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Cla97C11G218480 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C11G218480
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionCCHC-type domain-containing protein
Genome locationCla97Chr11:24695691..24700152
RNA-Seq ExpressionCla97C11G218480
SyntenyCla97C11G218480
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
DAD26304.1 TPA_asm: hypothetical protein HUJ06_027772 [Nelumbo nucifera]5.0e-0843.68Show/hide
Query:  EDNVAMEVGKEMMGSSLQVWIPLDITKPLRHGIKLNILDGAIDGRWVPMKYERLLEFCSYCGLVGHEVKGCKL-NLSYPLHLICENI
        EDN  +E GK M GS ++  I +D+ KPL  G  L   +  I   WV   YE L + C YCGLVGH+ K CKL   S PL+ I   +
Subjt:  EDNVAMEVGKEMMGSSLQVWIPLDITKPLRHGIKLNILDGAIDGRWVPMKYERLLEFCSYCGLVGHEVKGCKL-NLSYPLHLICENI

KAE8782072.1 hypothetical protein D1007_44590 [Hordeum vulgare]1.7e-0845.33Show/hide
Query:  VAMEVGKEMM--GSSLQVWIPLDITKPLRHGIKLNILDGAIDGRWVPMKYERLLEFCSYCGLVGHEVKGCKLNLS
        V +EVG++ M  G SL++ + LDITKPL  G  ++  D     RW P +YE L EFC  CG++GHE K C ++L+
Subjt:  VAMEVGKEMM--GSSLQVWIPLDITKPLRHGIKLNILDGAIDGRWVPMKYERLLEFCSYCGLVGHEVKGCKLNLS

TVU42476.1 hypothetical protein EJB05_08883, partial [Eragrostis curvula]3.8e-0832.33Show/hide
Query:  DGAWFIGCGGGHVEEIEDQACASLSKRGEFHGEVGWSCCVCTTIMAGELVVDWHKLSLTRDEDNVAMEVGKEMMGSSLQVWIPLDITKPLRHGIKLNILD
        DG WF+G     +  +E      L +  EFH    W     T I  G  ++D        D+    +EV +   G  L++ + LDI  P+  G+ L + D
Subjt:  DGAWFIGCGGGHVEEIEDQACASLSKRGEFHGEVGWSCCVCTTIMAGELVVDWHKLSLTRDEDNVAMEVGKEMMGSSLQVWIPLDITKPLRHGIKLNILD

Query:  GAIDGRWVPMKYERLLEFCSYCGLVGHEVKGCK
            GRW P++YE L EFC  CG++GH  K C+
Subjt:  GAIDGRWVPMKYERLLEFCSYCGLVGHEVKGCK

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]8.3e-1153.45Show/hide
Query:  GSSLQVWIPLDITKPLRHGIKLNILDGAIDGRWVPMKYERLLEFCSYCGLVGHEVKGC
        G+SL++ + +DITKPLR GIK+NI DG + G W+P++YERL +FC +CG++GH    C
Subjt:  GSSLQVWIPLDITKPLRHGIKLNILDGAIDGRWVPMKYERLLEFCSYCGLVGHEVKGC

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]4.5e-0964Show/hide
Query:  GSSLQVWIPLDITKPLRHGIKLNILDGAIDGRWVPMKYERLLEFCSYCGL
        GS+L+V + LDI+KPLR GIKLN LDG I G W+P++YERL +FC +CGL
Subjt:  GSSLQVWIPLDITKPLRHGIKLNILDGAIDGRWVPMKYERLLEFCSYCGL

TrEMBL top hitse value%identityAlignment
A0A5J9W3H8 Uncharacterized protein (Fragment)1.9e-0832.33Show/hide
Query:  DGAWFIGCGGGHVEEIEDQACASLSKRGEFHGEVGWSCCVCTTIMAGELVVDWHKLSLTRDEDNVAMEVGKEMMGSSLQVWIPLDITKPLRHGIKLNILD
        DG WF+G     +  +E      L +  EFH    W     T I  G  ++D        D+    +EV +   G  L++ + LDI  P+  G+ L + D
Subjt:  DGAWFIGCGGGHVEEIEDQACASLSKRGEFHGEVGWSCCVCTTIMAGELVVDWHKLSLTRDEDNVAMEVGKEMMGSSLQVWIPLDITKPLRHGIKLNILD

Query:  GAIDGRWVPMKYERLLEFCSYCGLVGHEVKGCK
            GRW P++YE L EFC  CG++GH  K C+
Subjt:  GAIDGRWVPMKYERLLEFCSYCGLVGHEVKGCK

A0A6J1DU55 uncharacterized protein LOC1110231354.0e-1153.45Show/hide
Query:  GSSLQVWIPLDITKPLRHGIKLNILDGAIDGRWVPMKYERLLEFCSYCGLVGHEVKGC
        G+SL++ + +DITKPLR GIK+NI DG + G W+P++YERL +FC +CG++GH    C
Subjt:  GSSLQVWIPLDITKPLRHGIKLNILDGAIDGRWVPMKYERLLEFCSYCGLVGHEVKGC

