; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cla97C11G214375 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C11G214375
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description50S ribosomal protein L2, chloroplastic
Genome locationCla97Chr11:7765333..7768617
RNA-Seq ExpressionCla97C11G214375
SyntenyCla97C11G214375
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR002171 - Ribosomal protein L2
IPR012340 - Nucleic acid-binding, OB-fold
IPR022666 - Ribosomal Proteins L2, RNA binding domain
IPR024034 - ATPase, F1/V1 complex, beta/alpha subunit, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4284021.1 unnamed protein product [Prunus armeniaca]1.6e-5099.01Show/hide
Query:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
        G+HRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
Subjt:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA

Query:  V
        V
Subjt:  V
QHV38350.1 ribosomal protein L2 [Hansenia forbesii]1.6e-5099.01Show/hide
Query:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
        G+HRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
Subjt:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA

Query:  V
        V
Subjt:  V
RYR40788.1 hypothetical protein Ahy_A09g046526 [Arachis hypogaea]1.6e-5099.01Show/hide
Query:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
        G+HRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
Subjt:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA

Query:  V
        V
Subjt:  V
YP_009387707.1 ribosomal protein L2 [Hansenia forbesii]1.6e-5099.01Show/hide
Query:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
        G+HRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
Subjt:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA

Query:  V
        V
Subjt:  V
YP_009906953.1 ribosomal protein L2 [Pennantia cunninghamii]1.6e-5099.01Show/hide
Query:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
        G+HRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
Subjt:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA

Query:  V
        V
Subjt:  V
TrEMBL top hitse value%identityAlignment
A0A6J5VN55 Ribosomal_L2 domain-containing protein7.6e-5199.01Show/hide
Query:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
        G+HRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
Subjt:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA

Query:  V
        V
Subjt:  V
A0A7D5UE67 Ribosomal protein L27.6e-5199.01Show/hide
Query:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
        G+HRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
Subjt:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA

Query:  V
        V
Subjt:  V
A0A7D5YMX9 Ribosomal protein L27.6e-5199.01Show/hide
Query:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
        G+HRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
Subjt:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA

Query:  V
        V
Subjt:  V
A0A7S8HPY4 Ribosomal protein L27.6e-5199.01Show/hide
Query:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
        G+HRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
Subjt:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA

Query:  V
        V
Subjt:  V
A0A7T7D7D8 Ribosomal protein L27.6e-5199.01Show/hide
Query:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
        G+HRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
Subjt:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA

Query:  V
        V
Subjt:  V
SwissProt top hitse value%identityAlignment
A0A398 50S ribosomal protein L2-B, chloroplastic3.9e-5297Show/hide
Query:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
        G+HRCGKGRNARGIITAGHRGGGHKRLYRKIDFRR EKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGA+IGDTIVSGTEVPIKMGNALPLSA
Subjt:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
Q09MB2 50S ribosomal protein L2, chloroplastic3.0e-5297.98Show/hide
Query:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        G+HRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Subjt:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
Q0G9P9 50S ribosomal protein L2, chloroplastic3.0e-5297.98Show/hide
Query:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        G+HRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Subjt:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
Q0ZIX7 50S ribosomal protein L2, chloroplastic3.0e-5297.98Show/hide
Query:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        G+HRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Subjt:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
Q4VZK5 50S ribosomal protein L2, chloroplastic3.0e-5297.98Show/hide
Query:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        G+HRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Subjt:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
Arabidopsis top hitse value%identityAlignment
ATCG00480.1 ATP synthase subunit beta4.2e-2595.08Show/hide
Query:  MLQPRIVGEEHYETAQRVKQTLQRYKELRDIIAILGLDELSEEDRLTVARARKIEPFLSQP
        MLQPRIVGEEHYETAQ+VKQTLQRYKEL+DIIAILGLDELSEEDRLTVARARKIE FLSQP
Subjt:  MLQPRIVGEEHYETAQRVKQTLQRYKELRDIIAILGLDELSEEDRLTVARARKIEPFLSQP
ATCG00830.1 ribosomal protein L23.4e-5194.95Show/hide
Query:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        G+H CGKGRNARGIITA HRGGGHKRLYRKIDFRRN KDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Subjt:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core1.2e-3264Show/hide
Query:  ETAQRVKQTLQRYKELR----DIIAILGLDELSEEDRLTVARARKIEPFLSQPSKEIYSLIRKRKNVNGDWIDDKIESWVSNSDLIDDKEREFLVQFSTL
        + A  VK    + K+L+    DII ++ +   +  +R+T +R  +    LS  SKEIYSLIRKRKNV+GDWIDDKIESWV+NSD IDDKEREFLVQFSTL
Subjt:  ETAQRVKQTLQRYKELR----DIIAILGLDELSEEDRLTVARARKIEPFLSQPSKEIYSLIRKRKNVNGDWIDDKIESWVSNSDLIDDKEREFLVQFSTL

Query:  TTEKRIDQILLSLTHSDHLSKNDSG
          EKRIDQILLSLTHSDHLSKNDSG
Subjt:  TTEKRIDQILLSLTHSDHLSKNDSG
ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core1.2e-3264Show/hide
Query:  ETAQRVKQTLQRYKELR----DIIAILGLDELSEEDRLTVARARKIEPFLSQPSKEIYSLIRKRKNVNGDWIDDKIESWVSNSDLIDDKEREFLVQFSTL
        + A  VK    + K+L+    DII ++ +   +  +R+T +R  +    LS  SKEIYSLIRKRKNV+GDWIDDKIESWV+NSD IDDKEREFLVQFSTL
Subjt:  ETAQRVKQTLQRYKELR----DIIAILGLDELSEEDRLTVARARKIEPFLSQPSKEIYSLIRKRKNVNGDWIDDKIESWVSNSDLIDDKEREFLVQFSTL

Query:  TTEKRIDQILLSLTHSDHLSKNDSG
          EKRIDQILLSLTHSDHLSKNDSG
Subjt:  TTEKRIDQILLSLTHSDHLSKNDSG
ATCG01310.1 ribosomal protein L23.4e-5194.95Show/hide
Query:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        G+H CGKGRNARGIITA HRGGGHKRLYRKIDFRRN KDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Subjt:  GKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTACAACCTCGGATCGTTGGTGAAGAACATTATGAAACTGCGCAAAGAGTGAAACAAACCTTACAACGTTACAAAGAACTGCGGGACATTATAGCTATCCTTGGGTT
AGACGAATTATCCGAAGAGGATCGCTTAACCGTAGCACGAGCACGAAAAATTGAGCCTTTCTTATCACAACCAAGTAAAGAGATATATTCATTGATAAGAAAAAGAAAAA
ATGTGAACGGTGATTGGATTGATGATAAAATCGAATCCTGGGTCTCGAACAGTGATTTGATTGATGATAAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACA
GAAAAAAGGATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTGGAAGCTCTACAGGCCTCGCGCTCCAAACTGATGGCGTCTCGAC
GTTCTCCTTGACGCCGTCCGTCCTGGCGCTCTCCCCCTTTCCTTTAATAAGTTTTGTGACTGTTGGGCCTCCCAGTTATATGATCAACGGGATCAGTCGTCCCTCGAGCG
GGGCTCTTTTTCTTCCGGGAAGGCAAAGTCGTCAGACAATGTTGAAGGCAAGTAAAGCACTAAGACAAAGCAGCAATAAGACAAGTTTAAGACAACCGGCGGAAAGGGCA
ACACGAGCTGACGACAGCCATGCACCACCTGTGTCCGCGTTCCCGAAGGCACCCCTCTCTTTCAAGAGGATTCGCGGCATGTCAAGCCCTGGTAAGCATCGTTGTGGTAA
AGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAA
TCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGAT
ACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTACAACCTCGGATCGTTGGTGAAGAACATTATGAAACTGCGCAAAGAGTGAAACAAACCTTACAACGTTACAAAGAACTGCGGGACATTATAGCTATCCTTGGGTT
AGACGAATTATCCGAAGAGGATCGCTTAACCGTAGCACGAGCACGAAAAATTGAGCCTTTCTTATCACAACCAAGTAAAGAGATATATTCATTGATAAGAAAAAGAAAAA
ATGTGAACGGTGATTGGATTGATGATAAAATCGAATCCTGGGTCTCGAACAGTGATTTGATTGATGATAAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACA
GAAAAAAGGATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTGGAAGCTCTACAGGCCTCGCGCTCCAAACTGATGGCGTCTCGAC
GTTCTCCTTGACGCCGTCCGTCCTGGCGCTCTCCCCCTTTCCTTTAATAAGTTTTGTGACTGTTGGGCCTCCCAGTTATATGATCAACGGGATCAGTCGTCCCTCGAGCG
GGGCTCTTTTTCTTCCGGGAAGGCAAAGTCGTCAGACAATGTTGAAGGCAAGTAAAGCACTAAGACAAAGCAGCAATAAGACAAGTTTAAGACAACCGGCGGAAAGGGCA
ACACGAGCTGACGACAGCCATGCACCACCTGTGTCCGCGTTCCCGAAGGCACCCCTCTCTTTCAAGAGGATTCGCGGCATGTCAAGCCCTGGTAAGCATCGTTGTGGTAA
AGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAA
TCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGAT
ACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGA
Protein sequenceShow/hide protein sequence
MLQPRIVGEEHYETAQRVKQTLQRYKELRDIIAILGLDELSEEDRLTVARARKIEPFLSQPSKEIYSLIRKRKNVNGDWIDDKIESWVSNSDLIDDKEREFLVQFSTLTT
EKRIDQILLSLTHSDHLSKNDSGSSTGLALQTDGVSTFSLTPSVLALSPFPLISFVTVGPPSYMINGISRPSSGALFLPGRQSRQTMLKASKALRQSSNKTSLRQPAERA
TRADDSHAPPVSAFPKAPLSFKRIRGMSSPGKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGD
TIVSGTEVPIKMGNALPLSAV