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Cla97C11G214340 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C11G214340
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionDNA-directed RNA polymerase subunit beta''
Genome locationCla97Chr11:7740182..7742092
RNA-Seq ExpressionCla97C11G214340
SyntenyCla97C11G214340
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0006412 - translation (biological process)
GO:0006952 - defense response (biological process)
GO:0015986 - ATP synthesis coupled proton transport (biological process)
GO:0009607 - response to biotic stimulus (biological process)
GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component)
GO:0005739 - mitochondrion (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0015078 - proton transmembrane transporter activity (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0008289 - lipid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR007081 - RNA polymerase Rpb1, domain 5
IPR000454 - ATP synthase, F0 complex, subunit C
IPR002379 - V-ATPase proteolipid subunit C-like domain
IPR020537 - ATP synthase, F0 complex, subunit C, DCCD-binding site
IPR035921 - F/V-ATP synthase subunit C superfamily
IPR038662 - F1F0 ATP synthase subunit C superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB9092652.1 hypothetical protein FH972_026963 [Carpinus fangiana]3.9e-2184.51Show/hide
Query:  PILSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA
        P + +   G+  EDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFA MMA
Subjt:  PILSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA

KAF3452179.1 hypothetical protein FNV43_RR08277 [Rhamnella rubrinervis]4.2e-2391.3Show/hide
Query:  LSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA
        +SLSLLGNHEEDSRTGLSGRGAAVGIGNV SSLIHSVARNPSLAKQSFGYAILGFALTEAIA FA   A
Subjt:  LSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA

KAF4349909.1 hypothetical protein G4B88_002331 [Cannabis sativa]1.3e-3280.85Show/hide
Query:  RLVEVVQHIVGSPRATHTNPTLLSPILSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMM
        R+ ++ +H  GSPR THTNPTLLS I+SLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQ FGYAI GFALTEAIA+  P++
Subjt:  RLVEVVQHIVGSPRATHTNPTLLSPILSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMM

QWQ49909.1 ATPase subunit 9 [Zelkova schneideriana]1.3e-2175.56Show/hide
Query:  LSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA---GQIRKKQVKLTRSIRTTSFL
        +SLLGNHEEDSRTGLSGR   VGIGNVFSSLIHSVARNPSLAKQ FGYAILGFALTEAIA FAPMMA     I + +V+++  I TT FL
Subjt:  LSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA---GQIRKKQVKLTRSIRTTSFL

WP_131796660.1 ATP synthase subunit C family protein [Candidatus Frankia datiscae]3.8e-2491.43Show/hide
Query:  SLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMAGQ
        SLSLLGNHEEDSRTGLSGRGAA GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA FAP  A +
Subjt:  SLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMAGQ

TrEMBL top hitse value%identityAlignment
A0A248REA7 DNA-directed RNA polymerase subunit beta''8.8e-1953.78Show/hide
Query:  PKG-LLNVPV-RNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVGSPRATHTNPTLLSPILSLSLLGNHEEDSRTGLSGRGAAVG
        P+G ++++P+ RNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHI    R   T  ++  P ++     +  E S   L GR  A  
Subjt:  PKG-LLNVPV-RNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVGSPRATHTNPTLLSPILSLSLLGNHEEDSRTGLSGRGAAVG

Query:  IGNVFSSLIHSVARNPSLA
         GNV+  +     RN  ++
Subjt:  IGNVFSSLIHSVARNPSLA

A0A291R6T4 DNA-directed RNA polymerase subunit beta''8.8e-1944.72Show/hide
Query:  PKG-LLNVPV-RNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVGSPRATHTNPTLLSPILSLSLLGNHEEDSRTGLSGRGAAVG
        P+G ++++P+ RNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV   +   T         + S+  N  E+ R           
Subjt:  PKG-LLNVPV-RNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVGSPRATHTNPTLLSPILSLSLLGNHEEDSRTGLSGRGAAVG

Query:  IGNVFSSLIHSVARNPSLAKQSFGYAILG--FALTEAIALFAPMMAGQI-RKKQVKLTRSI
        IG V +  ++S  R  +   Q  G  +      LT+ I + +P++   I R +Q+   RS+
Subjt:  IGNVFSSLIHSVARNPSLAKQSFGYAILG--FALTEAIALFAPMMAGQI-RKKQVKLTRSI

A0A5N6L5T5 ATP-synt_C domain-containing protein1.9e-2184.51Show/hide
Query:  PILSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA
        P + +   G+  EDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFA MMA
Subjt:  PILSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA

