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Clc00G02100 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc00G02100
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionAuxin-responsive protein
Genome locationClcCtg010:93090..96615
RNA-Seq ExpressionClc00G02100
SyntenyClc00G02100
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009734 - auxin-activated signaling pathway (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR000270 - PB1 domain
IPR003311 - AUX/IAA protein
IPR033389 - AUX/IAA domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599310.1 Auxin-responsive protein IAA16, partial [Cucurbita argyrosperma subsp. sororia]1.5e-5986.23Show/hide
Query:  KEEFGAARNGGDD----GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLV
        ++  GA R GG+D    GGASFVKVS+DGAPYLRKVDLKLY+SYK+LSHALAKMFSSFTIG  ESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLV
Subjt:  KEEFGAARNGGDD----GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLV

Query:  GDVPWEMFVDSCKRLRIMKESEAIGLAPRAMEKQKNRS
        GDVPWEMFVDSCKRLRIMKESEAIGLAPR MEK K RS
Subjt:  GDVPWEMFVDSCKRLRIMKESEAIGLAPRAMEKQKNRS

XP_008455985.1 PREDICTED: auxin-responsive protein IAA16 isoform X1 [Cucumis melo]7.2e-5989.76Show/hide
Query:  AARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFV
        ++R GGD+GG SFVKVS+DGAPYLRKVDLKLY SYK+LSHALAKMFSSFTIGK ESEGMKDFMNE K VDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFV
Subjt:  AARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFV

Query:  DSCKRLRIMKESEAIGLAPRAMEKQKN
        DSCKRLRIMKES+AIGLAPR+MEKQKN
Subjt:  DSCKRLRIMKESEAIGLAPRAMEKQKN

XP_022946129.1 auxin-responsive protein IAA14-like isoform X1 [Cucurbita moschata]2.5e-5985.4Show/hide
Query:  KEEFGAARNGGDD---GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVG
        ++  GA R GG+D   GG +FVKVS+DGAPYLRKVDLKLY SYK+LSHALAKMFSSFT+G  ESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVG
Subjt:  KEEFGAARNGGDD---GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVG

Query:  DVPWEMFVDSCKRLRIMKESEAIGLAPRAMEKQKNRS
        DVPWEMFVDSCKRLRIMKESEAIGLAPR MEK KNRS
Subjt:  DVPWEMFVDSCKRLRIMKESEAIGLAPRAMEKQKNRS

XP_022999097.1 auxin-responsive protein IAA14-like [Cucurbita maxima]7.2e-5985.51Show/hide
Query:  KEEFGAARNGGDD----GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLV
        ++  GA R GG+D    GGASFVKVS+DGAPYLRKVDLKLY SYK+LSHALAKMFSSFTIG  ESEGMKDFMNERKLVDLLNGS+YVPTYEDKDGDWMLV
Subjt:  KEEFGAARNGGDD----GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLV

Query:  GDVPWEMFVDSCKRLRIMKESEAIGLAPRAMEKQKNRS
        GDVPW MFVDSCKRLRIMKESEAIGLAPR MEK KNRS
Subjt:  GDVPWEMFVDSCKRLRIMKESEAIGLAPRAMEKQKNRS

XP_023521167.1 auxin-responsive protein IAA16-like isoform X2 [Cucurbita pepo subsp. pepo]5.0e-6088.15Show/hide
Query:  KEEFGAARNGGDD-GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDV
        ++  GA R GG+D GGASFVKVS+DGAPYLRKVDLKLY+SYK+LSHALAKMFSSFTIG  ESEGMKDFM+ERKLVDLLNGSEYVPTYEDKDGDWMLVGDV
Subjt:  KEEFGAARNGGDD-GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDV

Query:  PWEMFVDSCKRLRIMKESEAIGLAPRAMEKQKNRS
        PWEMFVDSCKRLRIMKESEAIGLAPR MEK KNRS
Subjt:  PWEMFVDSCKRLRIMKESEAIGLAPRAMEKQKNRS

