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Clc00G01560 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc00G01560
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDUF4378 domain-containing protein
Genome locationClcCtg008:157187..157907
RNA-Seq ExpressionClc00G01560
SyntenyClc00G01560
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008458399.1 PREDICTED: uncharacterized protein LOC103497820 [Cucumis melo]7.5e-7685.64Show/hide
Query:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWS
        M QDSLSSRIYKSFLTCNDPKGIVDKSTVR+KK APSKMEK  K+R A KNLYEFSDCKL+ E T +KE+RDE SS SSSQLMEVSRGAQKLNRTIDLWS
Subjt:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWS

Query:  NGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYG
        NGMKYD QSDQIARDLFEGALDLQQSLVILGKLQ+ASRYMTQM+KNER +RKT GNMGMERT FN+NEF KP+LSADYSYG
Subjt:  NGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYG

XP_011648656.1 uncharacterized protein LOC105434538 [Cucumis sativus]8.8e-7786.19Show/hide
Query:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWS
        M QDSLSSRIYKSFLTCNDPKGIVDKSTVRKKK APSKMEKR K+R A KNLYEFSDC+L  E T +KE+RDEFSS SSSQLMEVSRGAQKLNRTIDLWS
Subjt:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWS

Query:  NGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYG
        NGMKYD QSDQIARDLFEGALDLQQSLVILGKLQ+ASRYMT+M+KNER +RKT GNMGMERT FN+NEF KP+LSADYSYG
Subjt:  NGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYG

XP_022938261.1 uncharacterized protein LOC111444401 [Cucurbita moschata]3.6e-7077.9Show/hide
Query:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWS
        MPQ+SL SRIY+SF+TCNDPKGIVDKS++R KKV  S+M+K+ KSRTARKN YEFSDCKL  EETT+KE+ DE SS SSSQLMEVSR AQKLNRTI LWS
Subjt:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWS

Query:  NGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYG
        NGMKY+ QS+QIARDLFEGA+DLQQSLVILGKLQ+ SRYMTQ++KNE I+++T+GNMGMERT FN+NE  KPRLSADYSYG
Subjt:  NGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYG

XP_023536795.1 uncharacterized protein LOC111798072 [Cucurbita pepo subsp. pepo]7.3e-7178.45Show/hide
Query:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWS
        MPQ+SL SRIY+SF+TCNDPKGIVDKS++R KKV  S+M+K+ KSRTARKN YEFSDCKL  EETT+KE+ DE SS SSSQLMEVSR AQKLNRTI LWS
Subjt:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWS

Query:  NGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYG
        NGMKY+ QS+QIARDLFEGA+DLQQSLVILGKLQ+ASRYMTQ++KNE I+++T+GNMGMERT FN+NEF KPRLS DYSYG
Subjt:  NGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYG

XP_038889585.1 uncharacterized protein LOC120079462 [Benincasa hispida]2.0e-8188.4Show/hide
Query:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWS
        MPQDSLSSRIYKSFLTCN+PKGIVDKSTVRKKKVAPSKMEKR++SRT RK LYEFSDCKL+GE+TT KE+RDEFSS SSSQLMEVSRGAQKLNRTIDLWS
Subjt:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWS

Query:  NGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYG
        NGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQ+ SRYMTQM+K+ER++RKTTGN+ M+R  FNQNEFQKPRLSADYSYG
Subjt:  NGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYG

TrEMBL top hitse value%identityAlignment
A0A0A0LFV4 Uncharacterized protein4.3e-7786.19Show/hide
Query:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWS
        M QDSLSSRIYKSFLTCNDPKGIVDKSTVRKKK APSKMEKR K+R A KNLYEFSDC+L  E T +KE+RDEFSS SSSQLMEVSRGAQKLNRTIDLWS
Subjt:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWS

Query:  NGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYG
        NGMKYD QSDQIARDLFEGALDLQQSLVILGKLQ+ASRYMT+M+KNER +RKT GNMGMERT FN+NEF KP+LSADYSYG
Subjt:  NGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYG

A0A1S3C7S3 uncharacterized protein LOC1034978203.6e-7685.64Show/hide
Query:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWS
        M QDSLSSRIYKSFLTCNDPKGIVDKSTVR+KK APSKMEK  K+R A KNLYEFSDCKL+ E T +KE+RDE SS SSSQLMEVSRGAQKLNRTIDLWS
Subjt:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWS

Query:  NGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYG
        NGMKYD QSDQIARDLFEGALDLQQSLVILGKLQ+ASRYMTQM+KNER +RKT GNMGMERT FN+NEF KP+LSADYSYG
Subjt:  NGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYG

A0A5D3CG00 Biorientation of chromosomes in cell division protein 1-like 13.6e-7685.64Show/hide
Query:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWS
        M QDSLSSRIYKSFLTCNDPKGIVDKSTVR+KK APSKMEK  K+R A KNLYEFSDCKL+ E T +KE+RDE SS SSSQLMEVSRGAQKLNRTIDLWS
Subjt:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWS

Query:  NGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYG
        NGMKYD QSDQIARDLFEGALDLQQSLVILGKLQ+ASRYMTQM+KNER +RKT GNMGMERT FN+NEF KP+LSADYSYG
Subjt:  NGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYG

A0A6J1FDK4 uncharacterized protein LOC1114444011.7e-7077.9Show/hide
Query:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWS
        MPQ+SL SRIY+SF+TCNDPKGIVDKS++R KKV  S+M+K+ KSRTARKN YEFSDCKL  EETT+KE+ DE SS SSSQLMEVSR AQKLNRTI LWS
Subjt:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWS

Query:  NGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYG
        NGMKY+ QS+QIARDLFEGA+DLQQSLVILGKLQ+ SRYMTQ++KNE I+++T+GNMGMERT FN+NE  KPRLSADYSYG
Subjt:  NGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYG

A0A6J1HRF8 uncharacterized protein LOC1114654492.3e-7078.45Show/hide
Query:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWS
        MPQDSL SRIY+SF+TCNDPKGIVDK+TVR KKV  S+M+K+ KSRTARKN YEFS CKL  EETT+KE+ DE SS SSSQLMEVSR AQKLNRTI LWS
Subjt:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWS

Query:  NGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYG
        NGMKY+ QS+QIARDLFEGA+DLQQSLVILGKLQ+ASRYMTQ++KNE I+++T+GNMGMERT FN+NEF KP+LS DYSYG
Subjt:  NGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24630.1 unknown protein1.5e-1333.77Show/hide
Query:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTV--KELRDEFSSPSSSQLMEVSRGAQKLNRTIDL
        MP+  L S +Y+SF+ C+DP+ +V+   ++K+        K   S T ++     S  K + E      K    E   PSS QL+ VS+G QKLN  I+ 
Subjt:  MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTV--KELRDEFSSPSSSQLMEVSRGAQKLNRTIDL

Query:  WSNGMKYDRQS--DQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNE
         S G  ++  S  + IA+DL  GALDL++SL +L  +Q+       M +N+
Subjt:  WSNGMKYDRQS--DQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNE

AT5G42710.1 unknown protein8.4e-0938.46Show/hide
Query:  ETTVKELRDEFSSPSSSQLM------EVSRGAQKLNRTIDLWSNGMKY--DRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERID-RKTT
        ET   ++  +   PSSS  M      E+S+GAQKLN+ I+  SNG+ +   R S Q    L EGA++L+QSL +L  +Q+AS Y +  R+  RI   +  
Subjt:  ETTVKELRDEFSSPSSSQLM------EVSRGAQKLNRTIDLWSNGMKY--DRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERID-RKTT

Query:  GNMGMERTRFNQNEFQK
        G+   E    NQN +QK
Subjt:  GNMGMERTRFNQNEFQK

AT5G42710.2 unknown protein8.4e-0938.46Show/hide
Query:  ETTVKELRDEFSSPSSSQLM------EVSRGAQKLNRTIDLWSNGMKY--DRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERID-RKTT
        ET   ++  +   PSSS  M      E+S+GAQKLN+ I+  SNG+ +   R S Q    L EGA++L+QSL +L  +Q+AS Y +  R+  RI   +  
Subjt:  ETTVKELRDEFSSPSSSQLM------EVSRGAQKLNRTIDLWSNGMKY--DRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERID-RKTT

Query:  GNMGMERTRFNQNEFQK
        G+   E    NQN +QK
Subjt:  GNMGMERTRFNQNEFQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
atgcctcaggacagtttaagctcaagaatttacaaatcatttctaacttgtaacgatcccaaaggcatagttgataagagcactgtcagaaaaaagaaagttgctccatc
aaaaatggagaaacgggtcaaaagccggacagctaggaagaacttatacgaattttcagactgtaagttacaaggagaggaaacaaccgtcaaagaactaagagatgaat
tcagtagtccatcctcatctcaacttatggaagtgtccagaggagctcagaagctgaatcggacaattgatttgtggtctaatgggatgaaatatgatagacaatctgac
caaattgcaagagatttgtttgaaggagctcttgatttgcagcagtccttggtcattctagggaaattgcagaaagcttcaaggtatatgactcagatgaggaaaaatga
acggatagacaggaaaacaactggaaatatgggcatggagagaacacgcttcaaccaaaatgaatttcaaaaaccccggctttcggctgattattcttatggaatggtgc
tgaggaactga
mRNA sequenceShow/hide mRNA sequence
gccaaacaggtgaaaacaatctcagagcttgaaattattatatgatatccaaaaccatgcagagttatgtaggaatttttggaaatggtttgtggaatatcaatagtgtt
agcatctgactctgctctgccaatgtatatgagatctcaatcaacaagatatgcctcaggacagtttaagctcaagaatttacaaatcatttctaacttgtaacgatccc
aaaggcatagttgataagagcactgtcagaaaaaagaaagttgctccatcaaaaatggagaaacgggtcaaaagccggacagctaggaagaacttatacgaattttcaga
ctgtaagttacaaggagaggaaacaaccgtcaaagaactaagagatgaattcagtagtccatcctcatctcaacttatggaagtgtccagaggagctcagaagctgaatc
ggacaattgatttgtggtctaatgggatgaaatatgatagacaatctgaccaaattgcaagagatttgtttgaaggagctcttgatttgcagcagtccttggtcattcta
gggaaattgcagaaagcttcaaggtatatgactcagatgaggaaaaatgaacggatagacaggaaaacaactggaaatatgggcatggagagaacacgcttcaaccaaaa
tgaatttcaaaaaccccggctttcggctgattattcttatggaatggtgctgaggaactga
Protein sequenceShow/hide protein sequence
MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWSNGMKYDRQSD
QIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYGMVLRN