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Clc01G00670 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G00670
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptiontranscription factor TRY
Genome locationClcChr01:468887..470504
RNA-Seq ExpressionClc01G00670
SyntenyClc01G00670
Gene Ontology termsGO:0030154 - cell differentiation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016898876.1 PREDICTED: transcription factor TRY [Cucumis melo]2.3e-3997.56Show/hide
Query:  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG
        MDNHRHQKQAKI+PL+SEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG
Subjt:  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG

XP_022973073.1 transcription factor TRY-like [Cucurbita maxima]3.6e-3793.9Show/hide
Query:  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG
        M+NHR QK AK+ PLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG
Subjt:  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG

XP_022996343.1 transcription factor TRY-like [Cucurbita maxima]8.0e-3793.9Show/hide
Query:  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG
        MDNHR+Q+QAK TPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGF  RRRG
Subjt:  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG

XP_031742154.1 transcription factor TRY [Cucumis sativus]5.0e-3997.56Show/hide
Query:  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG
        MDNHRHQK AKI+PLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG
Subjt:  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG

XP_038875738.1 transcription factor TRY [Benincasa hispida]5.0e-3998.78Show/hide
Query:  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG
        MDNHRHQKQAKIT LESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG
Subjt:  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG

TrEMBL top hitse value%identityAlignment
A0A1S4DSB1 transcription factor TRY1.1e-3997.56Show/hide
Query:  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG
        MDNHRHQKQAKI+PL+SEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG
Subjt:  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG

A0A5D3C2B2 Transcription factor TRY1.1e-3997.56Show/hide
Query:  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG
        MDNHRHQKQAKI+PL+SEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG
Subjt:  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG

A0A6J1IC17 transcription factor TRY-like1.7e-3793.9Show/hide
Query:  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG
        M+NHR QK AK+ PLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG
Subjt:  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG

A0A6J1KAI4 transcription factor TRY-like3.9e-3793.9Show/hide
Query:  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG
        MDNHR+Q+QAK TPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGF  RRRG
Subjt:  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG

I6NF75 R3 MYB transcription factor2.4e-3997.56Show/hide
Query:  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG
        MDNHRHQK AKI+PLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG
Subjt:  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG

SwissProt top hitse value%identityAlignment
B3H4X8 MYB-like transcription factor TCL25.4e-2057.14Show/hide
Query:  RHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRR
        R +KQ+K T  ++ EV+S +W+FI MT QEEDLI RMH+L+GDRWDLIAGR+ GR+ ++IERYWIM + +    +RR
Subjt:  RHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRR

O22059 Transcription factor CPC2.2e-2157.95Show/hide
Query:  RVEKEGNMDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRR
        R +K   MD  R ++Q+K     SEEVSS  W+ + M+ +EEDLI RM+KL+GDRW+LIAGRIPGR PEEIERYW+M H   F  RRR
Subjt:  RVEKEGNMDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRR

Q84RD1 MYB-like transcription factor ETC22.1e-1960.53Show/hide
Query:  KQAKIT--PLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRR
        +Q K T    +SEEVSS  W+FI+MT QEEDLI RM++L+G+RWDLIAGR+ GRK  EIERYWIM + + F  +RR
Subjt:  KQAKIT--PLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRR

Q8GV05 Transcription factor TRY3.0e-2667.07Show/hide
Query:  NMDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRR
        N D  R +KQ KI   +SEEVSS  W+FI MT QEEDLI RM++L+GDRWDLIAGR+PGR+PEEIERYWIM + EGF  +RR
Subjt:  NMDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRR

Q9M157 MYB-like transcription factor ETC31.6e-1961.64Show/hide
Query:  MDNHRHQKQAK---ITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIM
        MDNHR  KQ K   I    SEEVSS  W+ + M+ +EEDL+ RMHKL+GDRW+LIAGRIPGR   EIER+W+M
Subjt:  MDNHRHQKQAK---ITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIM

Arabidopsis top hitse value%identityAlignment
AT2G30420.1 Homeodomain-like superfamily protein1.5e-2060.53Show/hide
Query:  KQAKIT--PLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRR
        +Q K T    +SEEVSS  W+FI+MT QEEDLI RM++L+G+RWDLIAGR+ GRK  EIERYWIM + + F  +RR
Subjt:  KQAKIT--PLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRR

AT2G30424.1 Homeodomain-like superfamily protein3.9e-2157.14Show/hide
Query:  RHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRR
        R +KQ+K T  ++ EV+S +W+FI MT QEEDLI RMH+L+GDRWDLIAGR+ GR+ ++IERYWIM + +    +RR
Subjt:  RHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRR

AT2G46410.1 Homeodomain-like superfamily protein1.6e-2257.95Show/hide
Query:  RVEKEGNMDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRR
        R +K   MD  R ++Q+K     SEEVSS  W+ + M+ +EEDLI RM+KL+GDRW+LIAGRIPGR PEEIERYW+M H   F  RRR
Subjt:  RVEKEGNMDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRR

AT4G01060.3 CAPRICE-like MYB31.1e-2061.64Show/hide
Query:  MDNHRHQKQAK---ITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIM
        MDNHR  KQ K   I    SEEVSS  W+ + M+ +EEDL+ RMHKL+GDRW+LIAGRIPGR   EIER+W+M
Subjt:  MDNHRHQKQAK---ITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIM

AT5G53200.1 Homeodomain-like superfamily protein2.1e-2767.07Show/hide
Query:  NMDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRR
        N D  R +KQ KI   +SEEVSS  W+FI MT QEEDLI RM++L+GDRWDLIAGR+PGR+PEEIERYWIM + EGF  +RR
Subjt:  NMDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACTGTATCATTGCCCCCTTCCTATTAACAATCTATCTCCCTCTTTTCTCTTGGTGTGTGAACAAATCTAAGGAAGCATGTGAGGAAAGTGAAGTAGAAGGAAGGAT
GCAGTTGGGGAGAAGGTTAGCTGAACTGAACACAGGCATTAGACCATTTCCCCAGGTTCCCAACTACCAGTTGAATATAATATTTTGGGTGAGATTACAAGGCTCAGCAC
TGCCTAAAACAATCAGAGTGGAGAAAGAAGGAAACATGGACAATCATCGTCACCAGAAACAAGCCAAAATCACTCCACTAGAATCTGAAGAAGTCAGCAGCACTAGGTGG
CAGTTTATAACTATGACAGCACAAGAGGAAGATCTTATCCATAGAATGCATAAGCTGATTGGAGATAGGTGGGATCTGATAGCAGGCAGAATTCCGGGGCGTAAACCAGA
AGAAATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGGAAAAAGAAGAAGAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTACTGTATCATTGCCCCCTTCCTATTAACAATCTATCTCCCTCTTTTCTCTTGGTGTGTGAACAAATCTAAGGAAGCATGTGAGGAAAGTGAAGTAGAAGGAAGGAT
GCAGTTGGGGAGAAGGTTAGCTGAACTGAACACAGGCATTAGACCATTTCCCCAGGTTCCCAACTACCAGTTGAATATAATATTTTGGGTGAGATTACAAGGCTCAGCAC
TGCCTAAAACAATCAGAGTGGAGAAAGAAGGAAACATGGACAATCATCGTCACCAGAAACAAGCCAAAATCACTCCACTAGAATCTGAAGAAGTCAGCAGCACTAGGTGG
CAGTTTATAACTATGACAGCACAAGAGGAAGATCTTATCCATAGAATGCATAAGCTGATTGGAGATAGGTGGGATCTGATAGCAGGCAGAATTCCGGGGCGTAAACCAGA
AGAAATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGGAAAAAGAAGAAGAGGATGAGAGAGACCGATAGATACAGGCAGTGAGGGTTCAGTCAATTAAGTCT
TCAAAGACTTCTGATGGGTTCTCTACTTCCTCTTTTGTGGTTTCCCTGAAGATAAACCATCTCCCTGATAGCTTTAGTGTATTGCAAGTACCCTTTCTAAGAACACATGG
TATGGAACTGAGCTATTTTTTATCAATCAAACAACACA
Protein sequenceShow/hide protein sequence
MYCIIAPFLLTIYLPLFSWCVNKSKEACEESEVEGRMQLGRRLAELNTGIRPFPQVPNYQLNIIFWVRLQGSALPKTIRVEKEGNMDNHRHQKQAKITPLESEEVSSTRW
QFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG