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Clc00G02635 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc00G02635
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionATP-dependent Clp protease proteolytic subunit
Genome locationClcCtg023:62756..63215
RNA-Seq ExpressionClc00G02635
SyntenyClc00G02635
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0009526 - plastid envelope (cellular component)
GO:0009570 - chloroplast stroma (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0004176 - ATP-dependent peptidase activity (molecular function)
GO:0004252 - serine-type endopeptidase activity (molecular function)
InterPro domainsIPR001907 - ATP-dependent Clp protease proteolytic subunit
IPR018215 - ClpP, Ser active site
IPR023562 - Clp protease proteolytic subunit /Translocation-enhancing protein TepA
IPR029045 - ClpP/crotonase-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QTX96635.1 ClpP [Agrimonia pilosa var. nepalensis]9.8e-5085.22Show/hide
Query:  EGARTVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSG
        +GA TV KGY+FI INRLYRERLLFLGQ +D+E+SNQLIGLMVYLS+ED+TKDLYLFINSPGGWV+PG+AIYDTMQFVRPD+QT+CMGLAASMGSFIL G
Subjt:  EGARTVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSG

Query:  GKITKRLAFPHARRQ
        G+ITKRLAFPHARRQ
Subjt:  GKITKRLAFPHARRQ

RXV70727.1 ATP-dependent Clp protease proteolytic subunit [bacterium 1XD8-92]9.8e-5086.84Show/hide
Query:  EGARTVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSG
        +GA TVLK YNFILINRLYRERLLFLGQE+D+E+SNQLIGLMVYLS+ED+TKDLYLFINSPGGWV+PG+AIYDTMQFVRPDVQT+CMGL ASMGSFIL G
Subjt:  EGARTVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSG

Query:  GKITKRLAFPHARR
        G+ITKRLAFPHA R
Subjt:  GKITKRLAFPHARR

WP_078101523.1 ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus]3.4e-5084.35Show/hide
Query:  EGARTVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSG
        +GA T  KGYNFILINRLYRERLLFLGQE+D+E+SNQLIGLMVYLS+E++TKDLYLFINSPGGWV+PG+AIYDTMQFV+PDV T+CMGLAASMGSF+L+G
Subjt:  EGARTVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSG

Query:  GKITKRLAFPHARRQ
        G+ITKRLAFPHARRQ
Subjt:  GKITKRLAFPHARRQ

YP_009387584.1 clp protease proteolytic subunit [Hansenia weberbaueriana]2.6e-5086.09Show/hide
Query:  EGARTVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSG
        +GA TV KGYNF LINRLYRERLLFLGQE+D+E+SNQLIGLMVYLS+E++TKDLYLFINSPGGWV+PG+AIYDTMQFVRPDVQT+CMGLAASMGSFIL+G
Subjt:  EGARTVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSG

Query:  GKITKRLAFPHARRQ
        G+ITKRLAFPHA RQ
Subjt:  GKITKRLAFPHARRQ

YP_010016723.1 clp protease proteolytic subunit [Osmanthus cooperi]5.8e-5086.09Show/hide
Query:  EGARTVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSG
        +GA TV KGYNF LINRLYRERLLFLGQE+D+ELSNQLIGLMVYLS+ED+TKDLYLFINSPGGWV+PG+A+YDTMQFVRPDV T+CMGLAASMGSFIL G
Subjt:  EGARTVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSG

Query:  GKITKRLAFPHARRQ
        G+ITKRLAFPHA RQ
Subjt:  GKITKRLAFPHARRQ

TrEMBL top hitse value%identityAlignment
A0A1B2FKN8 ATP-dependent Clp protease proteolytic subunit4.7e-5085.22Show/hide
Query:  EGARTVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSG
        +GA TV KGY+FI INRLYRERLLFLGQ +D+E+SNQLIGLMVYLS+ED+TKDLYLFINSPGGWV+PG+AIYDTMQFVRPD+QT+CMGLAASMGSFIL G
Subjt:  EGARTVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSG

Query:  GKITKRLAFPHARRQ
        G+ITKRLAFPHARRQ
Subjt:  GKITKRLAFPHARRQ

A0A1Y0B4Y8 ATP-dependent Clp protease proteolytic subunit1.2e-5086.09Show/hide
Query:  EGARTVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSG
        +GA TV KGYNF LINRLYRERLLFLGQE+D+E+SNQLIGLMVYLS+E++TKDLYLFINSPGGWV+PG+AIYDTMQFVRPDVQT+CMGLAASMGSFIL+G
Subjt:  EGARTVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSG

Query:  GKITKRLAFPHARRQ
        G+ITKRLAFPHA RQ
Subjt:  GKITKRLAFPHARRQ

A0A1Y0B5P7 ATP-dependent Clp protease proteolytic subunit1.2e-5086.09Show/hide
Query:  EGARTVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSG
        +GA TV KGYNF LINRLYRERLLFLGQE+D+E+SNQLIGLMVYLS+E++TKDLYLFINSPGGWV+PG+AIYDTMQFVRPDVQT+CMGLAASMGSFIL+G
Subjt:  EGARTVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSG

Query:  GKITKRLAFPHARRQ
        G+ITKRLAFPHA RQ
Subjt:  GKITKRLAFPHARRQ

A0A5R9QK32 ATP-dependent Clp protease proteolytic subunit4.7e-5084.48Show/hide
Query:  MEGARTVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILS
        ++GA TV KGYN  LINRLYRERLLFLGQE+D+E+SNQLIGLMVYLS+E++TKDLYLFINSPGGWV+PG+AIYDTMQFVRPDVQT+CMGLAASMGSFIL+
Subjt:  MEGARTVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILS

Query:  GGKITKRLAFPHARRQ
        GG+ITKRLAFPHA RQ
Subjt:  GGKITKRLAFPHARRQ

A0A7M3US92 ATP-dependent Clp protease proteolytic subunit2.8e-5086.09Show/hide
Query:  EGARTVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSG
        +GA TV KGYNF LINRLYRERLLFLGQE+D+ELSNQLIGLMVYLS+ED+TKDLYLFINSPGGWV+PG+A+YDTMQFVRPDV T+CMGLAASMGSFIL G
Subjt:  EGARTVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSG

Query:  GKITKRLAFPHARRQ
        G+ITKRLAFPHA RQ
Subjt:  GKITKRLAFPHARRQ

SwissProt top hitse value%identityAlignment
P12210 ATP-dependent Clp protease proteolytic subunit8.1e-4789.8Show/hide
Query:  NRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSGGKITKRLAFPHAR
        NRLYRERLLFLGQE+D+E+SNQLIGLMVYLS+EDETKDLYLFINSPGGWV+PG+AIYDTMQFVRPDV T+CMGLAASMGSFIL GG+ITKRLAFPHAR
Subjt:  NRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSGGKITKRLAFPHAR

Q0G9T7 ATP-dependent Clp protease proteolytic subunit8.1e-4788.78Show/hide
Query:  NRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSGGKITKRLAFPHAR
        NRLYRERLLFLGQE+D+E+SNQLIGLMVYLS+E++TKDLYLFINSPGGWV+PG+AIYDTMQFVRPDVQT+CMGLAASMGSFIL+GG+ITKRLAFPHAR
Subjt:  NRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSGGKITKRLAFPHAR

Q33C07 ATP-dependent Clp protease proteolytic subunit8.1e-4789.8Show/hide
Query:  NRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSGGKITKRLAFPHAR
        NRLYRERLLFLGQE+D+E+SNQLIGLMVYLS+EDETKDLYLFINSPGGWV+PG+AIYDTMQFVRPDV T+CMGLAASMGSFIL GG+ITKRLAFPHAR
Subjt:  NRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSGGKITKRLAFPHAR

Q3C1K4 ATP-dependent Clp protease proteolytic subunit8.1e-4789.8Show/hide
Query:  NRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSGGKITKRLAFPHAR
        NRLYRERLLFLGQE+D+E+SNQLIGLMVYLS+EDETKDLYLFINSPGGWV+PG+AIYDTMQFVRPDV T+CMGLAASMGSFIL GG+ITKRLAFPHAR
Subjt:  NRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSGGKITKRLAFPHAR

Q9M3K5 ATP-dependent Clp protease proteolytic subunit1.8e-4688.78Show/hide
Query:  NRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSGGKITKRLAFPHAR
        NRLYRERLLFLGQE+D+E+SNQLIGLMVYLS+ED+TKDLYLFINSPGGWV+PG+AIYDTMQFVRPDV T+CMGLAASMGSFIL GG+ITKRLAFPHAR
Subjt:  NRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSGGKITKRLAFPHAR

Arabidopsis top hitse value%identityAlignment
AT1G02560.1 nuclear encoded CLP protease 52.9e-2346Show/hide
Query:  LINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSGGKITKRLAFPHAR
        +I++L++ R++  G  +D +++N ++  ++YL   D TKD+ +++NSPGG V  G+AI+DTM+ +RPDV TVC+GLAASMG+F+LS G   KR + P++R
Subjt:  LINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSGGKITKRLAFPHAR

AT1G12410.1 CLP protease proteolytic subunit 21.6e-2144.9Show/hide
Query:  NRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSGGKITKRLAFPHAR
        N LYRER++F+GQ ID E SNQ++  M+YL   D+++ +Y+++N PGG + P +AIYDTM+ ++  V T C+GLA ++  F+L+ G+   R A P +R
Subjt:  NRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSGGKITKRLAFPHAR

AT1G66670.1 CLP protease proteolytic subunit 31.3e-2044.9Show/hide
Query:  NRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSGGKITKRLAFPHAR
        N L R+R++FLG ++D   ++ +I  ++ L  ED  +D+ LFINSPGG +  G+ IYD M+  + DV TVC+GLAASMG+F+L+ G   KR   P+++
Subjt:  NRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSGGKITKRLAFPHAR

AT5G45390.1 CLP protease P41.2e-1841.28Show/hide
Query:  TVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSGGKIT
        + ++G    ++  L RER++FLG  ID  +++ ++  ++ L  +D  KD+ LFINSPGG +   +AIYD +Q VR DV T+ +G+AAS  S IL  G   
Subjt:  TVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSGGKIT

Query:  KRLAFPHAR
        KR A P+ R
Subjt:  KRLAFPHAR

ATCG00670.1 plastid-encoded CLP P8.6e-4481Show/hide
Query:  LINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSGGKITKRLAFPHAR
        + NRLYRERL FLGQE+DTE+SNQLI LM+YLS+E +TKDLYLFINSPGGWV+ G+AIYDTMQFVRPDVQT+CMGLAAS+ SFIL GG ITKR+AFPHAR
Subjt:  LINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSGGKITKRLAFPHAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGTGCCCGTACGGTTCTTAAGGGATACAATTTTATCCTAATCAACCGACTTTATCGAGAAAGATTACTTTTTTTAGGCCAAGAGATTGATACCGAGCTCTCGAA
TCAACTTATTGGTCTTATGGTATATCTCAGTATGGAGGATGAGACCAAAGATCTGTATTTATTTATAAACTCTCCCGGTGGATGGGTACTACCCGGAATAGCTATTTATG
ATACTATGCAATTTGTGCGACCAGATGTACAGACAGTATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATTCTGTCCGGAGGAAAAATTACCAAACGTCTAGCATTC
CCTCACGCTCGGCGCCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGTGCCCGTACGGTTCTTAAGGGATACAATTTTATCCTAATCAACCGACTTTATCGAGAAAGATTACTTTTTTTAGGCCAAGAGATTGATACCGAGCTCTCGAA
TCAACTTATTGGTCTTATGGTATATCTCAGTATGGAGGATGAGACCAAAGATCTGTATTTATTTATAAACTCTCCCGGTGGATGGGTACTACCCGGAATAGCTATTTATG
ATACTATGCAATTTGTGCGACCAGATGTACAGACAGTATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATTCTGTCCGGAGGAAAAATTACCAAACGTCTAGCATTC
CCTCACGCTCGGCGCCAATGA
Protein sequenceShow/hide protein sequence
MEGARTVLKGYNFILINRLYRERLLFLGQEIDTELSNQLIGLMVYLSMEDETKDLYLFINSPGGWVLPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILSGGKITKRLAF
PHARRQ