CuGenDBv2

Gene ID	Clc00G02540
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic
Genome location	ClcCtg023:40910..41386
RNA-Seq Expression	Clc00G02540
Synteny	Clc00G02540
Gene Ontology terms	GO:0019684 - photosynthesis, light reaction (biological process) GO:0022900 - electron transport chain (biological process) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0005886 - plasma membrane (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function) GO:0048038 - quinone binding (molecular function)
InterPro domains	IPR001268 - NADH:ubiquinone oxidoreductase, 30kDa subunit IPR010218 - NADH dehydrogenase, subunit C IPR020396 - NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site IPR037232 - NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AHM88883.1 NADH-plastoquinone oxidoreductase subunit J [Lagenaria siceraria]

7.0e-91

98.73

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFA RINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERES+DMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

ALO21898.1 NdhJ [Cucurbita cordata]

4.1e-91

98.73

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERES+DMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYE+QDAH
Subjt:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

YP_009236283.1 NADH-plastoquinone oxidoreductase subunit J [Gynostemma pentaphyllum]

2.4e-91

99.37

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERES+DMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

YP_009325992.1 NADH dehydrogenase subunit J [Citrullus lanatus]

1.1e-91

100

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

YP_009751741.1 NADH dehydrogenase subunit J [Herpetospermum pedunculosum]

5.4e-91

98.73

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKP+EWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERES+DMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

TrEMBL top hits

e value

%identity

Alignment

A0A109WWM6 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

1.2e-91

99.37

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERES+DMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

A0A1P8LDR0 NADH-quinone oxidoreductase subunit C

5.2e-92

100

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

A0A1P8LDY6 NADH-quinone oxidoreductase subunit C

5.2e-92

100

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

A0A249RWZ3 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

5.2e-92

100

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

A0A343A8B3 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

5.2e-92

100

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

SwissProt top hits

e value

%identity

Alignment

B1A938 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

9.5e-91

94.94

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLS WLVKHGLVHRSLGFDYQGIETLQIKPE+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYG+DQPEEVCIKVFA R NPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADF ERES+DMLGISYDNHPRLKRILMPESW+GWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

B5LML3 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

5.2e-89

92.41

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQG+LS+WLVKHG+VHRSLGFDYQGIETLQIKPE+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEY +DQPEEVCIKVFA R NPRIPS+
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADF ERES+DMLGISYDNHPRLKRILMPESW+GWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

P31174 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

2.3e-89

91.77

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQG LSSWLVKHGL+HRSLGFDYQGIETLQIKPE+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTR+EYGIDQPEEVCIK+F AR NPRIPS+
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADF E+ES+DMLGISYDNHPRL+RILMPESW+GWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

Q0ZJ17 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

2.8e-90

94.3

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQG LS+WLVKHGLVHRSLGFDYQGIETLQIKPE+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYG+DQPEEVCIKVFA+R NPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADF ERES+DMLGISYDNHPRLKRILMPESW+GWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

Q4VZH2 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

1.0e-92

98.1

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQG+LSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERES+DMLGI YDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

Arabidopsis top hits

e value

%identity

Alignment

ATCG00420.1 NADH dehydrogenase subunit J

3.6e-85

88.61

Show/hide

Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQG LS WL K GLVHRSLGFDYQGIETLQIKPE+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYG++Q EEVCIKVF  R NPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKS DF ERES+DMLGI+YD+HPRLKRILMPESW+GWPLRKDYIAPNFYEIQDA+
Subjt:  FWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

ATMG00070.1 NADH dehydrogenase subunit 9

1.5e-06

32.29

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Query:  GIDQPE-----EVCIKVFAARIN------------PRIPSVFWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQ
        G+D P      EV   + + R N             RI  V  ++ SA   ERE +DM G+S+ NHP L+RI     + G PLRKD     + +++
Subjt:  GIDQPE-----EVCIKVFAARIN------------PRIPSVFWVWKSADFPERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQ

Sequences

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CDS sequence

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ATGCAGGGTCATTTGTCTTCTTGGCTAGTCAAACATGGACTGGTTCATAGATCTTTGGGTTTCGATTACCAAGGAATAGAGACTTTACAAATAAAGCCCGAGGAATGGCA
TTCCATTGCAGTCATTTTATATGTATATGGTTACAATTATCTACGTTCCCAATGTGCTTATGATGTAGCACCAGGCGGACTGTTAGCTAGTGTGTATCATCTTACGAGAA
TCGAGTATGGTATAGATCAACCGGAAGAGGTATGCATAAAAGTATTTGCCGCAAGGATAAATCCTAGAATTCCGTCTGTTTTCTGGGTTTGGAAAAGTGCGGATTTTCCA
GAAAGGGAATCTTTTGATATGTTGGGAATTTCTTATGATAATCATCCACGTCTAAAGCGTATCTTAATGCCTGAAAGTTGGGTAGGATGGCCTTTACGTAAGGATTATAT
TGCCCCCAATTTTTATGAAATACAAGATGCTCATTAA

mRNA sequence

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Protein sequence

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MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFP
ERESFDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

Clc00G02540 (gene) of Watermelon (cordophanus) v2 genome