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Clc01G00550 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G00550
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionSuccinate dehydrogenase assembly factor 4, mitochondrial
Genome locationClcChr01:376926..377558
RNA-Seq ExpressionClc01G00550
SyntenyClc01G00550
Gene Ontology termsGO:0034553 - mitochondrial respiratory chain complex II assembly (biological process)
GO:0005739 - mitochondrion (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042555.1 succinate dehydrogenase assembly factor 4 [Cucumis melo var. makuwa]1.4e-1986.11Show/hide
Query:  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGSLPNQHEAAIDER
        MSS+LSRLFSSPPTLSALP   RLT+NSLSR VSSSSNQQPSRSEQGVSSEEQREA KGS PNQHEAA D+R
Subjt:  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGSLPNQHEAAIDER

KGN49871.1 hypothetical protein Csa_000062 [Cucumis sativus]4.8e-2087.5Show/hide
Query:  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGSLPNQHEAAIDER
        MSSNLSRLFSSPPTLSALPA SRLT NSLSR VSSSSNQQPSR E+GVSSEEQREAGKGS PN+HEAA D+R
Subjt:  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGSLPNQHEAAIDER

XP_022957978.1 succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita moschata]3.6e-1574.32Show/hide
Query:  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGSLPNQHEAAIDERDA
        MSSNL+RLF SPP+L+AL A +R T+ S+SRLVSSS+NQQPSR EQGV  EEQREAGKGSLP+QHEAA D+RD+
Subjt:  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGSLPNQHEAAIDERDA

XP_022995844.1 succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita maxima]9.4e-1674.32Show/hide
Query:  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGSLPNQHEAAIDERDA
        MSSNL+RLF SPP+L+AL A +R+T+ S+SRLVSSS+NQQPSR EQGV  EEQREAGKGSLP+QHEAA D+RD+
Subjt:  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGSLPNQHEAAIDERDA

XP_023532848.1 succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita pepo subsp. pepo]8.0e-1572.97Show/hide
Query:  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGSLPNQHEAAIDERDA
        MSSNL+RLF SPP+L++L A +R T+ S+SRLVSSS+NQQPSR EQGV  EEQREAGKGSLP+QHEAA D+RD+
Subjt:  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGSLPNQHEAAIDERDA

TrEMBL top hitse value%identityAlignment
A0A0A0KQ66 Succinate dehydrogenase assembly factor 4, mitochondrial2.3e-2087.5Show/hide
Query:  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGSLPNQHEAAIDER
        MSSNLSRLFSSPPTLSALPA SRLT NSLSR VSSSSNQQPSR E+GVSSEEQREAGKGS PN+HEAA D+R
Subjt:  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGSLPNQHEAAIDER

A0A5A7TMD3 Succinate dehydrogenase assembly factor 4, mitochondrial6.8e-2086.11Show/hide
Query:  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGSLPNQHEAAIDER
        MSS+LSRLFSSPPTLSALP   RLT+NSLSR VSSSSNQQPSRSEQGVSSEEQREA KGS PNQHEAA D+R
Subjt:  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGSLPNQHEAAIDER

A0A6J1H1T7 Succinate dehydrogenase assembly factor 4, mitochondrial1.7e-1574.32Show/hide
Query:  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGSLPNQHEAAIDERDA
        MSSNL+RLF SPP+L+AL A +R T+ S+SRLVSSS+NQQPSR EQGV  EEQREAGKGSLP+QHEAA D+RD+
Subjt:  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGSLPNQHEAAIDERDA

A0A6J1K722 Succinate dehydrogenase assembly factor 4, mitochondrial4.6e-1674.32Show/hide
Query:  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGSLPNQHEAAIDERDA
        MSSNL+RLF SPP+L+AL A +R+T+ S+SRLVSSS+NQQPSR EQGV  EEQREAGKGSLP+QHEAA D+RD+
Subjt:  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGSLPNQHEAAIDERDA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGCAATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTCTCCGCGCTACCGGCGGCGAGTCGCCTGACTGCCAACTCGTTGAGCCGGCTCGTTAGCTCCTCGTC
CAATCAACAACCTTCTCGATCGGAGCAAGGTGTGTCTAGCGAGGAACAACGAGAGGCCGGGAAAGGAAGTTTGCCGAATCAACACGAGGCTGCCATAGATGAACGAGACG
CCCACCCGCTACGGCGATTGGGAACGAAACGGTCGGTGCTACGATTTCTGACATTTCGAGGAATAAGGGATCCATGGATAAAGGCGCTAAATGGTGATTCAACATGGATT
CGACATCTTGGAACCAAGCCAATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGAGCAATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTCTCCGCGCTACCGGCGGCGAGTCGCCTGACTGCCAACTCGTTGAGCCGGCTCGTTAGCTCCTCGTC
CAATCAACAACCTTCTCGATCGGAGCAAGGTGTGTCTAGCGAGGAACAACGAGAGGCCGGGAAAGGAAGTTTGCCGAATCAACACGAGGCTGCCATAGATGAACGAGACG
CCCACCCGCTACGGCGATTGGGAACGAAACGGTCGGTGCTACGATTTCTGACATTTCGAGGAATAAGGGATCCATGGATAAAGGCGCTAAATGGTGATTCAACATGGATT
CGACATCTTGGAACCAAGCCAATTTAG
Protein sequenceShow/hide protein sequence
MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGSLPNQHEAAIDERDAHPLRRLGTKRSVLRFLTFRGIRDPWIKALNGDSTWI
RHLGTKPI