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Clc01G00100 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G00100
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description60S acidic ribosomal protein P1
Genome locationClcChr01:72592..73140
RNA-Seq ExpressionClc01G00100
SyntenyClc01G00100
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR038716 - Ribosomal protein P1/P2, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006394706.1 60S acidic ribosomal protein P1 [Eutrema salsugineum]3.8e-1246.79Show/hide
Query:  AMSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNAAPAPVD-----------------KQEEVME
        A +TSELACTYAALILH D I + AEKISK V AA++ VESYWPSLF+            +++ +S G AAP   +                 K+E+V E
Subjt:  AMSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNAAPAPVD-----------------KQEEVME

Query:  ESEDEMVLG
        ESED+MV G
Subjt:  ESEDEMVLG

XP_009111636.1 60S acidic ribosomal protein P1 isoform X2 [Brassica rapa]1.4e-1146.23Show/hide
Query:  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNAAPAPVD----------------KQEEVMEESE
        +TSELACTYAALILH D I + AEKI+K V AA++ VESYWPSLF+            +++ +S   AAP  ++                K+EEV EESE
Subjt:  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNAAPAPVD----------------KQEEVMEESE

Query:  DEMVLG
        D+MV G
Subjt:  DEMVLG

XP_013659163.1 60S acidic ribosomal protein P1 isoform X2 [Brassica napus]3.2e-1146.23Show/hide
Query:  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNAAPAPVD----------------KQEEVMEESE
        +TSELACTYAALILH D I + AEKI+K V AA++ VESYWPSLF+            +++ +S   AAP   +                K+EEV EESE
Subjt:  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNAAPAPVD----------------KQEEVMEESE

Query:  DEMVLG
        D+MV G
Subjt:  DEMVLG

XP_022138163.1 60S acidic ribosomal protein P1-like isoform X1 [Momordica charantia]1.5e-1351.43Show/hide
Query:  ELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNA------------------APAPVDKQEEVMEESED
        ELACTYAALILH DAISV AEKI+  V AA LTVESYWPSLF+            L++ S+A +A                  APAPV+K+EE +EESED
Subjt:  ELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNA------------------APAPVDKQEEVMEESED

Query:  EMVLG
        ++V G
Subjt:  EMVLG

XP_022138164.1 60S acidic ribosomal protein P1-like isoform X2 [Momordica charantia]1.6e-1553.21Show/hide
Query:  MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNA------------------APAPVDKQEEVME
        MSTSELACTYAALILH DAISV AEKI+  V AA LTVESYWPSLF+            L++ S+A +A                  APAPV+K+EE +E
Subjt:  MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNA------------------APAPVDKQEEVME

Query:  ESEDEMVLG
        ESED++V G
Subjt:  ESEDEMVLG

TrEMBL top hitse value%identityAlignment
A0A397XR95 Uncharacterized protein1.5e-1146.23Show/hide
Query:  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNAAPAPVD----------------KQEEVMEESE
        +TSELACTYAALILH D I + AEKI+K V AA++ VESYWPSLF+            +++ +S   AAP   +                K+EEV EESE
Subjt:  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNAAPAPVD----------------KQEEVMEESE

Query:  DEMVLG
        D+MV G
Subjt:  DEMVLG

A0A6J1C9A3 60S acidic ribosomal protein P1-like isoform X27.9e-1653.21Show/hide
Query:  MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNA------------------APAPVDKQEEVME
        MSTSELACTYAALILH DAISV AEKI+  V AA LTVESYWPSLF+            L++ S+A +A                  APAPV+K+EE +E
Subjt:  MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNA------------------APAPVDKQEEVME

Query:  ESEDEMVLG
        ESED++V G
Subjt:  ESEDEMVLG

A0A6J1CC92 60S acidic ribosomal protein P1-like isoform X17.4e-1451.43Show/hide
Query:  ELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNA------------------APAPVDKQEEVMEESED
        ELACTYAALILH DAISV AEKI+  V AA LTVESYWPSLF+            L++ S+A +A                  APAPV+K+EE +EESED
Subjt:  ELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNA------------------APAPVDKQEEVMEESED

Query:  EMVLG
        ++V G
Subjt:  EMVLG

M4F610 Uncharacterized protein6.9e-1246.23Show/hide
Query:  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNAAPAPVD----------------KQEEVMEESE
        +TSELACTYAALILH D I + AEKI+K V AA++ VESYWPSLF+            +++ +S   AAP  ++                K+EEV EESE
Subjt:  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNAAPAPVD----------------KQEEVMEESE

Query:  DEMVLG
        D+MV G
Subjt:  DEMVLG

V4KQ04 Uncharacterized protein1.8e-1246.79Show/hide
Query:  AMSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNAAPAPVD-----------------KQEEVME
        A +TSELACTYAALILH D I + AEKISK V AA++ VESYWPSLF+            +++ +S G AAP   +                 K+E+V E
Subjt:  AMSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNAAPAPVD-----------------KQEEVME

Query:  ESEDEMVLG
        ESED+MV G
Subjt:  ESEDEMVLG

SwissProt top hitse value%identityAlignment
P18660 60S acidic ribosomal protein P17.7e-0835.64Show/hide
Query:  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFSLSISS----------------------------SAGNAAPAPVDKQEEVMEESE
        S SELAC Y+ALILH D ++V  +KI+  + AA + VE +WP LF+ ++++                            + G AAPA   K+EE  EESE
Subjt:  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFSLSISS----------------------------SAGNAAPAPVDKQEEVMEESE

Query:  D
        +
Subjt:  D

P27464 60S acidic ribosomal protein P18.2e-1047.83Show/hide
Query:  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFSLSISS---------SAGNAAPAPV---------DKQEEVMEESEDE
        STSELAC Y+ALILH DAI+  AEK++K ++AA++ VE YWP LF+L   +         S+G AA AP          +K+EE   ESEDE
Subjt:  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFSLSISS---------SAGNAAPAPV---------DKQEEVMEESEDE

P29763 60S acidic ribosomal protein P12.0e-0840.4Show/hide
Query:  MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS-----------LSISSSAGNAAPA-------------PVDKQEEVMEESEDE
        MSTSELACTYAALILH D + + A+ I+    AA + VE YWP+LF+           ++   + G AAPA                K+EE  E SE+E
Subjt:  MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS-----------LSISSSAGNAAPA-------------PVDKQEEVMEESEDE

P47955 60S acidic ribosomal protein P11.0e-0734.86Show/hide
Query:  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFSLSI----------------------SSSAGNAAPA---------PVDKQEEVME
        S SELAC Y+ALILH D ++V  +KI+  + AA ++VE +WP LF+ ++                      ++ AG AAP+          V+ ++E  E
Subjt:  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFSLSI----------------------SSSAGNAAPA---------PVDKQEEVME

Query:  ESEDEMVLG
        ESED+M  G
Subjt:  ESEDEMVLG

P52855 60S acidic ribosomal protein P11.6e-1042.72Show/hide
Query:  MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAG---------------NAAPAPVDKQEEVMEESE
        M++ ELAC YAALIL  D I++ AEKI+  V AA++ VESYWP+LF+            LS+ S  G                AAPA  +K+EE  EES+
Subjt:  MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAG---------------NAAPAPVDKQEEVMEESE

Query:  DEM
        D+M
Subjt:  DEM

Arabidopsis top hitse value%identityAlignment
AT1G01100.3 60S acidic ribosomal protein family2.4e-0938.71Show/hide
Query:  MST-SELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNAAPAPVD-KQEEVMEESEDEMVLG
        MST  ELAC+YA +IL  + I++ A+KI+  V AA +++ESYWP LF+            +++ +  G AAPA  + K++E  EES+ ++  G
Subjt:  MST-SELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISSSAGNAAPAPVD-KQEEVMEESEDEMVLG

AT4G00810.1 60S acidic ribosomal protein family8.7e-0733.64Show/hide
Query:  MST-SELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLF---------------------------SLSISSSAGN---AAPAPVDKQEEVM
        MST  ELAC+YA +IL  + I++ ++KI+  V AA + +ESYWP LF                           S +  ++AG    AAPA  +K++E  
Subjt:  MST-SELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLF---------------------------SLSISSSAGN---AAPAPVDKQEEVM

Query:  EESEDEMVLG
        EES+ ++  G
Subjt:  EESEDEMVLG

AT5G24510.1 60S acidic ribosomal protein family2.1e-1346.3Show/hide
Query:  MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS----------LSISSSAG---------NAAPA-------PVDKQEE---VMEE
        MSTSELACTYAALILH D I + AE ISK V  A++ VESYWPSLF+          L ++  AG          AAP        P +K+ E   + EE
Subjt:  MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS----------LSISSSAG---------NAAPA-------PVDKQEE---VMEE

Query:  SEDEMVLG
        SED+M++G
Subjt:  SEDEMVLG

AT5G47700.1 60S acidic ribosomal protein family1.7e-0743.84Show/hide
Query:  MST-SELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS----------LSISSSAGNAAPAPV
        MST  ELAC+YA +IL  + I++ A+KI+  V AA +T+ESYWP LF+          L ++  AG    APV
Subjt:  MST-SELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS----------LSISSSAGNAAPAPV

AT5G47700.2 60S acidic ribosomal protein family1.7e-0743.84Show/hide
Query:  MST-SELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS----------LSISSSAGNAAPAPV
        MST  ELAC+YA +IL  + I++ A+KI+  V AA +T+ESYWP LF+          L ++  AG    APV
Subjt:  MST-SELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS----------LSISSSAGNAAPAPV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCATTCTTTCTGCTCTGCTGCTCTGCAATGTCTACCAGTGAACTTGCTTGCACCTACGCCGCCTTGATTCTTCATGGCGACGCCATCTCCGTCGCTGCCGAGAA
GATTTCCAAGTCGGTGAACGCTGCCAGCCTTACCGTCGAATCCTACTGGCCTTCTCTCTTTTCTCTCTCCATCTCATCTTCTGCCGGTAATGCCGCTCCTGCGCCCGTCG
ACAAGCAGGAAGAGGTGATGGAAGAGAGCGAGGATGAGATGGTCTTGGGCTTTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTCATTCTTTCTGCTCTGCTGCTCTGCAATGTCTACCAGTGAACTTGCTTGCACCTACGCCGCCTTGATTCTTCATGGCGACGCCATCTCCGTCGCTGCCGAGAA
GATTTCCAAGTCGGTGAACGCTGCCAGCCTTACCGTCGAATCCTACTGGCCTTCTCTCTTTTCTCTCTCCATCTCATCTTCTGCCGGTAATGCCGCTCCTGCGCCCGTCG
ACAAGCAGGAAGAGGTGATGGAAGAGAGCGAGGATGAGATGGTCTTGGGCTTTGTTTGA
Protein sequenceShow/hide protein sequence
MFSFFLLCCSAMSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFSLSISSSAGNAAPAPVDKQEEVMEESEDEMVLGFV