TrEMBL top hitse value%identityAlignment
A0A0A0LG78 Auxin-responsive protein1.7e-5889.92Show/hide
Query:  AARNGGDDGGA--SFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWEM
        ++R GGD+GGA  SFVKVS+DGAPYLRKVDLKLYASYKELSHALA+MFSSFTIGK ESEGMKDFMNE K VDLLNGSEYVPTYEDKDGDWMLVGDVPWEM
Subjt:  AARNGGDDGGA--SFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWEM

Query:  FVDSCKRLRIMKESEAIGLAPRAMEKQKN
        FVDSCKRLRIMKES+AIGLAPR+MEKQKN
Subjt:  FVDSCKRLRIMKESEAIGLAPRAMEKQKN

A0A1S3C1R1 Auxin-responsive protein3.5e-5989.76Show/hide
Query:  AARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFV
        ++R GGD+GG SFVKVS+DGAPYLRKVDLKLY SYK+LSHALAKMFSSFTIGK ESEGMKDFMNE K VDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFV
Subjt:  AARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFV

Query:  DSCKRLRIMKESEAIGLAPRAMEKQKN
        DSCKRLRIMKES+AIGLAPR+MEKQKN
Subjt:  DSCKRLRIMKESEAIGLAPRAMEKQKN

A0A6J1CMJ1 Auxin-responsive protein1.4e-5587.02Show/hide
Query:  AARNGGDD-GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEG-MKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWEM
        A RNGGD+ GGASFVKVS+DGAPYLRKVDLKLY+SYK+LSHALA+MFSSFTIGK +SEG MKDFMN+ KL DLLN SEYVPTYEDKDGDWMLVGDVPWEM
Subjt:  AARNGGDD-GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEG-MKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWEM

Query:  FVDSCKRLRIMKESEAIGLAPRAMEKQKNRS
        FVDSCKRLRIMK SEAIGLAPRA+EK KNRS
Subjt:  FVDSCKRLRIMKESEAIGLAPRAMEKQKNRS

A0A6J1G2X5 Auxin-responsive protein1.2e-5985.4Show/hide
Query:  KEEFGAARNGGDD---GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVG
        ++  GA R GG+D   GG +FVKVS+DGAPYLRKVDLKLY SYK+LSHALAKMFSSFT+G  ESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVG
Subjt:  KEEFGAARNGGDD---GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVG

Query:  DVPWEMFVDSCKRLRIMKESEAIGLAPRAMEKQKNRS
        DVPWEMFVDSCKRLRIMKESEAIGLAPR MEK KNRS
Subjt:  DVPWEMFVDSCKRLRIMKESEAIGLAPRAMEKQKNRS

A0A6J1K9W5 Auxin-responsive protein3.5e-5985.51Show/hide
Query:  KEEFGAARNGGDD----GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLV
        ++  GA R GG+D    GGASFVKVS+DGAPYLRKVDLKLY SYK+LSHALAKMFSSFTIG  ESEGMKDFMNERKLVDLLNGS+YVPTYEDKDGDWMLV
Subjt:  KEEFGAARNGGDD----GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLV

Query:  GDVPWEMFVDSCKRLRIMKESEAIGLAPRAMEKQKNRS
        GDVPW MFVDSCKRLRIMKESEAIGLAPR MEK KNRS
Subjt:  GDVPWEMFVDSCKRLRIMKESEAIGLAPRAMEKQKNRS

SwissProt top hitse value%identityAlignment
O24407 Auxin-responsive protein IAA162.3e-5275.38Show/hide
Query:  GAARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWEMF
        GA  +       ++VKVS+DGAPYLRK+DLKLY +Y++LS+AL+KMFSSFTIG +  +GMKDFMNE KL+DLLNGS+YVPTYEDKDGDWMLVGDVPWEMF
Subjt:  GAARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWEMF

Query:  VDSCKRLRIMKESEAIGLAPRAMEKQKNRS
        VDSCKR+RIMK SEAIGLAPRA+EK KNRS
Subjt:  VDSCKRLRIMKESEAIGLAPRAMEKQKNRS

P0C132 Auxin-responsive protein IAA304.9e-5077.61Show/hide
Query:  AARNGGDDGG-----ASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVP
        AA  GGD  G     A+FVKVS+DGAPYLRKVDLK+Y SY ELS AL KMFSSFTIG   S G+   MNE K+ DLLNGSEYVPTYEDKDGDWMLVGDVP
Subjt:  AARNGGDDGG-----ASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVP

Query:  WEMFVDSCKRLRIMKESEAIGLAPRAMEKQKNRS
        WEMFV+SCKRLRIMK SEAIGLAPRAMEK KNRS
Subjt:  WEMFVDSCKRLRIMKESEAIGLAPRAMEKQKNRS

P13089 Auxin-induced protein AUX282.2e-5071.63Show/hide
Query:  NQHIIKEEFGAARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWML
        N   +++  G          ASFVKVS+DGAPYLRKVDLK+Y SY+ELS +L KMFSSFT G  ES+GMKDFMNE KL DLLN S+YVPTYEDKDGDWML
Subjt:  NQHIIKEEFGAARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWML

Query:  VGDVPWEMFVDSCKRLRIMKESEAI--GLAPRAMEKQKNRS
        VGDVPWEMFV+SCKRLRIMK  EAI  GLAPRAM K KNRS
Subjt:  VGDVPWEMFVDSCKRLRIMKESEAI--GLAPRAMEKQKNRS

Q38825 Auxin-responsive protein IAA72.2e-5076.15Show/hide
Query:  AARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFV
        A   GG   GA  VKVS+DGAPYLRKVDLK+Y SY++LS ALAKMFSSFT+G + ++GM DFMNE KL++LLN SEYVP+YEDKDGDWMLVGDVPWEMFV
Subjt:  AARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFV

Query:  DSCKRLRIMKESEAIGLAPRAMEKQ-KNRS
        +SCKRLRIMK SEA+GLAPRAMEK  KNRS
Subjt:  DSCKRLRIMKESEAIGLAPRAMEKQ-KNRS

Q38832 Auxin-responsive protein IAA142.6e-5166.45Show/hide
Query:  IIVWVELELNLNQHIIKEEFGAARNGGDDGG--ASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEY
        ++ W  +       +  ++ G A      GG   +FVKVS+DGAPYLRKVDLK+Y SYK+LS ALAKMFSSFT+G + ++GM DFMNE K++DLLN SEY
Subjt:  IIVWVELELNLNQHIIKEEFGAARNGGDDGG--ASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEY

Query:  VPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKESEAIGLAPRAMEKQKNRS
        VP+YEDKDGDWMLVGDVPW MFV+SCKRLRIMK SEAIGLAPRAMEK KNRS
Subjt:  VPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKESEAIGLAPRAMEKQKNRS

Arabidopsis top hitse value%identityAlignment
AT1G04250.1 AUX/IAA transcriptional regulator family protein6.1e-4871.09Show/hide
Query:  RNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGK-WESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVD
        ++ G    A+FVKVS+DGAPYLRK+DL++Y SY ELS+AL+ MFSSFT+GK    EGM DFMNERKL+DL+N  +YVP+YEDKDGDWMLVGDVPW MFVD
Subjt:  RNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGK-WESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVD

Query:  SCKRLRIMKESEAIGLAPRAMEKQKNRS
        +CKRLR+MK S+AIGLAPRAMEK K+R+
Subjt:  SCKRLRIMKESEAIGLAPRAMEKQKNRS

AT3G04730.1 indoleacetic acid-induced protein 161.7e-5375.38Show/hide
Query:  GAARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWEMF
        GA  +       ++VKVS+DGAPYLRK+DLKLY +Y++LS+AL+KMFSSFTIG +  +GMKDFMNE KL+DLLNGS+YVPTYEDKDGDWMLVGDVPWEMF
Subjt:  GAARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWEMF

Query:  VDSCKRLRIMKESEAIGLAPRAMEKQKNRS
        VDSCKR+RIMK SEAIGLAPRA+EK KNRS
Subjt:  VDSCKRLRIMKESEAIGLAPRAMEKQKNRS

AT3G23050.1 indole-3-acetic acid 71.6e-5176.15Show/hide
Query:  AARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFV
        A   GG   GA  VKVS+DGAPYLRKVDLK+Y SY++LS ALAKMFSSFT+G + ++GM DFMNE KL++LLN SEYVP+YEDKDGDWMLVGDVPWEMFV
Subjt:  AARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFV

Query:  DSCKRLRIMKESEAIGLAPRAMEKQ-KNRS
        +SCKRLRIMK SEA+GLAPRAMEK  KNRS
Subjt:  DSCKRLRIMKESEAIGLAPRAMEKQ-KNRS

AT4G14550.1 indole-3-acetic acid inducible 141.8e-5266.45Show/hide
Query:  IIVWVELELNLNQHIIKEEFGAARNGGDDGG--ASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEY
        ++ W  +       +  ++ G A      GG   +FVKVS+DGAPYLRKVDLK+Y SYK+LS ALAKMFSSFT+G + ++GM DFMNE K++DLLN SEY
Subjt:  IIVWVELELNLNQHIIKEEFGAARNGGDDGG--ASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLLNGSEY

Query:  VPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKESEAIGLAPRAMEKQKNRS
        VP+YEDKDGDWMLVGDVPW MFV+SCKRLRIMK SEAIGLAPRAMEK KNRS
Subjt:  VPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKESEAIGLAPRAMEKQKNRS

AT5G65670.2 indole-3-acetic acid inducible 91.2e-4367.19Show/hide
Query:  NGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGM--KDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVD
        +G    GA FVKVS+DGAPYLRKVDL+ Y +Y ELS AL KMF++FT+G+  S G   KD ++E KL DLLNG +YV TYEDKDGDWMLVGDVPWEMF+D
Subjt:  NGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGM--KDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVD

Query:  SCKRLRIMKESEAIGLAPRAMEKQKNRS
         CK+L+IMK  +AIGLAPRAMEK K R+
Subjt:  SCKRLRIMKESEAIGLAPRAMEKQKNRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
atgcccatggcccgatctttgggcttggctcattggatcatagtttgggtcgagctggagttgaatttgaatcagcatatcatcaaggaagaatttggagcggcg
aggaacggcggcgatgacggcggcgcgtcgttcgtaaaagttagcgtggacggtgcgccttatttacggaaggtggatttgaagctatacgccagctacaaagaa
ctctctcacgcccttgcaaagatgtttagctccttcactattggaaagtgggaatcagaaggaatgaaggatttcatgaatgaaagaaaattggtagaccttttg
aatggttcagaatatgtacccacttatgaagacaaagatggagattggatgcttgttggagatgtgccatgggagatgtttgttgattcatgcaaacgtttgagg
atcatgaaagagtctgaagccattggattagcaccaagagcaatggagaagcaaaagaacagaagctga
mRNA sequenceShow/hide mRNA sequence
atgcccatggcccgatctttgggcttggctcattggatcatagtttgggtcgagctggagttgaatttgaatcagcatatcatcaaggaagaatttggagcggcg
aggaacggcggcgatgacggcggcgcgtcgttcgtaaaagttagcgtggacggtgcgccttatttacggaaggtggatttgaagctatacgccagctacaaagaa
ctctctcacgcccttgcaaagatgtttagctccttcactattggaaagtgggaatcagaaggaatgaaggatttcatgaatgaaagaaaattggtagaccttttg
aatggttcagaatatgtacccacttatgaagacaaagatggagattggatgcttgttggagatgtgccatgggagatgtttgttgattcatgcaaacgtttgagg
atcatgaaagagtctgaagccattggattagcaccaagagcaatggagaagcaaaagaacagaagctgagctggttttggttttgcctttataaaaatttgtttg
atatgcaccaattttcaatttttttcttcttttaattaatatatat
Protein sequenceShow/hide protein sequence
MPMARSLGLAHWIIVWVELELNLNQHIIKEEFGAARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGKWESEGMKDFMNERKLVDLL
NGSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKESEAIGLAPRAMEKQKNRS