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Clc00G02090 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc00G02090
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionAuxin-responsive protein
Genome locationClcCtg010:89873..90390
RNA-Seq ExpressionClc00G02090
SyntenyClc00G02090
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009734 - auxin-activated signaling pathway (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008455985.1 PREDICTED: auxin-responsive protein IAA16 isoform X1 [Cucumis melo]1.8e-2986.21Show/hide
Query:  MESGQNDECRAILINFEQTELRLGLPGGE-IGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK
        MESG+NDE  AILINFEQTELRLGLPGG+  GGGKS+SAGKRGFMETVDLKLNL+SSMAS KEE TNLEEIKS SQ+PNDFAKPPSK
Subjt:  MESGQNDECRAILINFEQTELRLGLPGGE-IGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK

XP_008455992.1 PREDICTED: auxin-responsive protein IAA16 isoform X2 [Cucumis melo]1.8e-2986.21Show/hide
Query:  MESGQNDECRAILINFEQTELRLGLPGGE-IGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK
        MESG+NDE  AILINFEQTELRLGLPGG+  GGGKS+SAGKRGFMETVDLKLNL+SSMAS KEE TNLEEIKS SQ+PNDFAKPPSK
Subjt:  MESGQNDECRAILINFEQTELRLGLPGGE-IGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK

XP_011648754.1 auxin-responsive protein IAA16 [Cucumis sativus]1.0e-3290.7Show/hide
Query:  MESGQNDECRAILINFEQTELRLGLPGGEIGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK
        MESGQNDE RAILINFEQTELRLGLPGG+ GGGKS+SAGKRGFMETVDLKLNL+SSMAS KEEATNLEEIK+SSQ+PNDFAKPPSK
Subjt:  MESGQNDECRAILINFEQTELRLGLPGGEIGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK

XP_022999097.1 auxin-responsive protein IAA14-like [Cucurbita maxima]8.1e-3087.64Show/hide
Query:  MESGQNDECRAILINFEQTELRLGLPGGEIG---GGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK
        MES QNDE RAILINFEQTELRLGLPGG+ G   GGKSNSA KRGFMETVDLKLNLSSSMA  KEEATNLEE KSSSQRPNDFAKPPSK
Subjt:  MESGQNDECRAILINFEQTELRLGLPGGEIG---GGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK

XP_038890917.1 auxin-responsive protein IAA16-like [Benincasa hispida]2.1e-3086.52Show/hide
Query:  MESGQNDECRAILINFEQTELRLGLP---GGEIGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK
        MESGQNDE RAILINFEQTELRLGLP   GGE+ GGKS+SAGKRGFMETVDLKLNLS +MASVKEE TNLEEIK+SSQR NDFAKPPSK
Subjt:  MESGQNDECRAILINFEQTELRLGLP---GGEIGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK

TrEMBL top hitse value%identityAlignment
A0A0A0LG78 Auxin-responsive protein4.9e-3390.7Show/hide
Query:  MESGQNDECRAILINFEQTELRLGLPGGEIGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK
        MESGQNDE RAILINFEQTELRLGLPGG+ GGGKS+SAGKRGFMETVDLKLNL+SSMAS KEEATNLEEIK+SSQ+PNDFAKPPSK
Subjt:  MESGQNDECRAILINFEQTELRLGLPGGEIGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK

A0A1S3C1R1 Auxin-responsive protein8.7e-3086.21Show/hide
Query:  MESGQNDECRAILINFEQTELRLGLPGGE-IGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK
        MESG+NDE  AILINFEQTELRLGLPGG+  GGGKS+SAGKRGFMETVDLKLNL+SSMAS KEE TNLEEIKS SQ+PNDFAKPPSK
Subjt:  MESGQNDECRAILINFEQTELRLGLPGGE-IGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK

