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Clc00G02630 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc00G02630
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionATP-dependent Clp protease proteolytic subunit
Genome locationClcCtg023:61934..62342
RNA-Seq ExpressionClc00G02630
SyntenyClc00G02630
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0009767 - photosynthetic electron transport chain (biological process)
GO:0009521 - photosystem (cellular component)
GO:0009526 - plastid envelope (cellular component)
GO:0009570 - chloroplast stroma (cellular component)
GO:0004176 - ATP-dependent peptidase activity (molecular function)
GO:0004252 - serine-type endopeptidase activity (molecular function)
GO:0016168 - chlorophyll binding (molecular function)
InterPro domainsIPR001907 - ATP-dependent Clp protease proteolytic subunit
IPR023562 - Clp protease proteolytic subunit /Translocation-enhancing protein TepA
IPR029045 - ClpP/crotonase-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KJB59961.1 hypothetical protein B456_009G282800, partial [Gossypium raimondii]7.0e-3888.89Show/hide
Query:  KNEFHCGAVCTAQRMPVRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVA
        K EFHC AVC AQ+MPVRVMIHQPAS+FYEAQ GEF+LEAEELLKLRE++TRVYVQRTGKPLWVVSED+ERDVFMSATEAQAHGIVDLVA
Subjt:  KNEFHCGAVCTAQRMPVRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVA

PPD71117.1 hypothetical protein GOBAR_DD32000 [Gossypium barbadense]1.8e-3888.04Show/hide
Query:  KNEFHCGAVCTAQRMPVRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ
        K EFHC AVC AQ+MPVRVMIHQPAS+FYEAQ GEF+LEAEELLKLRE++TRVYVQRTGKPLWVVSED+ERDVFMSATEAQAHGIVDLVAV+
Subjt:  KNEFHCGAVCTAQRMPVRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ

RVW86494.1 ATP-dependent Clp protease proteolytic subunit [Vitis vinifera]8.2e-3988.17Show/hide
Query:  GKNEFHCGAVCTAQRMPVRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ
        GK++FHC AVC +Q+MPVRVMIHQPA+AFYEAQAGEFV+EAEELLKLRE IT+VYVQRTGKPLWVVSEDLERDVFMSATEAQ HGIVDLVAVQ
Subjt:  GKNEFHCGAVCTAQRMPVRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ

RZC52945.1 hypothetical protein C5167_021390 [Papaver somniferum]7.0e-3886.17Show/hide
Query:  MGKNEFHCGAVCTAQRMPVRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ
        +GK+ FH  AVC AQ+MPVRVMIHQPAS+FYEAQ GEFVLEAEELLKLRET+TRVYVQRTG PLWVVSED+ERDVFMSATEAQAHGIVDLVAV+
Subjt:  MGKNEFHCGAVCTAQRMPVRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ

RZC69716.1 hypothetical protein C5167_032847 [Papaver somniferum]9.1e-3885.11Show/hide
Query:  MGKNEFHCGAVCTAQRMPVRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ
        +GK+ FH  AVC AQ+MPVRVMIHQPAS+FYEAQ GEFVLEAEELLKLRET+TRVYVQRTG PLWVVSED+ERD+FMSATEAQAHGIVDLVAV+
Subjt:  MGKNEFHCGAVCTAQRMPVRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ

TrEMBL top hitse value%identityAlignment
A0A0D2TWL0 ATP-dependent Clp protease proteolytic subunit (Fragment)3.4e-3888.89Show/hide
Query:  KNEFHCGAVCTAQRMPVRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVA
        K EFHC AVC AQ+MPVRVMIHQPAS+FYEAQ GEF+LEAEELLKLRE++TRVYVQRTGKPLWVVSED+ERDVFMSATEAQAHGIVDLVA
Subjt:  KNEFHCGAVCTAQRMPVRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVA

A0A438HPW1 ATP-dependent Clp protease proteolytic subunit4.0e-3988.17Show/hide
Query:  GKNEFHCGAVCTAQRMPVRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ
        GK++FHC AVC +Q+MPVRVMIHQPA+AFYEAQAGEFV+EAEELLKLRE IT+VYVQRTGKPLWVVSEDLERDVFMSATEAQ HGIVDLVAVQ
Subjt:  GKNEFHCGAVCTAQRMPVRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ

A0A4Y7IZW1 ATP-dependent Clp protease proteolytic subunit3.4e-3886.17Show/hide
Query:  MGKNEFHCGAVCTAQRMPVRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ
        +GK+ FH  AVC AQ+MPVRVMIHQPAS+FYEAQ GEFVLEAEELLKLRET+TRVYVQRTG PLWVVSED+ERDVFMSATEAQAHGIVDLVAV+
Subjt:  MGKNEFHCGAVCTAQRMPVRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ

A0A4Y7KA84 ATP-dependent Clp protease proteolytic subunit4.4e-3885.11Show/hide
Query:  MGKNEFHCGAVCTAQRMPVRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ
        +GK+ FH  AVC AQ+MPVRVMIHQPAS+FYEAQ GEFVLEAEELLKLRET+TRVYVQRTG PLWVVSED+ERD+FMSATEAQAHGIVDLVAV+
Subjt:  MGKNEFHCGAVCTAQRMPVRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ

A0A5D2QMN8 ATP-dependent Clp protease proteolytic subunit9.8e-3886.96Show/hide
Query:  KNEFHCGAVCTAQRMPVRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ
        K EFHC AVC AQ+MPVRVMIHQPAS+FYEAQ GEF+LEAEELLKLRE++TRV VQRTGKPLWVVSED+ERDVFMSATEAQAHGIVDLVAV+
Subjt:  KNEFHCGAVCTAQRMPVRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ

SwissProt top hitse value%identityAlignment
A4QJE0 ATP-dependent Clp protease proteolytic subunit1.4e-3383.91Show/hide
Query:  GAVCTAQRMP-VRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ
        GA+      P  RVMIHQPAS+FYEAQ GEF+LEAEELLKLRETITRVYVQRTGKP+WVVSED+ERDVFMSATEAQAHGIVDLVAVQ
Subjt:  GAVCTAQRMP-VRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ

A4QJM4 ATP-dependent Clp protease proteolytic subunit1.4e-3383.91Show/hide
Query:  GAVCTAQRMP-VRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ
        GA+      P  RVMIHQPAS+FYEAQ GEF+LEAEELLKLRETITRVYVQRTGKP+WVVSED+ERDVFMSATEAQAHGIVDLVAVQ
Subjt:  GAVCTAQRMP-VRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ

A4QKD0 ATP-dependent Clp protease proteolytic subunit1.4e-3383.91Show/hide
Query:  GAVCTAQRMP-VRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ
        GA+      P  RVMIHQPAS+FYEAQ GEF+LEAEELLKLRETITRVYVQRTGKP+WVVSED+ERDVFMSATEAQAHGIVDLVAVQ
Subjt:  GAVCTAQRMP-VRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ

A4QKV6 ATP-dependent Clp protease proteolytic subunit1.4e-3383.91Show/hide
Query:  GAVCTAQRMP-VRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ
        GA+      P  RVMIHQPAS+FYEAQ GEF+LEAEELLKLRETITRVYVQRTGKP+WVVSED+ERDVFMSATEAQAHGIVDLVAVQ
Subjt:  GAVCTAQRMP-VRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ

A4QLD1 ATP-dependent Clp protease proteolytic subunit1.4e-3383.91Show/hide
Query:  GAVCTAQRMP-VRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ
        GA+      P  RVMIHQPAS+FYEAQ GEF+LEAEELLKLRETITRVYVQRTGKP+WVVSED+ERDVFMSATEAQAHGIVDLVAVQ
Subjt:  GAVCTAQRMP-VRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ

Arabidopsis top hitse value%identityAlignment
AT1G02560.1 nuclear encoded CLP protease 53.4e-0634.29Show/hide
Query:  RVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVD
        R+MIHQP       Q  +  ++A E+L  +  +       TG+ L  +++D +RD FMSA EA+ +G++D
Subjt:  RVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVD

AT1G11750.1 CLP protease proteolytic subunit 64.4e-0638.57Show/hide
Query:  RVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVD
        RVMIHQP +        +   +  E ++ R+ I R+Y   TG+PL  V +  ERD F+SA+EA   G++D
Subjt:  RVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVD

AT1G11750.2 CLP protease proteolytic subunit 64.4e-0638.57Show/hide
Query:  RVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVD
        RVMIHQP +        +   +  E ++ R+ I R+Y   TG+PL  V +  ERD F+SA+EA   G++D
Subjt:  RVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVD

AT5G23140.1 nuclear-encoded CLP protease P76.6e-1040.85Show/hide
Query:  VMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLV
        VMIHQP S  Y  QA +  +  ++++++ + +  +YV+ TG+PL VV+ +++RD FM+  EA+A GI+D V
Subjt:  VMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLV

ATCG00670.1 plastid-encoded CLP P1.3e-3482.76Show/hide
Query:  GAVCTAQRMP-VRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ
        GA+      P  RVMIHQPAS+FYEAQ GEF+LEAEELLKLRETITRVYVQRTGKP+WV+SED+ERDVFMSATEAQAHGIVDLVAVQ
Subjt:  GAVCTAQRMP-VRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAAAAATGAATTCCATTGTGGAGCCGTATGCACTGCACAAAGGATGCCTGTACGGGTAATGATCCATCAACCTGCTAGTGCTTTTTATGAGGCACAAGCAGGAGA
ATTTGTCCTGGAAGCGGAAGAACTACTGAAGCTGCGCGAAACCATCACAAGGGTTTATGTACAAAGAACAGGCAAACCCTTATGGGTTGTATCCGAAGACCTGGAAAGGG
ATGTTTTTATGTCAGCAACAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAGCGGTTCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAAAAATGAATTCCATTGTGGAGCCGTATGCACTGCACAAAGGATGCCTGTACGGGTAATGATCCATCAACCTGCTAGTGCTTTTTATGAGGCACAAGCAGGAGA
ATTTGTCCTGGAAGCGGAAGAACTACTGAAGCTGCGCGAAACCATCACAAGGGTTTATGTACAAAGAACAGGCAAACCCTTATGGGTTGTATCCGAAGACCTGGAAAGGG
ATGTTTTTATGTCAGCAACAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAGCGGTTCAATAA
Protein sequenceShow/hide protein sequence
MGKNEFHCGAVCTAQRMPVRVMIHQPASAFYEAQAGEFVLEAEELLKLRETITRVYVQRTGKPLWVVSEDLERDVFMSATEAQAHGIVDLVAVQ