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Clc00G01270 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc00G01270
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTranslocator protein-like protein
Genome locationClcCtg005:139943..140719
RNA-Seq ExpressionClc00G01270
SyntenyClc00G01270
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004307 - TspO/MBR-related protein
IPR038330 - TspO/MBR-related superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0068008.1 translocator protein-like protein [Cucumis melo var. makuwa]2.4e-3379.81Show/hide
Query:  MASTELKHRKTDDSSSPKVPAAD-NGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSLLMGVAA
        MAST+LKHRKTDDS+      AD N   KKA+NK IAKRGL+SLALAISIPVSLTLL IFL SN KNY+ ASA RPFWVPSTKVVNWGSLTSSLLMGVAA
Subjt:  MASTELKHRKTDDSSSPKVPAAD-NGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSLLMGVAA

Query:  WLVW
        WLVW
Subjt:  WLVW

XP_022953735.1 translocator protein homolog [Cucurbita moschata]9.0e-2870.19Show/hide
Query:  MASTELKHRKTDDSSSPKVP-AADNGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSLLMGVAA
        MASTELKHR T D  SP VP AAD  +AK+ KNKAIAKRGLKSLA+A+SIP+++TLLSI LL+ PKNY+  SA +PFWVPS +VVNWGSL SSLLMG+++
Subjt:  MASTELKHRKTDDSSSPKVP-AADNGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSLLMGVAA

Query:  WLVW
        WL W
Subjt:  WLVW

XP_022992488.1 translocator protein homolog [Cucurbita maxima]3.1e-2871.15Show/hide
Query:  MASTELKHRKTDDSSSPKVP-AADNGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSLLMGVAA
        MASTELKHR T D  SP VP AAD  + K+AKNKAIAKRGLKSLA+A+SIP+++TLLSI LLS PKNY+  SA +PFWVPS +VVNWGSL SSLLMG+++
Subjt:  MASTELKHRKTDDSSSPKVP-AADNGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSLLMGVAA

Query:  WLVW
        WL W
Subjt:  WLVW

XP_023548365.1 translocator protein homolog [Cucurbita pepo subsp. pepo]5.6e-3071.84Show/hide
Query:  MASTELKHRKTDDSSSPKVPAADNGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSLLMGVAAW
        MASTELKHR T D  SP  PAAD  +AK+AKNKAIAKRGLKSLA+A+SIP+++TLLSI LLS PKNY+  SA +PFWVPS +VVNWGSL SSLLMG+++W
Subjt:  MASTELKHRKTDDSSSPKVPAADNGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSLLMGVAAW

Query:  LVW
        L W
Subjt:  LVW

XP_038897197.1 translocator protein homolog [Benincasa hispida]8.4e-4290.29Show/hide
Query:  MASTELKHRKTDDSSSPKVPAADNGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSLLMGVAAW
        MASTELKHRKTDDSSSP VPAADNG AKKAKNKAI KRGLKSLALAI+IP+SLTLLS+FLLSNPKNY+ ASAARPFW+PS KVVNWGSLTSSLLMGVAAW
Subjt:  MASTELKHRKTDDSSSPKVPAADNGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSLLMGVAAW

Query:  LVW
        LVW
Subjt:  LVW

TrEMBL top hitse value%identityAlignment
A0A0A0KAU9 Uncharacterized protein6.5e-3276.92Show/hide
Query:  MASTELKHRKTDDSS-SPKVPAADNGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSLLMGVAA
        MAST+LKHRKTDDS+ +  V A DN   KK+KNK IAKRGL+SLALAISIPVSLTL  I L SN KNY+ ASA +PFWVPS KVVNWGSLTSSLLMGVAA
Subjt:  MASTELKHRKTDDSS-SPKVPAADNGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSLLMGVAA

Query:  WLVW
        WLVW
Subjt:  WLVW

A0A5A7VJL5 Translocator protein-like protein1.2e-3379.81Show/hide
Query:  MASTELKHRKTDDSSSPKVPAAD-NGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSLLMGVAA
        MAST+LKHRKTDDS+      AD N   KKA+NK IAKRGL+SLALAISIPVSLTLL IFL SN KNY+ ASA RPFWVPSTKVVNWGSLTSSLLMGVAA
Subjt:  MASTELKHRKTDDSSSPKVPAAD-NGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSLLMGVAA

Query:  WLVW
        WLVW
Subjt:  WLVW

A0A6J1DBR2 translocator protein homolog1.0e-1653.77Show/hide
Query:  MASTELKHRK---TDDSSSPKVPAADNGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSLLMGV
        MAS +LKHRK   +DDS++   PA         K  A A+RGLKSLA+A+S+PVSL+LL+++LLS+P   F  S+ +PFW PS   VN GS  SSLLMG 
Subjt:  MASTELKHRK---TDDSSSPKVPAADNGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSLLMGV

Query:  AAWLVW
        A WLVW
Subjt:  AAWLVW

A0A6J1GQH6 translocator protein homolog4.4e-2870.19Show/hide
Query:  MASTELKHRKTDDSSSPKVP-AADNGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSLLMGVAA
        MASTELKHR T D  SP VP AAD  +AK+ KNKAIAKRGLKSLA+A+SIP+++TLLSI LL+ PKNY+  SA +PFWVPS +VVNWGSL SSLLMG+++
Subjt:  MASTELKHRKTDDSSSPKVP-AADNGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSLLMGVAA

Query:  WLVW
        WL W
Subjt:  WLVW

A0A6J1JZC9 translocator protein homolog1.5e-2871.15Show/hide
Query:  MASTELKHRKTDDSSSPKVP-AADNGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSLLMGVAA
        MASTELKHR T D  SP VP AAD  + K+AKNKAIAKRGLKSLA+A+SIP+++TLLSI LLS PKNY+  SA +PFWVPS +VVNWGSL SSLLMG+++
Subjt:  MASTELKHRKTDDSSSPKVP-AADNGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSLLMGVAA

Query:  WLVW
        WL W
Subjt:  WLVW

SwissProt top hitse value%identityAlignment
O82245 Translocator protein homolog2.2e-0835.45Show/hide
Query:  MASTELKHRKTDDSSSPKV-------PAADNGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSL
        M S ++++R  DD  +           +AD+   K+ + +A+AKRGLKSL +A++ PV +TL + + L     Y    A    W+P   +++   L SS 
Subjt:  MASTELKHRKTDDSSSPKV-------PAADNGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSL

Query:  LMGVAAWLVW
        LMG+AAWLVW
Subjt:  LMGVAAWLVW

Arabidopsis top hitse value%identityAlignment
AT2G47770.1 TSPO(outer membrane tryptophan-rich sensory protein)-related1.5e-0935.45Show/hide
Query:  MASTELKHRKTDDSSSPKV-------PAADNGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSL
        M S ++++R  DD  +           +AD+   K+ + +A+AKRGLKSL +A++ PV +TL + + L     Y    A    W+P   +++   L SS 
Subjt:  MASTELKHRKTDDSSSPKV-------PAADNGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSL

Query:  LMGVAAWLVW
        LMG+AAWLVW
Subjt:  LMGVAAWLVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
atggcttccaccgagcttaagcaccgaaaaacagacgattcctcctcccccaaagtccccgccgccgacaacggcaccgccaagaaagccaagaacaaagccata
gccaaacgaggcctaaagtctctagctcttgcaatctccatccccgtttccctcactctcctctccatcttcctcctgtccaaccccaaaaactacttctcggcc
tccgccgcaaggcccttctgggtcccatcgacgaaggtcgttaattggggatctttgacttccagcttattgatgggcgtcgcggcctggctggtttggggaggg
cgggttccacgccaggcccaacgccctctacctttatggtttgtacttggcgttgtgcgtggcgtggtacggcctcgtgcttggggctggcgcacgacggctcgg
ctctttggcatgtttgggaaaaacggcggcgttggttgggtgcgaccggttgttccgaggtgtgaacccgattgcggcggacttgcttaa
mRNA sequenceShow/hide mRNA sequence
attttatatattatgcgatctaattttgtcgttttgtccaccttctcatcttcttcatcctccacgtgtcctcttccccatttctccacctccttaaatgccttc
tccacttttgtaaatctccaccgaaaaaatggcttccaccgagcttaagcaccgaaaaacagacgattcctcctcccccaaagtccccgccgccgacaacggcac
cgccaagaaagccaagaacaaagccatagccaaacgaggcctaaagtctctagctcttgcaatctccatccccgtttccctcactctcctctccatcttcctcct
gtccaaccccaaaaactacttctcggcctccgccgcaaggcccttctgggtcccatcgacgaaggtcgttaattggggatctttgacttccagcttattgatggg
cgtcgcggcctggctggtttggggagggcgggttccacgccaggcccaacgccctctacctttatggtttgtacttggcgttgtgcgtggcgtggtacggcctcg
tgcttggggctggcgcacgacggctcggctctttggcatgtttgggaaaaacggcggcgttggttgggtgcgaccggttgttccgaggtgtgaacccgattgcgg
cggacttgcttaagccttgtttggtttggtctgtttttcttactgttgtgaatcttactatggcttctctttgaggtctaataataataaatggcatgttgtctt
catgttgtcttgtttgggacactttgctcctttttttttttt
Protein sequenceShow/hide protein sequence
MASTELKHRKTDDSSSPKVPAADNGTAKKAKNKAIAKRGLKSLALAISIPVSLTLLSIFLLSNPKNYFSASAARPFWVPSTKVVNWGSLTSSLLMGVAAWLVWGG
RVPRQAQRPLPLWFVLGVVRGVVRPRAWGWRTTARLFGMFGKNGGVGWVRPVVPRCEPDCGGLA