A0A1S3C1R6 Auxin-responsive protein8.7e-3086.21Show/hide
Query:  MESGQNDECRAILINFEQTELRLGLPGGE-IGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK
        MESG+NDE  AILINFEQTELRLGLPGG+  GGGKS+SAGKRGFMETVDLKLNL+SSMAS KEE TNLEEIKS SQ+PNDFAKPPSK
Subjt:  MESGQNDECRAILINFEQTELRLGLPGGE-IGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK

A0A5D3D4G0 Auxin-responsive protein IAA16 isoform X28.7e-3086.21Show/hide
Query:  MESGQNDECRAILINFEQTELRLGLPGGE-IGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK
        MESG+NDE  AILINFEQTELRLGLPGG+  GGGKS+SAGKRGFMETVDLKLNL+SSMAS KEE TNLEEIKS SQ+PNDFAKPPSK
Subjt:  MESGQNDECRAILINFEQTELRLGLPGGE-IGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK

A0A6J1K9W5 Auxin-responsive protein3.9e-3087.64Show/hide
Query:  MESGQNDECRAILINFEQTELRLGLPGGEIG---GGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK
        MES QNDE RAILINFEQTELRLGLPGG+ G   GGKSNSA KRGFMETVDLKLNLSSSMA  KEEATNLEE KSSSQRPNDFAKPPSK
Subjt:  MESGQNDECRAILINFEQTELRLGLPGGEIG---GGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK

SwissProt top hitse value%identityAlignment
O24407 Auxin-responsive protein IAA161.6e-0957.69Show/hide
Query:  LINFEQTELRLGLPGGEIGG---GKSNSAGKRGFMETVDLKLNLSS-SMASVKEEATNLEEIKSSSQRPNDFAKPPSK
        +INFE TELRLGLPGG  GG   GK+N  GKRGF ETVDLKLNLSS +M SV +   +LE +K          KPP+K
Subjt:  LINFEQTELRLGLPGGEIGG---GKSNSAGKRGFMETVDLKLNLSS-SMASVKEEATNLEEIKSSSQRPNDFAKPPSK

P0C132 Auxin-responsive protein IAA301.9e-0541.46Show/hide
Query:  FEQTELRLGLPGGEIGGGKS-----NSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQR-------PNDFAKPPS
        FE TELRLGLPGG   G  +     +S+GKRGF ET+DLKL L  + A+V ++    E      ++        ND A PP+
Subjt:  FEQTELRLGLPGGEIGGGKS-----NSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQR-------PNDFAKPPS

P93830 Auxin-responsive protein IAA172.9e-0645Show/hide
Query:  AILINFEQTELRLGLPGGEIGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEI----KSSSQRPNDFAKPPSK
        ++ +N  +TEL LGLPGG+     + +  KRGF ETVDLKLNL++  A+ KE +T  + +    K  S  P D AKPP+K
Subjt:  AILINFEQTELRLGLPGGEIGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEI----KSSSQRPNDFAKPPSK

Q38832 Auxin-responsive protein IAA143.6e-0443.42Show/hide
Query:  INFEQTELRLGLPGGE---IGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK
        +N ++TEL LGLPGG        KS    KRGF ETVDLKLNL S+     +  TN       + +   F K PSK
Subjt:  INFEQTELRLGLPGGE---IGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK

Q75GK0 Auxin-responsive protein IAA112.7e-0443.55Show/hide
Query:  INFEQTELRLGLPG-GEIGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSS
        + F++TELRLGLPG GE+    + S+GKRGF ET+DLKL L  +  +        +E K  +
Subjt:  INFEQTELRLGLPG-GEIGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSS

Arabidopsis top hitse value%identityAlignment
AT1G04250.1 AUX/IAA transcriptional regulator family protein2.1e-0745Show/hide
Query:  AILINFEQTELRLGLPGGEIGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEI----KSSSQRPNDFAKPPSK
        ++ +N  +TEL LGLPGG+     + +  KRGF ETVDLKLNL++  A+ KE +T  + +    K  S  P D AKPP+K
Subjt:  AILINFEQTELRLGLPGGEIGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEI----KSSSQRPNDFAKPPSK

