; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc00G01540 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc00G01540
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein NUCLEAR FUSION DEFECTIVE 6
Genome locationClcCtg008:142287..145524
RNA-Seq ExpressionClc00G01540
SyntenyClc00G01540
Gene Ontology termsNA
InterPro domainsIPR043459 - NFD6/NOXY2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061549.1 protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa]3.4e-3190.32Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ
        MASLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPS ASTSRL CTSRLPVELSSQGSL+PLHSAIAAARLISSLTIES  WGLVPQ
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ

XP_004139345.1 uncharacterized protein LOC101209110 [Cucumis sativus]1.8e-3292.47Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ
        MASLKAVSRLSSRLQSLAPKFNKRSSSSEL  FKSTCQSQPS ASTSRL CTSRLPVELSSQGSL+PLHSAIAAARLISSLTIES  WGLVPQ
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ

XP_008458440.1 PREDICTED: uncharacterized protein LOC103497847 isoform X1 [Cucumis melo]3.4e-3190.32Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ
        MASLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPS ASTSRL CTSRLPVELSSQGSL+PLHSAIAAARLISSLTIES  WGLVPQ
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ

XP_008458447.1 PREDICTED: uncharacterized protein LOC103497847 isoform X2 [Cucumis melo]3.4e-3190.32Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ
        MASLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPS ASTSRL CTSRLPVELSSQGSL+PLHSAIAAARLISSLTIES  WGLVPQ
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ

XP_038889658.1 uncharacterized protein LOC120079520 [Benincasa hispida]7.4e-3493.55Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ
        MASLK VSRLSSRLQSLAPKFNKRSS SELSPFKS CQSQPSTASTSRLPCTSRLPVELSSQGSL+PLHSAIAAARLISSLTIES  WGLVPQ
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ

TrEMBL top hitse value%identityAlignment
A0A0A0LKT5 Uncharacterized protein8.9e-3392.47Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ
        MASLKAVSRLSSRLQSLAPKFNKRSSSSEL  FKSTCQSQPS ASTSRL CTSRLPVELSSQGSL+PLHSAIAAARLISSLTIES  WGLVPQ
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ

A0A1S3C7U8 uncharacterized protein LOC103497847 isoform X11.7e-3190.32Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ
        MASLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPS ASTSRL CTSRLPVELSSQGSL+PLHSAIAAARLISSLTIES  WGLVPQ
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ

A0A1S3C7Z3 uncharacterized protein LOC103497847 isoform X21.7e-3190.32Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ
        MASLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPS ASTSRL CTSRLPVELSSQGSL+PLHSAIAAARLISSLTIES  WGLVPQ
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ

A0A5A7V7B3 Protein NUCLEAR FUSION DEFECTIVE 61.7e-3190.32Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ
        MASLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPS ASTSRL CTSRLPVELSSQGSL+PLHSAIAAARLISSLTIES  WGLVPQ
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ

A0A6J1G399 uncharacterized protein LOC1114503803.7e-3187.1Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ
        MASL+AVSRLSSRLQSLAPK NKRS SSELSPFKS CQSQPS ASTSR+ CTSRLP+ELSSQGSL+PLHSAIAAARLISSL+IES  WGLVPQ
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G55205.1 unknown protein7.0e-1456.84Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRS--SSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ
        MAS   + RLSS++ SL  K +K +   SS  SP KS   S PS+A TSR+  + RLPVELS   S++PLHSAIA+ARLISSL++ES  WGLVPQ
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRS--SSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ

AT1G55205.2 unknown protein7.0e-1456.84Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRS--SSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ
        MAS   + RLSS++ SL  K +K +   SS  SP KS   S PS+A TSR+  + RLPVELS   S++PLHSAIA+ARLISSL++ES  WGLVPQ
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRS--SSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ

AT3G13674.1 unknown protein1.2e-1355.79Show/hide
Query:  MASLKAVSRLSSRLQSLAPKF-NKRSSSSEL-SPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ
        MAS + + R SSRL+SL     NK ++ S L SP KS   + PS+A++ RL  +SRLPVELS   S+IPLHSAIA++RL+SSL++ES  WGLVPQ
Subjt:  MASLKAVSRLSSRLQSLAPKF-NKRSSSSEL-SPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQ

AT4G39300.2 unknown protein6.5e-0438.3Show/hide
Query:  ASLKAVSR-LSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQE
        ++L A SR L SR +++  K      ++  SPF S  QS         +P  SR+   L S  ++IPLHSA+A+ARL SS+  +S  W L+ QE
Subjt:  ASLKAVSR-LSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCTTAAAGGCAGTCTCTCGGTTATCGTCTCGCTTGCAATCCCTCGCTCCAAAGTTCAACAAAAGATCTTCATCTTCTGAGCTATCTCCTTTCAAATCGACTTG
TCAATCTCAGCCTTCCACAGCTTCTACATCGCGTCTTCCTTGCACTTCGCGGTTACCAGTGGAGTTGAGTAGTCAGGGGTCATTGATACCATTACATAGCGCCATAGCTG
CAGCAAGATTGATTTCAAGTCTGACCATTGAATCTCCAAGATGGGGTTTGGTTCCACAGGAAACCAGGCTAAGTCAATCTAGACTGATGCTCAATTGCTTATCTTCGTAT
AAGGCTCGGAGAGTGAAAATAGTGGGAATTTTTACAAAAACCAAGgtatttcaatgcctttatgacggctttgctttgcaggaagttgttctctgtagttttctgtttat
tgacaattga
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCCTTAAAGGCAGTCTCTCGGTTATCGTCTCGCTTGCAATCCCTCGCTCCAAAGTTCAACAAAAGATCTTCATCTTCTGAGCTATCTCCTTTCAAATCGACTTG
TCAATCTCAGCCTTCCACAGCTTCTACATCGCGTCTTCCTTGCACTTCGCGGTTACCAGTGGAGTTGAGTAGTCAGGGGTCATTGATACCATTACATAGCGCCATAGCTG
CAGCAAGATTGATTTCAAGTCTGACCATTGAATCTCCAAGATGGGGTTTGGTTCCACAGGAAACCAGGCTAAGTCAATCTAGACTGATGCTCAATTGCTTATCTTCGTAT
AAGGCTCGGAGAGTGAAAATAGTGGGAATTTTTACAAAAACCAAGgtatttcaatgcctttatgacggctttgctttgcaggaagttgttctctgtagttttctgtttat
tgacaattga
Protein sequenceShow/hide protein sequence
MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESPRWGLVPQETRLSQSRLMLNCLSSY
KARRVKIVGIFTKTKVFQCLYDGFALQEVVLCSFLFIDN