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Clc01G00860 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G00860
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionWD repeat-containing protein 91-like protein
Genome locationClcChr01:589906..592832
RNA-Seq ExpressionClc01G00860
SyntenyClc01G00860
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33782.1 hypothetical protein [Cucumis melo subsp. melo]1.0e-1763.1Show/hide
Query:  RAVIMLDMISKEHIRISQQILNAPTPYDDAAGDSILID--GLELSFQVHLLEYHPFRIVQRKVYIASTLCALLAVAAFELYACK
        RA   LD+ISK+ I IS QILN  +P DD AGD+   D  GLELSFQV LL+YHP  +VQRK+YIAST+  LLAV+AFE+Y CK
Subjt:  RAVIMLDMISKEHIRISQQILNAPTPYDDAAGDSILID--GLELSFQVHLLEYHPFRIVQRKVYIASTLCALLAVAAFELYACK

KAA0042578.1 WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa]1.3e-1260.92Show/hide
Query:  RAVIMLDMISKEHIRISQQILNAPTPYDDAAGDSILIDG--LELSFQVHLL-EYHP--FRIVQRKVYIASTLCALLAVAAFELYACK
        RA   LD+I K+   ISQQILN   P D   GDSI  D   LELSF+V LL EYH   F +VQRKVYIAST+  LLAVAAFE+Y CK
Subjt:  RAVIMLDMISKEHIRISQQILNAPTPYDDAAGDSILIDG--LELSFQVHLL-EYHP--FRIVQRKVYIASTLCALLAVAAFELYACK

KAA0042580.1 WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa]6.0e-1864.29Show/hide
Query:  RAVIMLDMISKEHIRISQQILNAPTPYDDAAGDSILID--GLELSFQVHLLEYHPFRIVQRKVYIASTLCALLAVAAFELYACK
        RA   LD+ISK  I IS QILN  +P DD AGD+   D  GLELSFQV LL+YHP  +VQRK+YIAST+  LLAVAAFE+Y CK
Subjt:  RAVIMLDMISKEHIRISQQILNAPTPYDDAAGDSILID--GLELSFQVHLLEYHPFRIVQRKVYIASTLCALLAVAAFELYACK

XP_022157130.1 uncharacterized protein LOC111023927 [Momordica charantia]6.0e-1055.56Show/hide
Query:  LDMISKEHIRISQQILNAPTPYDDA-----AGDSILIDGLELSFQVHLLEYHPFRIVQRKVYIASTLCALLAVAAFELYAC
        +D+I KE   I QQIL A +  DD      AGDS   DG + SF V LLEY  FRIV+RK YI +T+ ALLAV A ELYAC
Subjt:  LDMISKEHIRISQQILNAPTPYDDA-----AGDSILIDGLELSFQVHLLEYHPFRIVQRKVYIASTLCALLAVAAFELYAC

XP_022157176.1 uncharacterized protein LOC111023953 isoform X2 [Momordica charantia]4.4e-0547.5Show/hide
Query:  LDMISKEHIRISQQILNAPT--PYDDAAGDSILIDGLELSFQVHLLEYHPFRIVQRKVYIASTLCALLAVAAFELYACKH
        LDMI KE I + QQIL A      D A       DG E  F   +L    FR V RKVYI  T+CAL+AV A ELY  K+
Subjt:  LDMISKEHIRISQQILNAPT--PYDDAAGDSILIDGLELSFQVHLLEYHPFRIVQRKVYIASTLCALLAVAAFELYACKH

TrEMBL top hitse value%identityAlignment
A0A0A0KM15 Uncharacterized protein4.5e-1969.05Show/hide
Query:  RAVIMLDMISKEHIRISQQILNAPTPYDDAAGDSILIDG--LELSFQVHLLEYHPFRIVQRKVYIASTLCALLAVAAFELYACK
        RA   LD+ISK+ I IS QILN  +P DD AGDSI  D   LELSFQV LL YHPF +VQRKVYIAST+  LLAVAAFELY CK
Subjt:  RAVIMLDMISKEHIRISQQILNAPTPYDDAAGDSILIDG--LELSFQVHLLEYHPFRIVQRKVYIASTLCALLAVAAFELYACK

A0A5A7TGW8 WD repeat-containing protein 91-like protein2.9e-1864.29Show/hide
Query:  RAVIMLDMISKEHIRISQQILNAPTPYDDAAGDSILID--GLELSFQVHLLEYHPFRIVQRKVYIASTLCALLAVAAFELYACK
        RA   LD+ISK  I IS QILN  +P DD AGD+   D  GLELSFQV LL+YHP  +VQRK+YIAST+  LLAVAAFE+Y CK
Subjt:  RAVIMLDMISKEHIRISQQILNAPTPYDDAAGDSILID--GLELSFQVHLLEYHPFRIVQRKVYIASTLCALLAVAAFELYACK

A0A5D3C430 WD repeat-containing protein 91-like protein6.3e-1360.92Show/hide
Query:  RAVIMLDMISKEHIRISQQILNAPTPYDDAAGDSILIDG--LELSFQVHLL-EYHP--FRIVQRKVYIASTLCALLAVAAFELYACK
        RA   LD+I K+   ISQQILN   P D   GDSI  D   LELSF+V LL EYH   F +VQRKVYIAST+  LLAVAAFE+Y CK
Subjt:  RAVIMLDMISKEHIRISQQILNAPTPYDDAAGDSILIDG--LELSFQVHLL-EYHP--FRIVQRKVYIASTLCALLAVAAFELYACK

A0A6J1DS87 uncharacterized protein LOC1110239272.9e-1055.56Show/hide
Query:  LDMISKEHIRISQQILNAPTPYDDA-----AGDSILIDGLELSFQVHLLEYHPFRIVQRKVYIASTLCALLAVAAFELYAC
        +D+I KE   I QQIL A +  DD      AGDS   DG + SF V LLEY  FRIV+RK YI +T+ ALLAV A ELYAC
Subjt:  LDMISKEHIRISQQILNAPTPYDDA-----AGDSILIDGLELSFQVHLLEYHPFRIVQRKVYIASTLCALLAVAAFELYAC

E5GBE1 Uncharacterized protein4.9e-1863.1Show/hide
Query:  RAVIMLDMISKEHIRISQQILNAPTPYDDAAGDSILID--GLELSFQVHLLEYHPFRIVQRKVYIASTLCALLAVAAFELYACK
        RA   LD+ISK+ I IS QILN  +P DD AGD+   D  GLELSFQV LL+YHP  +VQRK+YIAST+  LLAV+AFE+Y CK
Subjt:  RAVIMLDMISKEHIRISQQILNAPTPYDDAAGDSILID--GLELSFQVHLLEYHPFRIVQRKVYIASTLCALLAVAAFELYACK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTGGAGAGCTGAAGAGCACATTTGATAAGCTCAACCTTATTGCTGAAAACCAACAGCAGAGAGCTGTTATCATGTTGGACATGATTTCCAAGGAACACATTCG
AATCTCCCAACAGATTTTGAATGCTCCAACCCCATATGACGATGCGGCTGGAGATTCAATTTTAATTGATGGGTTGGAGTTGAGTTTCCAGGTGCACTTACTTGAGTACC
ATCCATTTAGAATTGTCCAGAGGAAAGTTTATATTGCTTCCACTCTCTGTGCTCTGCTTGCTGTTGCTGCTTTTGAACTATACGCCTGTAAGCACTTTAAACTACATAAT
CTCTTCCAGATAGATACCTGGTCTAATTCAGAACACACTCTTTTGTTGGCGTTACTTCAAGGAAAGGATGGAACACTTATTGGATTGGATGCTGGTACATATGCTTTAGA
TGAATTAATCCATAGCCATTGCAACATTGTTGAGGCTTTCTTCACTTCGACAAAATGTCATGCTATAGCTGACTCCCATGTAAACCAGTATGGTGATCTACCTTGCAGCA
GGCTGATAGAACCAAAAGAATATGAATCCACAAAGTACAAAAACATTGCAACTTGGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTTGGAGAGCTGAAGAGCACATTTGATAAGCTCAACCTTATTGCTGAAAACCAACAGCAGAGAGCTGTTATCATGTTGGACATGATTTCCAAGGAACACATTCG
AATCTCCCAACAGATTTTGAATGCTCCAACCCCATATGACGATGCGGCTGGAGATTCAATTTTAATTGATGGGTTGGAGTTGAGTTTCCAGGTGCACTTACTTGAGTACC
ATCCATTTAGAATTGTCCAGAGGAAAGTTTATATTGCTTCCACTCTCTGTGCTCTGCTTGCTGTTGCTGCTTTTGAACTATACGCCTGTAAGCACTTTAAACTACATAAT
CTCTTCCAGATAGATACCTGGTCTAATTCAGAACACACTCTTTTGTTGGCGTTACTTCAAGGAAAGGATGGAACACTTATTGGATTGGATGCTGGTACATATGCTTTAGA
TGAATTAATCCATAGCCATTGCAACATTGTTGAGGCTTTCTTCACTTCGACAAAATGTCATGCTATAGCTGACTCCCATGTAAACCAGTATGGTGATCTACCTTGCAGCA
GGCTGATAGAACCAAAAGAATATGAATCCACAAAGTACAAAAACATTGCAACTTGGAGCAGTTAGATGATTATGAGGGTGATGGAACGTATGGTTCTGGTCTTTGAATTA
TTAGAATTTGGAAGAAACATACAAGTACTGACAAGATTATGGTTATCATGAATAGGGTTGATACCTGTTTTTCTCCATCTAACGGTCACAAATGTATATTACCTTTTT
Protein sequenceShow/hide protein sequence
MEFGELKSTFDKLNLIAENQQQRAVIMLDMISKEHIRISQQILNAPTPYDDAAGDSILIDGLELSFQVHLLEYHPFRIVQRKVYIASTLCALLAVAAFELYACKHFKLHN
LFQIDTWSNSEHTLLLALLQGKDGTLIGLDAGTYALDELIHSHCNIVEAFFTSTKCHAIADSHVNQYGDLPCSRLIEPKEYESTKYKNIATWSS