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Clc00G02765 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc00G02765
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionarabinogalactan peptide 23-like
Genome locationClcCtg016:44882..45067
RNA-Seq ExpressionClc00G02765
SyntenyClc00G02765
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018086.1 hypothetical protein SDJN02_19952, partial [Cucurbita argyrosperma subsp. argyrosperma]3.1e-1896.61Show/hide
Query:  MKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
        MKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAA+GLPAIGS+IGASLLSVAAYYLQ
Subjt:  MKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
KAG7019275.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]8.9e-1890.16Show/hide
Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
        MEMKKI CA+LFAAATVSAVVAHDEA APAPGP+SGA +GLPAIGSLIGASLLSVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
XP_022983304.1 arabinogalactan peptide 23-like [Cucurbita maxima]3.6e-1996.72Show/hide
Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
        MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAA+GLPAIGS IGASLLSVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
XP_022998512.1 arabinogalactan peptide 23-like [Cucurbita maxima]7.5e-1788.52Show/hide
Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
        MEM KI CA+LFAAATVSAVVAHDEA APAPGP+SGA  GLPAIGSLIGASLLSVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
XP_038905644.1 arabinogalactan protein 23-like [Benincasa hispida]1.4e-1895.08Show/hide
Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
        MEMKKIACAVLFAAATVSA VAHDEALAPAPGPSSGAA GLPAIGS+IGASLLSVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
TrEMBL top hitse value%identityAlignment
A0A0A0L9U8 Uncharacterized protein5.3e-1688.33Show/hide
Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYL
        MEMKKIACAVLFAAATV+AVVA DEALAPAPGPSSGA  G+PAIGSL+GASLLS AAYYL
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYL
A0A5A7U280 Arabinogalactan peptide 232.4e-1688.33Show/hide
Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYL
        MEMKKIACA+LFAAATVSA VA D+ALAPAPGPSSGAA GLPAIGSL+GASLLS AAYYL
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYL
A0A6J1HQG2 arabinogalactan peptide 23-like9.9e-1583.61Show/hide
Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
        MEMKKI CAVLFAAATV+A VA +EA APAPGP+S A  GLPAIGSLIGASLLSVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
A0A6J1J6Y9 arabinogalactan peptide 23-like1.7e-1996.72Show/hide
Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
        MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAA+GLPAIGS IGASLLSVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
A0A6J1K873 arabinogalactan peptide 23-like3.6e-1788.52Show/hide
Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
        MEM KI CA+LFAAATVSAVVAHDEA APAPGP+SGA  GLPAIGSLIGASLLSVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 238.9e-1366.67Show/hide
Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYL
        MEMKKIAC VLFAAA+++AV+A +E  APAPGP+S A++ LPA+GSL+GASL+S+ +YYL
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYL
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)6.6e-1165.57Show/hide
Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGP-SSGAASGLPAIGSLIGASLLSVAAYYL
        MEMKKIAC V+FAAA+++AV+A  E  APAPGP +SGA+  +PA+GSL+GASL+S+ AYYL
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGP-SSGAASGLPAIGSLIGASLLSVAAYYL
AT3G57690.1 arabinogalactan protein 236.3e-1466.67Show/hide
Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYL
        MEMKKIAC VLFAAA+++AV+A +E  APAPGP+S A++ LPA+GSL+GASL+S+ +YYL
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
atggagatgaagaagatcgcctgcgccgtcctcttcgctgccgcaaccgtcagcgccgtcgtggctcacgatgaggcgttggctccagcacctggaccaagcagcggcgc
cgccagtggtctcccggcaattggctctctcatcggcgcctcgttgctctccgtcgccgcctactacttgcaatga
mRNA sequenceShow/hide mRNA sequence
atggagatgaagaagatcgcctgcgccgtcctcttcgctgccgcaaccgtcagcgccgtcgtggctcacgatgaggcgttggctccagcacctggaccaagcagcggcgc
cgccagtggtctcccggcaattggctctctcatcggcgcctcgttgctctccgtcgccgcctactacttgcaatga
Protein sequenceShow/hide protein sequence
MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