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Cla97C10G201540 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C10G201540
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUbiquitin-conjugating enzyme E2 variant 1C
Genome locationCla97Chr10:31614635..31619795
RNA-Seq ExpressionCla97C10G201540
SyntenyCla97C10G201540
Gene Ontology termsGO:0006301 - postreplication repair (biological process)
GO:0070534 - protein K63-linked ubiquitination (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR000608 - Ubiquitin-conjugating enzyme E2
IPR016135 - Ubiquitin-conjugating enzyme/RWD-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043837.1 ubiquitin-conjugating enzyme E2 variant 1C [Cucumis melo var. makuwa]5.0e-6679.5Show/hide
Query:  VDCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFCDKDYPDKPPS
        +DC VEYD DVSPMAELKHLLSVCFPSQF GTSGCWRNLNVEKRALAM                            TVHEGRIYQLKLFCDKDYP+KPPS
Subjt:  VDCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFCDKDYPDKPPS

Query:  VRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG
        VRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG
Subjt:  VRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG

KAA3472019.1 ubiquitin-conjugating enzyme E2 variant 1D [Gossypium australe]6.8e-4771.11Show/hide
Query:  LGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLAN
        LGTS CWR+L+VEK+   M  ++  +++  E +F  A          TVHEGRIYQLKLFCDKDYP+KPPSVRFHSR+NMTCVNH+TG+VESKKFG+LAN
Subjt:  LGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLAN

Query:  WQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        W+REYTMEDILTQLKKEMAA HNRKLVQPPEGTYF
Subjt:  WQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

KAB2631790.1 ubiquitin-conjugating enzyme E2 variant 1D [Pyrus ussuriensis x Pyrus communis]1.5e-4662.35Show/hide
Query:  MTLGSGGSSVVDCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFC
        MTLGSGGSSVV     ++                       TS CWRNLN EK+ L M  ++           +  L   L     TVHEGRIYQLKLFC
Subjt:  MTLGSGGSSVVDCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFC

Query:  DKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPE
        DKDYP+KPPSVRFHSRVNMTCVNHETGVVE KKFGLLANWQREYTMEDILTQLKKEM APHNRKLVQPPE
Subjt:  DKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPE

KAG7028134.1 Ubiquitin-conjugating enzyme E2 variant 1D [Cucurbita argyrosperma subsp. argyrosperma]1.1e-4760.34Show/hide
Query:  MTLGSGGSSVVDCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFC
        MTLGSGGSSVV             A  K LLS+  P  F         L   ++ +     S+ +  G++ +++++    +    +TVHEGRIYQLKLFC
Subjt:  MTLGSGGSSVVDCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFC

Query:  DKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        DKDYP+KPPSVRFHSRVNMTCVNHETGVVE KKFGLLANWQREY+MEDILTQLKKEMAAP NRKLVQPPEGTYF
Subjt:  DKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

RDX79999.1 Ubiquitin-conjugating enzyme E2 variant 1D, partial [Mucuna pruriens]4.4e-4657.71Show/hide
Query:  MTLGSGGSSVVDCRVEYDDDVSPMAELKH-LLSVCFPSQFLGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLF
        MTLGSGGSSVV             +   H LL   +  +          L   ++ +     S+ +  G++ +++++    +    +TVHEGRIYQLKLF
Subjt:  MTLGSGGSSVVDCRVEYDDDVSPMAELKH-LLSVCFPSQFLGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLF

Query:  CDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        CDKDYP+KPPSVRFHSR+N+TCVNHETGVVE KKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
Subjt:  CDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

TrEMBL top hitse value%identityAlignment
A0A2P2L1J3 Ubiquitin-conjugating family protein3.7e-4658.05Show/hide
Query:  MTLGSGGSSVVDCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFC
        MTLGSGGSSVV  R     +   + EL+H                       ++ +     S+ +  G++ +++++    +    +TVHEGRIYQLKLFC
Subjt:  MTLGSGGSSVVDCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFC

Query:  DKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        DKDYP+KPPSVRFHSR+NMTCVNHETG+VE KKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
Subjt:  DKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

A0A371FNV5 Ubiquitin-conjugating enzyme E2 variant 1D (Fragment)2.1e-4657.71Show/hide
Query:  MTLGSGGSSVVDCRVEYDDDVSPMAELKH-LLSVCFPSQFLGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLF
        MTLGSGGSSVV             +   H LL   +  +          L   ++ +     S+ +  G++ +++++    +    +TVHEGRIYQLKLF
Subjt:  MTLGSGGSSVVDCRVEYDDDVSPMAELKH-LLSVCFPSQFLGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLF

Query:  CDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        CDKDYP+KPPSVRFHSR+N+TCVNHETGVVE KKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
Subjt:  CDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

A0A5A7TPU5 Ubiquitin-conjugating enzyme E2 variant 1C2.4e-6679.5Show/hide
Query:  VDCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFCDKDYPDKPPS
        +DC VEYD DVSPMAELKHLLSVCFPSQF GTSGCWRNLNVEKRALAM                            TVHEGRIYQLKLFCDKDYP+KPPS
Subjt:  VDCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFCDKDYPDKPPS

Query:  VRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG
        VRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG
Subjt:  VRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG

A0A5B6VRJ3 Ubiquitin-conjugating enzyme E2 variant 1D3.3e-4771.11Show/hide
Query:  LGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLAN
        LGTS CWR+L+VEK+   M  ++  +++  E +F  A          TVHEGRIYQLKLFCDKDYP+KPPSVRFHSR+NMTCVNH+TG+VESKKFG+LAN
Subjt:  LGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLAN

Query:  WQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        W+REYTMEDILTQLKKEMAA HNRKLVQPPEGTYF
Subjt:  WQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

A0A5N5I2A9 Ubiquitin-conjugating enzyme E2 variant 1D7.4e-4762.35Show/hide
Query:  MTLGSGGSSVVDCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFC
        MTLGSGGSSVV     ++                       TS CWRNLN EK+ L M  ++           +  L   L     TVHEGRIYQLKLFC
Subjt:  MTLGSGGSSVVDCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFC

Query:  DKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPE
        DKDYP+KPPSVRFHSRVNMTCVNHETGVVE KKFGLLANWQREYTMEDILTQLKKEM APHNRKLVQPPE
Subjt:  DKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPE

SwissProt top hitse value%identityAlignment
Q54D06 Probable ubiquitin-conjugating enzyme E2 variant2.5e-2349.44Show/hide
Query:  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        +T  + R Y LKL+CDKDYP+KPP+VRF +++N+ CVN + GVV+ K   +L+NW  +  +++IL++L++EM++  N+KLVQPPEG  F
Subjt:  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

Q93YP0 Ubiquitin-conjugating enzyme E2 variant 1A7.1e-3167.44Show/hide
Query:  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG
        +T +EG+I+QLKLFC K+YP+ PP+VRF +R+NM CVN ETGVVE   F +L NW+REYTMEDIL +LKKEM   HNRKL QPPEG
Subjt:  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG

Q9CAB6 Ubiquitin-conjugating enzyme E2 variant 1B1.1e-2863.95Show/hide
Query:  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG
        +T +EG+I+QLKLFC KDYP+ PP+VRF SR+NM CVN E GVV+   F +L+NW+RE+TMED+L QLKKEM +  NRKL QP EG
Subjt:  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG

Q9SJ44 Ubiquitin-conjugating enzyme E2 variant 1C1.1e-4488.76Show/hide
Query:  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        +TVHEGRIYQLKLFCDKDYP+KPP+VRFHSR+NMTCVNH+TGVV+SKKFG+LANWQR+YTMEDILTQLKKEMAA HNRKLVQPPEGT+F
Subjt:  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

Q9SVD7 Ubiquitin-conjugating enzyme E2 variant 1D1.1e-4287.64Show/hide
Query:  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        +TVHEGRIYQLKLFCDKDYP+KPP+VRFHSRVNM CVNHETGVV+ KKFGLLANWQREYTMEDIL QLKKEM+  HNRKLVQPPEGT F
Subjt:  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

Arabidopsis top hitse value%identityAlignment
AT2G36060.1 MMS ZWEI homologue 38.1e-4688.76Show/hide
Query:  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        +TVHEGRIYQLKLFCDKDYP+KPP+VRFHSR+NMTCVNH+TGVV+SKKFG+LANWQR+YTMEDILTQLKKEMAA HNRKLVQPPEGT+F
Subjt:  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

AT2G36060.2 MMS ZWEI homologue 31.1e-4589.77Show/hide
Query:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        TVHEGRIYQLKLFCDKDYP+KPP+VRFHSR+NMTCVNH+TGVV+SKKFG+LANWQR+YTMEDILTQLKKEMAA HNRKLVQPPEGT+F
Subjt:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

AT2G36060.3 MMS ZWEI homologue 35.8e-4487.64Show/hide
Query:  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        +TVHEGRIYQLKLFCDKDYP+KPP+VRFHSR+NMTCVNH+TG V+SKKFG+LANWQR+YTMEDILTQLKKEMAA HNRKLVQPPEGT+F
Subjt:  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

AT3G52560.1 ubiquitin E2 variant 1D-47.5e-4487.64Show/hide
Query:  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        +TVHEGRIYQLKLFCDKDYP+KPP+VRFHSRVNM CVNHETGVV+ KKFGLLANWQREYTMEDIL QLKKEM+  HNRKLVQPPEGT F
Subjt:  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

AT3G52560.4 ubiquitin E2 variant 1D-42.0e-4477.67Show/hide
Query:  LFLKALYEQLEVADSTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG
        L L  +  ++     TVHEGRIYQLKLFCDKDYP+KPP+VRFHSRVNM CVNHETGVV+ KKFGLLANWQREYTMEDIL QLKKEM+  HNRKLVQPPEG
Subjt:  LFLKALYEQLEVADSTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG

Query:  TYF
        T F
Subjt:  TYF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGCTCGGTTCAGGAGGCTCGAGTGTTGTTGATTGTAGAGTTGAATATGACGATGATGTCTCGCCAATGGCAGAACTTAAGCATCTTCTAAGTGTTTGCTTTCCATC
ACAGTTCCTAGGAACTTCAGGTTGCTGGAGGAACTTGAACGTGGAGAAAAGGGCATTGGCGATGCATAACACGTCTTTCTTCTTGAAGTTTGGAGAAGAGCACTTATTTT
TAAAAGCTTTGTATGAACAACTTGAGGTGGCAGACTCTACGGTACATGAAGGTAGAATTTATCAGTTGAAGCTGTTCTGTGATAAAGATTACCCTGATAAGCCACCAAGT
GTTCGTTTTCATTCAAGAGTCAACATGACATGCGTGAACCATGAAACTGGAGTGGTTGAGTCAAAGAAATTTGGACTTCTTGCTAATTGGCAGCGAGAGTACACCATGGA
GGATATACTCACACAGCTGAAAAAGGAAATGGCAGCCCCACATAACCGAAAGCTGGTCCAACCTCCAGAAGGCACCTACTTCTAG
mRNA sequenceShow/hide mRNA sequence
CGAAATAATAATTACTTTTCGTTGCCCCTTTTTCTAACCTATCGATTCCACAAGCCTTCAAGTTTTCCTCTTTATTCCCTTGGTTCTGTCCTTTATCTTCTTAGATTCTT
CATCTTCAAGTGTTCCATTCCCTTCACTCTTCGATCAGATCCTTGTTAGCTGATCGCAATTAACCATTTTTGATTCATCTATGACGCTCGGTTCAGGAGGCTCGAGTGTT
GTTGATTGTAGAGTTGAATATGACGATGATGTCTCGCCAATGGCAGAACTTAAGCATCTTCTAAGTGTTTGCTTTCCATCACAGTTCCTAGGAACTTCAGGTTGCTGGAG
GAACTTGAACGTGGAGAAAAGGGCATTGGCGATGCATAACACGTCTTTCTTCTTGAAGTTTGGAGAAGAGCACTTATTTTTAAAAGCTTTGTATGAACAACTTGAGGTGG
CAGACTCTACGGTACATGAAGGTAGAATTTATCAGTTGAAGCTGTTCTGTGATAAAGATTACCCTGATAAGCCACCAAGTGTTCGTTTTCATTCAAGAGTCAACATGACA
TGCGTGAACCATGAAACTGGAGTGGTTGAGTCAAAGAAATTTGGACTTCTTGCTAATTGGCAGCGAGAGTACACCATGGAGGATATACTCACACAGCTGAAAAAGGAAAT
GGCAGCCCCACATAACCGAAAGCTGGTCCAACCTCCAGAAGGCACCTACTTCTAGTTCCAAGATCATGTAACACATGATCATATGCTTGTGCAATATGCAAATATAGTTT
GCAATGCTGTGTAATCCTGTGGAAGTTTAGCACATTCCAGGAAAGAACCAAAATCTTCATGATGATTTGCATTGCTTCATCGTTGATCAATAGTCTTTTCCTTGTCAATC
TGTGTTAAGGGATGGTCTTTTAATGATGGGAATGTGTCGAATACAAATTTACCCAATAGTATTATCTAATTTGAGCGTTGGTTGTTTGATGCAA
Protein sequenceShow/hide protein sequence
MTLGSGGSSVVDCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFCDKDYPDKPPS
VRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF