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Clc01G00710 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G00710
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGlyco_hydro_18 domain-containing protein
Genome locationClcChr01:500279..500704
RNA-Seq ExpressionClc01G00710
SyntenyClc01G00710
Gene Ontology termsGO:0016798 - hydrolase activity, acting on glycosyl bonds (molecular function)
InterPro domainsIPR017853 - Glycoside hydrolase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2016910.1 hypothetical protein ES319_D08G124000v1 [Gossypium barbadense]1.2e-0945.37Show/hide
Query:  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFD
        ++ S+  + Q+ N   Y  +NIAFL+KFGSR  P L++  HCNP NG C+   +EIK CQ K G      IG   G  Y   S ADAK+VAA     F  
Subjt:  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFD

Query:  GVSKSRPL
        G S SRPL
Subjt:  GVSKSRPL

KAB2069608.1 hypothetical protein ES319_A08G104800v1 [Gossypium barbadense]5.4e-1045.37Show/hide
Query:  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFD
        ++ S+  + Q+ N   Y  +NIAFL+KFGSR  P L++  HCNP NG C+   +EIK CQ K G      IG   G  Y   S ADAK+VAA     F  
Subjt:  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFD

Query:  GVSKSRPL
        G S SRPL
Subjt:  GVSKSRPL

MBA0853348.1 hypothetical protein [Gossypium schwendimanii]9.2e-1045.37Show/hide
Query:  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFD
        ++ S+  + Q+ N   Y  +NIAFL+KFGSR  P L++  HCNP NG C+   +EIK CQ K G      IG   G  Y   S ADAK+VAA     F  
Subjt:  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFD

Query:  GVSKSRPL
        G S SRPL
Subjt:  GVSKSRPL

XP_016743540.1 hevamine-A-like [Gossypium hirsutum]5.4e-1045.37Show/hide
Query:  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFD
        ++ S+  + Q+ N   Y  +NIAFL+KFGSR  P L++  HCNP NG C+   +EIK CQ K G      IG   G  Y   S ADAK+VAA     F  
Subjt:  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFD

Query:  GVSKSRPL
        G S SRPL
Subjt:  GVSKSRPL

XP_017644988.1 PREDICTED: hevamine-A-like [Gossypium arboreum]5.4e-1045.37Show/hide
Query:  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFD
        ++ S+  + Q+ N   Y  +NIAFL+KFGSR  P L++  HCNP NG C+   +EIK CQ K G      IG   G  Y   S ADAK+VAA     F  
Subjt:  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFD

Query:  GVSKSRPL
        G S SRPL
Subjt:  GVSKSRPL

TrEMBL top hitse value%identityAlignment
A0A1U8NXE6 hevamine-A-like2.6e-1045.37Show/hide
Query:  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFD
        ++ S+  + Q+ N   Y  +NIAFL+KFGSR  P L++  HCNP NG C+   +EIK CQ K G      IG   G  Y   S ADAK+VAA     F  
Subjt:  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFD

Query:  GVSKSRPL
        G S SRPL
Subjt:  GVSKSRPL

A0A2P5VYB5 Glyco_hydro_18 domain-containing protein2.6e-1045.37Show/hide
Query:  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFD
        ++ S+  + Q+ N   Y  +NIAFL+KFGSR  P L++  HCNP NG C+   +EIK CQ K G      IG   G  Y   S ADAK+VAA     F  
Subjt:  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFD

Query:  GVSKSRPL
        G S SRPL
Subjt:  GVSKSRPL

A0A5D2FI64 Glyco_hydro_18 domain-containing protein2.6e-1045.37Show/hide
Query:  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFD
        ++ S+  + Q+ N   Y  +NIAFL+KFGSR  P L++  HCNP NG C+   +EIK CQ K G      IG   G  Y   S ADAK+VAA     F  
Subjt:  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFD

Query:  GVSKSRPL
        G S SRPL
Subjt:  GVSKSRPL

A0A5D2PEB3 Glyco_hydro_18 domain-containing protein2.6e-1045.37Show/hide
Query:  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFD
        ++ S+  + Q+ N   Y  +NIAFL+KFGSR  P L++  HCNP NG C+   +EIK CQ K G      IG   G  Y   S ADAK+VAA     F  
Subjt:  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFD

Query:  GVSKSRPL
        G S SRPL
Subjt:  GVSKSRPL

A0A6P4Q3Z2 hevamine-A-like2.6e-1045.37Show/hide
Query:  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFD
        ++ S+  + Q+ N   Y  +NIAFL+KFGSR  P L++  HCNP NG C+   +EIK CQ K G      IG   G  Y   S ADAK+VAA     F  
Subjt:  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFD

Query:  GVSKSRPL
        G S SRPL
Subjt:  GVSKSRPL

SwissProt top hitse value%identityAlignment
P17541 Acidic endochitinase2.5e-1036.88Show/hide
Query:  HNVPNFLLDYYLV-PIFSSVRLESI----GDNKKEKTASKMHVTQSINYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQ
        H +   L  ++L+  IF S     I    G N  E + +    T   NY  +NIAFLS FGS   P L++  HCNP+N  C  L +EI  C+ +   +  
Subjt:  HNVPNFLLDYYLV-PIFSSVRLESI----GDNKKEKTASKMHVTQSINYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQ

Query:  QLIGDNCGNNYYNPSSA-DAKQVA-----AFFDGVSKSRPL
         L+    G   Y+ SSA DAKQVA     ++  G S SRPL
Subjt:  QLIGDNCGNNYYNPSSA-DAKQVA-----AFFDGVSKSRPL

P23472 Hevamine-A9.6e-1039.64Show/hide
Query:  GDNKKEKTASKMHVTQSINYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVA-----A
        G N  E T ++   T+   YS +NIAFL+KFG+   P++++  HCNP  G C  + N I+ CQ + G      +G   G +Y   S ADAK VA      
Subjt:  GDNKKEKTASKMHVTQSINYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVA-----A

Query:  FFDGVSKSRPL
        F  G S SRPL
Subjt:  FFDGVSKSRPL

P29024 Acidic endochitinase3.1e-0839.78Show/hide
Query:  NYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVA-----AFFDGVSKSRPL
        NY  +NIAFL  FG    P+L++  HCNP+   C    ++IK CQ K   +   L G     +Y   S+ DA QVA      F  G S SRPL
Subjt:  NYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVA-----AFFDGVSKSRPL

P29060 Acidic endochitinase9.6e-1035.14Show/hide
Query:  GDNKKEKTASKMHVTQSINYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVA-----A
        G N  E + +    T   NY+ +NIAFL  FG+   P L++  HC+PN G C  L N+I+ CQ++   +   L G     +Y+  S+ DA+ VA      
Subjt:  GDNKKEKTASKMHVTQSINYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVA-----A

Query:  FFDGVSKSRPL
        +  G S +RPL
Subjt:  FFDGVSKSRPL

P51614 Acidic endochitinase3.6e-0938.6Show/hide
Query:  GDNKKEKTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVA---
        G N  E T     +TQ+ N   YS +NIAFL+KFG+   P++++  HCNP +  C  +   I+ CQ++ G      IG   G +Y   SS DA+ VA   
Subjt:  GDNKKEKTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVA---

Query:  --AFFDGVSKSRPL
           F  G S SRPL
Subjt:  --AFFDGVSKSRPL

Arabidopsis top hitse value%identityAlignment
AT5G24090.1 chitinase A6.4e-0936.04Show/hide
Query:  GDNKKEKTASKMHVTQSINYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVA-----A
        G N  E   S    T    Y+ +N+AFL KFG+   P+L++  HCNP    C    +++K CQ + G      +G   G NY   S  DAK +A      
Subjt:  GDNKKEKTASKMHVTQSINYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVA-----A

Query:  FFDGVSKSRPL
        F  G S SRPL
Subjt:  FFDGVSKSRPL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAACAACATATCAATCCCCACAATGTTCCTAACTTTCTTCTTGATTACTACCTTGTCCCAATCTTCTCAAGTGTCAGATTAGAGAGTATTGGAGACAACAAAAA
GGAGAAGACAGCATCAAAGATGCATGTAACGCAAAGCATAAATTACAGTACCATCAACATTGCTTTTCTGTCGAAGTTCGGAAGTCGTCTAAAGCCAAAGCTCGACATTC
TTTCACATTGCAATCCAAACAATGGCAGGTGCAAAGATCTCGATAACGAGATTAAAGGCTGCCAACACAAAGCGGGTGCCATCGATCAACAGTTAATTGGCGACAACTGC
GGCAACAACTACTACAACCCTTCCTCTGCCGATGCAAAACAAGTAGCTGCCTTCTTCGACGGTGTTTCCAAGTCACGACCGTTGGAGATGTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAACAACATATCAATCCCCACAATGTTCCTAACTTTCTTCTTGATTACTACCTTGTCCCAATCTTCTCAAGTGTCAGATTAGAGAGTATTGGAGACAACAAAAA
GGAGAAGACAGCATCAAAGATGCATGTAACGCAAAGCATAAATTACAGTACCATCAACATTGCTTTTCTGTCGAAGTTCGGAAGTCGTCTAAAGCCAAAGCTCGACATTC
TTTCACATTGCAATCCAAACAATGGCAGGTGCAAAGATCTCGATAACGAGATTAAAGGCTGCCAACACAAAGCGGGTGCCATCGATCAACAGTTAATTGGCGACAACTGC
GGCAACAACTACTACAACCCTTCCTCTGCCGATGCAAAACAAGTAGCTGCCTTCTTCGACGGTGTTTCCAAGTCACGACCGTTGGAGATGTTTTAG
Protein sequenceShow/hide protein sequence
MAKQHINPHNVPNFLLDYYLVPIFSSVRLESIGDNKKEKTASKMHVTQSINYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNC
GNNYYNPSSADAKQVAAFFDGVSKSRPLEMF