A0A6J1DX30 uncharacterized protein LOC1110248742.2e-0964Show/hide
Query:  GSSLQVWIPLDITKPLRHGIKLNILDGAIDGRWVPMKYERLLEFCSYCGL
        GS+L+V + LDI+KPLR GIKLN LDG I G W+P++YERL +FC +CGL
Subjt:  GSSLQVWIPLDITKPLRHGIKLNILDGAIDGRWVPMKYERLLEFCSYCGL

A0A803LW54 Uncharacterized protein1.9e-0838.83Show/hide
Query:  MAGELVVDWHKLSLTRDEDNVAM-----EVG-------KEMMGSS--LQVWIPLDITKPLRHGIKLNILDGAIDGRWVPMKYERLLEFCSYCGLVGHEVK
        M  EL+ DW KL LT DE+ V +     E+G        + +G +  L++ + +D+ KPLR G+ L +  G    RWV +KYERL EFC +CG + H  K
Subjt:  MAGELVVDWHKLSLTRDEDNVAM-----EVG-------KEMMGSS--LQVWIPLDITKPLRHGIKLNILDGAIDGRWVPMKYERLLEFCSYCGLVGHEVK

Query:  GCK
         C+
Subjt:  GCK

A0A803N142 Uncharacterized protein9.2e-0835.34Show/hide
Query:  MAGELVVDWHKLSLTRDEDNV----AMEVGKEMMGSSLQV-----------------W-------IPLDITKPLRHGIKLNILDGAIDGRWVPMKYERLL
        MA +LV DW KL LT DE  V    ++E  KE  GS++Q+                 W       I +DI KPLR   KL+   G+   +W+ +K ERL 
Subjt:  MAGELVVDWHKLSLTRDEDNV----AMEVGKEMMGSSLQV-----------------W-------IPLDITKPLRHGIKLNILDGAIDGRWVPMKYERLL

Query:  EFCSYCGLVGHEVKGC
        +FC +CG++ H  + C
Subjt:  EFCSYCGLVGHEVKGC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGATTGGTTTGGTTGGGTATCGGCAGCAGTCAACAACAACTTGAAGGATTTTATAGAGAAAACGCCAACAGCTGTTCAGATTCCACCCGATGGTGCCTGG
TTCATCGGCTGTGGGGGCGGGCATGTTGAGGAAATTGAGGACCAAGCCTGTGCCTCTCTATCTAAAAGAGGAGAGTTTCATGGAGAAGTTGGTTGGAGTTGTTGT
GTGTGTACGACCATAATGGCTGGGGAATTGGTAGTAGATTGGCATAAACTTTCCTTGACAAGGGATGAGGATAATGTAGCGATGGAGGTCGGAAAGGAGATGATG
GGATCAAGCTTGCAGGTTTGGATCCCACTGGACATCACCAAGCCATTGAGGCATGGTATCAAGTTGAATATTTTGGATGGGGCGATTGACGGACGTTGGGTTCCA
ATGAAGTATGAGCGGCTGCTTGAGTTTTGCTCTTATTGTGGTTTGGTGGGGCACGAGGTAAAAGGTTGCAAATTAAACCTTAGCTATCCATTACACCTAATATGC
GAGAACATAATCATGCATCGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCGATTGGTTTGGTTGGGTATCGGCAGCAGTCAACAACAACTTGAAGGATTTTATAGAGAAAACGCCAACAGCTGTTCAGATTCCACCCGATGGTGCCTGG
TTCATCGGCTGTGGGGGCGGGCATGTTGAGGAAATTGAGGACCAAGCCTGTGCCTCTCTATCTAAAAGAGGAGAGTTTCATGGAGAAGTTGGTTGGAGTTGTTGT
GTGTGTACGACCATAATGGCTGGGGAATTGGTAGTAGATTGGCATAAACTTTCCTTGACAAGGGATGAGGATAATGTAGCGATGGAGGTCGGAAAGGAGATGATG
GGATCAAGCTTGCAGGTTTGGATCCCACTGGACATCACCAAGCCATTGAGGCATGGTATCAAGTTGAATATTTTGGATGGGGCGATTGACGGACGTTGGGTTCCA
ATGAAGTATGAGCGGCTGCTTGAGTTTTGCTCTTATTGTGGTTTGGTGGGGCACGAGGTAAAAGGTTGCAAATTAAACCTTAGCTATCCATTACACCTAATATGC
GAGAACATAATCATGCATCGTTAA
Protein sequenceShow/hide protein sequence
MSDWFGWVSAAVNNNLKDFIEKTPTAVQIPPDGAWFIGCGGGHVEEIEDQACASLSKRGEFHGEVGWSCCVCTTIMAGELVVDWHKLSLTRDEDNVAMEVGKEMM
GSSLQVWIPLDITKPLRHGIKLNILDGAIDGRWVPMKYERLLEFCSYCGLVGHEVKGCKLNLSYPLHLICENIIMHR