A0A7J6DWT2 ATP-synt_C domain-containing protein6.3e-3380.85Show/hide
Query:  RLVEVVQHIVGSPRATHTNPTLLSPILSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMM
        R+ ++ +H  GSPR THTNPTLLS I+SLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQ FGYAI GFALTEAIA+  P++
Subjt:  RLVEVVQHIVGSPRATHTNPTLLSPILSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMM

S4UES3 DNA-directed RNA polymerase subunit beta''1.5e-1852.85Show/hide
Query:  PKG-LLNVPV-RNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVGSPRATHTNPTLLSPILSLSLLGNHEEDSRT----GLSGRG
        P+G ++++P+ RNLREGLSLTEY+ISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV   +   T  +     +S+  +G  ++  RT    GL GR 
Subjt:  PKG-LLNVPV-RNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVGSPRATHTNPTLLSPILSLSLLGNHEEDSRT----GLSGRG

Query:  AAVGIGNVFSSLIHSVARNPSLA
         A    NV+S+      RN  ++
Subjt:  AAVGIGNVFSSLIHSVARNPSLA

SwissProt top hitse value%identityAlignment
Q2MIB0 DNA-directed RNA polymerase subunit beta''3.4e-2054.7Show/hide
Query:  PKG-LLNVPVR-NLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV------GSPRATHTNP---TLLSPILSLSLLGNHEED----
        P+G ++++P++ NLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV      G+ R    +P    +   I S +L+G    D    
Subjt:  PKG-LLNVPVR-NLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV------GSPRATHTNP---TLLSPILSLSLLGNHEED----

Query:  SRTGLSGRGAAVGIGNV
            ++ R  A+GIG V
Subjt:  SRTGLSGRGAAVGIGNV

Q2MIJ7 DNA-directed RNA polymerase subunit beta''3.4e-2054.7Show/hide
Query:  PKG-LLNVPVR-NLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV------GSPRATHTNP---TLLSPILSLSLLGNHEED----
        P+G ++++P++ NLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV      G+ R    +P    +   I S +L+G    D    
Subjt:  PKG-LLNVPVR-NLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV------GSPRATHTNP---TLLSPILSLSLLGNHEED----

Query:  SRTGLSGRGAAVGIGNV
            ++ R  A+GIG V
Subjt:  SRTGLSGRGAAVGIGNV

Q2VEI6 DNA-directed RNA polymerase subunit beta''3.4e-2054.7Show/hide
Query:  PKG-LLNVPVR-NLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV------GSPRATHTNP---TLLSPILSLSLLGNHEED----
        P+G ++++P++ NLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV      G+ R    +P    +   I S +L+G    D    
Subjt:  PKG-LLNVPVR-NLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV------GSPRATHTNP---TLLSPILSLSLLGNHEED----

Query:  SRTGLSGRGAAVGIGNV
            ++ R  A+GIG V
Subjt:  SRTGLSGRGAAVGIGNV

Q85FM9 DNA-directed RNA polymerase subunit beta''7.6e-2054.95Show/hide
Query:  PKG-LLNVPV-RNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVGSPRATHTNPTLLSPILSLSLLGNHEEDSRTGLSGRGAAVG
        P+G ++++P+ RNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHI    R   T         SL+ L ++  + R G  G     G
Subjt:  PKG-LLNVPV-RNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVGSPRATHTNPTLLSPILSLSLLGNHEEDSRTGLSGRGAAVG

Query:  -IGNVFSSLIH
         +G V +  ++
Subjt:  -IGNVFSSLIH

Q8WI26 DNA-directed RNA polymerase subunit beta''7.6e-2086.44Show/hide
Query:  PKG-LLNVPVR-NLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV
        P+G ++++P+R NLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV
Subjt:  PKG-LLNVPVR-NLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV

Arabidopsis top hitse value%identityAlignment
AT2G07671.1 ATP synthase subunit C family protein1.7e-1990.57Show/hide
Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA
        ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA

AT2G07706.1 unknown protein1.1e-0570.27Show/hide
Query:  PDHQLRPLNDRSVIKEVGVQRQPGGL------PRSSH
        PDHQLRP N RSVIKEVGVQRQP  L      PRS H
Subjt:  PDHQLRPLNDRSVIKEVGVQRQPGGL------PRSSH

ATCG00170.1 DNA-directed RNA polymerase family protein1.6e-2084.75Show/hide
Query:  PKG-LLNVPVR-NLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV
        P+G ++++P++ NLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV
Subjt:  PKG-LLNVPVR-NLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV

ATMG00040.1 ATP synthase subunit C family protein1.1e-0582.14Show/hide
Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLA
        ++  GAA+GIGNVFSSLIHSVARNPSLA
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLA

ATMG01080.1 mitochondrial F0-ATPase subunit 91.7e-1990.57Show/hide
Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA
        ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CGATTCCGGCTTCATACAGGCGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGGGATCACGACCCTTTGTCCCGGCCATTGTAG
CACGACTGATCAACCATTGCGTAAAGCCTTGCAACGACCTGAAACATCAAGGAGATTGGTGCAAAGGTCAGTCAAACTTGGGGAGCATGACATTCGTTATGAACCAAAAA
CTGCCTTAGAGGCCCAAGTGCTGGCAGACTTCGCTCTTTTCTCAAGAATGAAAAAAAAAAGATCCTGTTCTTTGAGAAGCAACAGCATTCTCATCTTCCAAACATCTACA
TTTAGAGGTTCCATTTTGCGATCCTTGACAATCGTATGTGTTAATGCTGTAATCATATCAGCAACTATAGATCCAGAAGATTGTATCCCGGTTATCGTCGTGCCTAAAGG
ACTCCTCAATGTGCCCGTACGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACAT
CGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGGTAGCCCGCGCGCGACCCATACCAATCCTACACTCCTTTCTCCTATTCTTTCTTTG
TCACTTCTTGGAAATCACGAAGAGGATTCCCGGACTGGACTGAGCGGGAGGGGAGCTGCTGTCGGTATTGGAAACGTTTTCAGTTCATTAATTCATTCCGTGGCGCGAAA
TCCATCATTGGCTAAACAATCATTTGGTTATGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATTGTTTGCTCCAATGATGGCCGGTCAAATCAGGAAGAAACAAG
TCAAATTGACCCGTTCCATTCGCACCACAAGCTTTTTGCCGGATCAGCATCCAATATTCAAAGTTTCGGCTCTTCCTGTGCCTGAATTACTACAGCGCCTTACCGTCTGG
TCTTCATTGGTATTTGCTTTTTGCTCACCCACTACGTTTTTTTTTTCGTTTTTCCCCCGCCCGGTCGAGCTGTCTGAGGTCGATGGTGCATCCGGTAAGCTCTTTCGAGC
CCGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTGA
mRNA sequenceShow/hide mRNA sequence
CGATTCCGGCTTCATACAGGCGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGGGATCACGACCCTTTGTCCCGGCCATTGTAG
CACGACTGATCAACCATTGCGTAAAGCCTTGCAACGACCTGAAACATCAAGGAGATTGGTGCAAAGGTCAGTCAAACTTGGGGAGCATGACATTCGTTATGAACCAAAAA
CTGCCTTAGAGGCCCAAGTGCTGGCAGACTTCGCTCTTTTCTCAAGAATGAAAAAAAAAAGATCCTGTTCTTTGAGAAGCAACAGCATTCTCATCTTCCAAACATCTACA
TTTAGAGGTTCCATTTTGCGATCCTTGACAATCGTATGTGTTAATGCTGTAATCATATCAGCAACTATAGATCCAGAAGATTGTATCCCGGTTATCGTCGTGCCTAAAGG
ACTCCTCAATGTGCCCGTACGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACAT
CGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGGTAGCCCGCGCGCGACCCATACCAATCCTACACTCCTTTCTCCTATTCTTTCTTTG
TCACTTCTTGGAAATCACGAAGAGGATTCCCGGACTGGACTGAGCGGGAGGGGAGCTGCTGTCGGTATTGGAAACGTTTTCAGTTCATTAATTCATTCCGTGGCGCGAAA
TCCATCATTGGCTAAACAATCATTTGGTTATGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATTGTTTGCTCCAATGATGGCCGGTCAAATCAGGAAGAAACAAG
TCAAATTGACCCGTTCCATTCGCACCACAAGCTTTTTGCCGGATCAGCATCCAATATTCAAAGTTTCGGCTCTTCCTGTGCCTGAATTACTACAGCGCCTTACCGTCTGG
TCTTCATTGGTATTTGCTTTTTGCTCACCCACTACGTTTTTTTTTTCGTTTTTCCCCCGCCCGGTCGAGCTGTCTGAGGTCGATGGTGCATCCGGTAAGCTCTTTCGAGC
CCGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTGA
Protein sequenceShow/hide protein sequence
RFRLHTGELQPTIRTEDGFLELAHPRGITTLCPGHCSTTDQPLRKALQRPETSRRLVQRSVKLGEHDIRYEPKTALEAQVLADFALFSRMKKKRSCSLRSNSILIFQTST
FRGSILRSLTIVCVNAVIISATIDPEDCIPVIVVPKGLLNVPVRNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVGSPRATHTNPTLLSPILSL
SLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMAGQIRKKQVKLTRSIRTTSFLPDQHPIFKVSALPVPELLQRLTVW
SSLVFAFCSPTTFFFSFFPRPVELSEVDGASGKLFRARPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHP