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Cla97C11G217855 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C11G217855
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionTBC1 domain family member 13
Genome locationCla97Chr11:23244452..23252133
RNA-Seq ExpressionCla97C11G217855
SyntenyCla97C11G217855
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0090630 - activation of GTPase activity (biological process)
GO:0005096 - GTPase activator activity (molecular function)
InterPro domainsIPR035969 - Rab-GTPase-TBC domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2620153.1 unnamed protein product [Spirodela intermedia]2.8e-0971.7Show/hide
Query:  VQGK-AAKCGLSHTGELLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        VQG+     G S       QDSEIIEQIDRDVKRTHPDMHFFSGDSS AKSNQ
Subjt:  VQGK-AAKCGLSHTGELLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

KAG6793245.1 hypothetical protein POTOM_002442 [Populus tomentosa]3.6e-0979.55Show/hide
Query:  GLSHTGELLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        G S       QDSEIIEQIDRDVKRTHPD+HFFSGDSSLAKSNQ
Subjt:  GLSHTGELLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

OAY84449.1 TBC1 domain family member 13 [Ananas comosus]3.6e-09100Show/hide
Query:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
Subjt:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

XP_020099536.1 TBC domain-containing protein C1952.17c-like isoform X2 [Ananas comosus]3.6e-09100Show/hide
Query:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
Subjt:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

XP_022964438.1 TBC1 domain family member 13-like [Cucurbita moschata]3.6e-09100Show/hide
Query:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
Subjt:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

TrEMBL top hitse value%identityAlignment
A0A0A0LK47 Rab-GAP TBC domain-containing protein1.7e-09100Show/hide
Query:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
Subjt:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

A0A3N7EF82 Rab-GAP TBC domain-containing protein1.7e-0979.55Show/hide
Query:  GLSHTGELLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        G S       QDSEIIEQIDRDVKRTHPD+HFFSGDSSLAKSNQ
Subjt:  GLSHTGELLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

A0A5A7TED9 TBC1 domain family member 131.7e-09100Show/hide
Query:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
Subjt:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

A0A6J1KEH5 TBC1 domain family member 13-like1.7e-09100Show/hide
Query:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
Subjt:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

A0A7I8IQ37 Hypothetical protein1.3e-0971.7Show/hide
Query:  VQGK-AAKCGLSHTGELLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        VQG+     G S       QDSEIIEQIDRDVKRTHPDMHFFSGDSS AKSNQ
Subjt:  VQGK-AAKCGLSHTGELLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G04830.1 Ypt/Rab-GAP domain of gyp1p superfamily protein2.3e-0979.41Show/hide
Query:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        QD+E IEQIDRDVKRTHPD+ FFSG+SS A+SNQ
Subjt:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

AT1G04830.2 Ypt/Rab-GAP domain of gyp1p superfamily protein2.3e-0979.41Show/hide
Query:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        QD+E IEQIDRDVKRTHPD+ FFSG+SS A+SNQ
Subjt:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

AT4G13730.1 Ypt/Rab-GAP domain of gyp1p superfamily protein3.5e-1076.47Show/hide
Query:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        +D+E++EQI+RDV RTHPDMHFFSGDS++AKSNQ
Subjt:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

AT4G13730.2 Ypt/Rab-GAP domain of gyp1p superfamily protein3.5e-1076.47Show/hide
Query:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        +D+E++EQI+RDV RTHPDMHFFSGDS++AKSNQ
Subjt:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

AT4G13730.3 Ypt/Rab-GAP domain of gyp1p superfamily protein3.5e-1076.47Show/hide
Query:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        +D+E++EQI+RDV RTHPDMHFFSGDS++AKSNQ
Subjt:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATGGCGCCGTTGCGCTGGTGTGCAAGGCAAGGCTGCTAAGTGTGGTTTGTCGCACACTGGCGAACTACTCGTTCAAGACTCTGAGATTATAGAACAGATTGACCG
AGATGTGAAGCGTACTCATCCAGATATGCACTTCTTCTCTGGGGACTCATCACTTGCAAAATCTAATCAGGGACAGGTGTTTGCTGTGACACAGCAGGAGGCCGAGGCGA
CATCGGATGTAGTCACGGGAATATGGCGGGTTGCCCAAGTACCTTCTACGAGTCCTTCAGTAAACTTACCAAAAATAACAAATTTTCATTTAAGGAAAACTGGCGCCGCG
GCGCTGATCCAGAGCGCCGTAGTACTAGGGTTGTGTCCAAAATTGTTGCTCTCGGGTTTTAGTGCCGCGGCAGCACCGTCCAAGTGCTGTGACGCTGTGATGTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGATGGCGCCGTTGCGCTGGTGTGCAAGGCAAGGCTGCTAAGTGTGGTTTGTCGCACACTGGCGAACTACTCGTTCAAGACTCTGAGATTATAGAACAGATTGACCG
AGATGTGAAGCGTACTCATCCAGATATGCACTTCTTCTCTGGGGACTCATCACTTGCAAAATCTAATCAGGGACAGGTGTTTGCTGTGACACAGCAGGAGGCCGAGGCGA
CATCGGATGTAGTCACGGGAATATGGCGGGTTGCCCAAGTACCTTCTACGAGTCCTTCAGTAAACTTACCAAAAATAACAAATTTTCATTTAAGGAAAACTGGCGCCGCG
GCGCTGATCCAGAGCGCCGTAGTACTAGGGTTGTGTCCAAAATTGTTGCTCTCGGGTTTTAGTGCCGCGGCAGCACCGTCCAAGTGCTGTGACGCTGTGATGTGTTAA
Protein sequenceShow/hide protein sequence
MRWRRCAGVQGKAAKCGLSHTGELLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQGQVFAVTQQEAEATSDVVTGIWRVAQVPSTSPSVNLPKITNFHLRKTGAA
ALIQSAVVLGLCPKLLLSGFSAAAAPSKCCDAVMC