGCTGCCACGGTGCTGCAATATTTTCTTGGAAATCTC
GCAGAAGCAGCTCTATATCCTCTATTGCTTTGGATCTGCAGCTACCAAAATTTATTTTCAAAAGCTTGTAGTAAATGTGGACGGCTGCTATCAGTAAACAAACAATCCGA
TTTACTGTTACCTCCTGCAGTTCGCCCGTACAAGCAGTTTTGTACATCAAAAATCTCATCAGCTGTGCCCATAACCTCATTGAAAGACCAGAAGTTGGATCCTGTTCAAG
CTTTCCACATTGGTTGCTTCTCAGAAGAACTGACCGTGTGGACTCTGCTTCACATGTTATACAACAGTATGCTTAGAATCAGAAGAGGGCATAGGCTGCTTTGCTATCTT
GTGCTGCCTTCGGTGATTCGCTAGCATGTGTTGCAATTATATGACAAAGGAGTGATTCATATTATTCGTAGGTACCAATCCCAATGCTGAAAGAGCCATCCAGTTTCTGA
TGTGGTTAGTTTCTGTTGGCTCAAGTAGCTTGCCATTGTCAAGGCGAGGGAAAGGTACATTCATTTGCTTTGATTTGAGCAATTGCTAGTTTTTCTCAATCTGCTCAGAA
GATAACTTTTCATTTTTGAATCATTTGTATCTTGCCCCTTCAGATTCAAGTAAGGATGTTAGCCTTTTATTAGTACGAGCGGGTGTATGTACAATACTCGTAAGTTTGGA
TCAACATAAGAAAAGAGCGAAAAGAATTATAGTAGTCAACATTTCAGTGGACTTTCTTTTAACCTACATCGTAGATTTAGTTATGGGAAGCATTTTGTTGTGTTATTAAT
TATTCTTGAATATTGAATAATAGTTTGAT

Protein sequence

Show/hide protein sequence

MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSES
LLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELNDSRSLPDILSCMEKEVPELK
IFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVAFFSPDERGSHVHARGFSNYHLFRHVTEHAA
TVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVPITSLKDQKLDPVQAFHIGCFSEELTVWTLLHMLYNSMLRI
RRGHRLLCYLVLPSVIR

Cla97C10G201340 (gene) of Watermelon (97103) v2.5 genome