AT3G04730.1 indoleacetic acid-induced protein 161.2e-1057.69Show/hide
Query:  LINFEQTELRLGLPGGEIGG---GKSNSAGKRGFMETVDLKLNLSS-SMASVKEEATNLEEIKSSSQRPNDFAKPPSK
        +INFE TELRLGLPGG  GG   GK+N  GKRGF ETVDLKLNLSS +M SV +   +LE +K          KPP+K
Subjt:  LINFEQTELRLGLPGGEIGG---GKSNSAGKRGFMETVDLKLNLSS-SMASVKEEATNLEEIKSSSQRPNDFAKPPSK

AT3G23050.1 indole-3-acetic acid 75.6e-0541.56Show/hide
Query:  LINFEQTELRLGLPGGE---IGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK
        L+N + TEL LGLPGG        KS    KRGF ETVDL LNL S+      +  N+  +        D +KPP+K
Subjt:  LINFEQTELRLGLPGGE---IGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK

AT3G23050.2 indole-3-acetic acid 75.6e-0541.56Show/hide
Query:  LINFEQTELRLGLPGGE---IGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK
        L+N + TEL LGLPGG        KS    KRGF ETVDL LNL S+      +  N+  +        D +KPP+K
Subjt:  LINFEQTELRLGLPGGE---IGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK

AT4G14550.1 indole-3-acetic acid inducible 142.5e-0543.42Show/hide
Query:  INFEQTELRLGLPGGE---IGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK
        +N ++TEL LGLPGG        KS    KRGF ETVDLKLNL S+     +  TN       + +   F K PSK
Subjt:  INFEQTELRLGLPGGE---IGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
atgaatataatatccaataattccaatccccaaatctcaaattcgtcagttctcagaaacaaaatttttcgatctcagcgatttcagaaccaaaatcagaacaattttag
gcaaaatttcagacgaaaagggggaaagaaaaaaaaaagagaacagagtggcaaagttatggaatcggggcagaacgatgagtgcagagcgatcttgatcaatttcgagc
aaacggagctccgcctgggattgcccggcggcgaaatcggcggcggaaagagtaattcggctgggaagagagggtttatggaaactgtggatttgaagcttaatttatct
tcttcaatggcgtcggtgaaggaggaagcgacgaatttggaagagattaaaagttcttcgcaacggcctaacgattttgctaaacctccttccaagtaa
mRNA sequenceShow/hide mRNA sequence
aaaaccgtcatttcaactcaaatttcaaccacatttttccaaaagaaagaaaaagtaggtccatttcgcagtacataataatgaatataatatccaataattccaatccc
caaatctcaaattcgtcagttctcagaaacaaaatttttcgatctcagcgatttcagaaccaaaatcagaacaattttaggcaaaatttcagacgaaaagggggaaagaa
aaaaaaaagagaacagagtggcaaagttatggaatcggggcagaacgatgagtgcagagcgatcttgatcaatttcgagcaaacggagctccgcctgggattgcccggcg
gcgaaatcggcggcggaaagagtaattcggctgggaagagagggtttatggaaactgtggatttgaagcttaatttatcttcttcaatggcgtcggtgaaggaggaagcg
acgaatttggaagagattaaaagttcttcgcaacggcctaacgattttgctaaacctccttccaagtaaaaaatttcc
Protein sequenceShow/hide protein sequence
MNIISNNSNPQISNSSVLRNKIFRSQRFQNQNQNNFRQNFRRKGGKKKKREQSGKVMESGQNDECRAILINFEQTELRLGLPGGEIGGGKSNSAGKRGFMETVDLKLNLS
SSMASVKEEATNLEEIKSSSQRPNDFAKPPSK