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Clc01G01100 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G01100
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr01:856597..859874
RNA-Seq ExpressionClc01G01100
SyntenyClc01G01100
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145897.1 uncharacterized protein LOC101214743 [Cucumis sativus]8.1e-7683.24Show/hide
Query:  MSGGVGPTCSDISLPKEQESLHKEAWDPKQQQEIKLPGGGVGRRKAAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAFPTLGGAG
        MSGGVGP C DISLPKEQES+HKEAWDPKQ       GG VGRRKAAAFLS RQLNALAVVIIFSASGMVCAEDL FV+FS+MYMYF+SRVAFP +GGAG
Subjt:  MSGGVGPTCSDISLPKEQESLHKEAWDPKQQQEIKLPGGGVGRRKAAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAFPTLGGAG

Query:  EPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVPGF
        +  VF PENR+LRLYV FAA+VGLFLP+AYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVA  D FSTPIRVFVP F
Subjt:  EPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVPGF

XP_008437515.1 PREDICTED: uncharacterized protein LOC103482907 [Cucumis melo]1.0e-7886.59Show/hide
Query:  MSGGVGPTCSDISLPKEQESLHKEAWDPKQQQEIKLPGGGVGRRKAAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAFPTLGGAG
        MSGGVGPTCSDISLPKEQES+HKEAWDPKQ        GGVGRRKAAAFLS RQLNALAVVIIFSASGMVCAEDLAFVVFS+MYMYFISRVAFP +GGAG
Subjt:  MSGGVGPTCSDISLPKEQESLHKEAWDPKQQQEIKLPGGGVGRRKAAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAFPTLGGAG

Query:  EPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVPGF
        +  VF PENR+LRLYV FAA++GLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVA  DRFSTPIRVFVP F
Subjt:  EPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVPGF

XP_022973006.1 uncharacterized protein LOC111471524 [Cucurbita maxima]1.8e-7584.32Show/hide
Query:  MSGGVGPTCSDISLPKEQESLHKEAWDPKQQQE-----IKLPGGGVGRRK---AAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVA
        MSGGVGPTCSDISLP EQE LHKE+ DPKQQQ+     IK P GGVGR++   AAAFLSF+QLNALAVV+IFSASGMVCAEDLAFVVFSMMYMYFISRVA
Subjt:  MSGGVGPTCSDISLPKEQESLHKEAWDPKQQQE-----IKLPGGGVGRRK---AAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVA

Query:  FPTLGGAGEPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVP
        FP L GAGEPTVFS ENR+LRLY FF  VVG FLPIAYILEGFFEEDKEGIKAASPHVFLLASQ FMEGVAG DRFSTPIRVFVP
Subjt:  FPTLGGAGEPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVP

XP_023551347.1 uncharacterized protein LOC111809194 [Cucurbita pepo subsp. pepo]4.0e-7584.24Show/hide
Query:  MSGGVGPTCSDISLPKEQESLHKEAWDPKQQQE----IKLPGGGVGRRK---AAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAF
        MSGGVGPTCSDISLP EQE LHKE+ DPKQQQ+    IK P GGVG+++   AAAFLSF+QLNALAVV+IFSASGMVCAEDLAFVVFSMMYMYFISRVAF
Subjt:  MSGGVGPTCSDISLPKEQESLHKEAWDPKQQQE----IKLPGGGVGRRK---AAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAF

Query:  PTLGGAGEPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVP
        P L GAGEPTVFS ENR+LRLY FF  VVG FLPIAYILEGFFEEDKEGIKAASPHVFLLASQ FMEGVAG DRFSTPIRVFVP
Subjt:  PTLGGAGEPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVP

XP_038906981.1 uncharacterized protein LOC120092829 [Benincasa hispida]3.2e-8896.11Show/hide
Query:  MSGGVGPTCSDISLPKEQESLHKEAWDPK-QQQEIKLPGGGVGRRKAAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAFPTLGGA
        MSGGVGPTCSDISLPKEQESLHKEAWD K QQQ IKLP GGVGRRKAAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAFPTLG A
Subjt:  MSGGVGPTCSDISLPKEQESLHKEAWDPK-QQQEIKLPGGGVGRRKAAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAFPTLGGA

Query:  GEPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVPGF
        GEPTVFSPEN+MLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVP F
Subjt:  GEPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVPGF

TrEMBL top hitse value%identityAlignment
A0A0A0KK26 Uncharacterized protein3.9e-7683.24Show/hide
Query:  MSGGVGPTCSDISLPKEQESLHKEAWDPKQQQEIKLPGGGVGRRKAAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAFPTLGGAG
        MSGGVGP C DISLPKEQES+HKEAWDPKQ       GG VGRRKAAAFLS RQLNALAVVIIFSASGMVCAEDL FV+FS+MYMYF+SRVAFP +GGAG
Subjt:  MSGGVGPTCSDISLPKEQESLHKEAWDPKQQQEIKLPGGGVGRRKAAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAFPTLGGAG

Query:  EPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVPGF
        +  VF PENR+LRLYV FAA+VGLFLP+AYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVA  D FSTPIRVFVP F
Subjt:  EPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVPGF

A0A1S3AUS6 uncharacterized protein LOC1034829074.9e-7986.59Show/hide
Query:  MSGGVGPTCSDISLPKEQESLHKEAWDPKQQQEIKLPGGGVGRRKAAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAFPTLGGAG
        MSGGVGPTCSDISLPKEQES+HKEAWDPKQ        GGVGRRKAAAFLS RQLNALAVVIIFSASGMVCAEDLAFVVFS+MYMYFISRVAFP +GGAG
Subjt:  MSGGVGPTCSDISLPKEQESLHKEAWDPKQQQEIKLPGGGVGRRKAAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAFPTLGGAG

Query:  EPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVPGF
        +  VF PENR+LRLYV FAA++GLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVA  DRFSTPIRVFVP F
Subjt:  EPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVPGF

A0A5D3C472 Uncharacterized protein4.9e-7986.59Show/hide
Query:  MSGGVGPTCSDISLPKEQESLHKEAWDPKQQQEIKLPGGGVGRRKAAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAFPTLGGAG
        MSGGVGPTCSDISLPKEQES+HKEAWDPKQ        GGVGRRKAAAFLS RQLNALAVVIIFSASGMVCAEDLAFVVFS+MYMYFISRVAFP +GGAG
Subjt:  MSGGVGPTCSDISLPKEQESLHKEAWDPKQQQEIKLPGGGVGRRKAAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAFPTLGGAG

Query:  EPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVPGF
        +  VF PENR+LRLYV FAA++GLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVA  DRFSTPIRVFVP F
Subjt:  EPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVPGF

A0A6J1E3L1 uncharacterized protein LOC1114302823.3e-7584.24Show/hide
Query:  MSGGVGPTCSDISLPKEQESLHKEAWDPKQQQE----IKLPGGGVGRRK---AAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAF
        MSGGVGPTCSDISLP EQE LHKE+ DPKQQQ+    IK P GGVGR++   AAAFLSF+QLNALAVV+IFSASGMVCAEDLAFVVFSMMYMYFISRVAF
Subjt:  MSGGVGPTCSDISLPKEQESLHKEAWDPKQQQE----IKLPGGGVGRRK---AAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAF

Query:  PTLGGAGEPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVP
        P L GAGEPTVFS ENR+LRLY FF  VVG FLPIAYILEGFFEEDKEGIKAASPHVFLLASQ FMEGVAG DRFS PIRVFVP
Subjt:  PTLGGAGEPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVP

A0A6J1I7I0 uncharacterized protein LOC1114715248.7e-7684.32Show/hide
Query:  MSGGVGPTCSDISLPKEQESLHKEAWDPKQQQE-----IKLPGGGVGRRK---AAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVA
        MSGGVGPTCSDISLP EQE LHKE+ DPKQQQ+     IK P GGVGR++   AAAFLSF+QLNALAVV+IFSASGMVCAEDLAFVVFSMMYMYFISRVA
Subjt:  MSGGVGPTCSDISLPKEQESLHKEAWDPKQQQE-----IKLPGGGVGRRK---AAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVA

Query:  FPTLGGAGEPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVP
        FP L GAGEPTVFS ENR+LRLY FF  VVG FLPIAYILEGFFEEDKEGIKAASPHVFLLASQ FMEGVAG DRFSTPIRVFVP
Subjt:  FPTLGGAGEPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27990.1 unknown protein7.1e-2240.14Show/hide
Query:  GGGVGRRKAAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAFPTLG-GAGEPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFF
        GGG G    +  L   +L  +A +++FSASG+V   D+ F  F+ +Y+  +SR+AFP+ G     P VF   +++ RLYV     +GLFLP+AY+L GF 
Subjt:  GGGVGRRKAAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAFPTLG-GAGEPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFF

Query:  EEDKEGIKAASPHVFLLASQVFMEGV-AGKDRFSTPIRVFVP
          D   +++A+PH+FLL+ Q+  E V +G   FS P+R  VP
Subjt:  EEDKEGIKAASPHVFLLASQVFMEGV-AGKDRFSTPIRVFVP

AT5G23920.1 unknown protein5.1e-2033.74Show/hide
Query:  QESLHKEAWDPKQQQEIKLPGGGVGRRKAAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMY-FISRVAFPTLGGAGEPTVFSPENRMLRLYV
        +E   K+  D K       P  G+  RK       RQL  L+ +I+ +A G+V   ++AFV+   +Y+Y F+SR AFP      +  + +P+N++ + Y 
Subjt:  QESLHKEAWDPKQQQEIKLPGGGVGRRKAAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMY-FISRVAFPTLGGAGEPTVFSPENRMLRLYV

Query:  FFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVPGF
           A++GL  P+ YI +G +  D  G  AA+PH+FLL+ Q F E +   D++S PI +  P F
Subjt:  FFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVPGF

AT5G52420.1 unknown protein6.4e-3946.63Show/hide
Query:  MSGGVGPTCSDISLPKEQESLHKEAWDPKQQQEIKLPGGGVGRRKAAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAFPTLGGAG
        MSGGVGPT +DI+LPKE+E  H      + Q    +   G    K A F SFRQLN LA++I+ SASG+V  +D  F + +++Y +F+S++ FP      
Subjt:  MSGGVGPTCSDISLPKEQESLHKEAWDPKQQQEIKLPGGGVGRRKAAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAFPTLGGAG

Query:  -EPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVP
         +  + S  N++ R+YV  A +VGL +PI YI EG  E+DK G+ AA+PHVFLLASQ+FMEG+A    FS P R+ VP
Subjt:  -EPTVFSPENRMLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGGTGGGGTGGGGCCTACATGCAGTGACATAAGCCTCCCAAAAGAACAAGAGAGCCTCCACAAAGAAGCATGGGACCCAAAGCAACAGCAAGAGATCAAATTACC
CGGCGGCGGCGTTGGGCGGAGGAAGGCGGCGGCGTTTTTGAGTTTCCGGCAACTGAATGCGCTGGCGGTGGTGATTATATTTTCGGCCAGTGGGATGGTTTGCGCTGAAG
ACTTGGCGTTTGTGGTGTTTTCGATGATGTATATGTATTTCATTTCACGAGTGGCGTTTCCGACGCTGGGCGGCGCCGGAGAGCCGACGGTGTTTAGCCCCGAGAATAGG
ATGCTCCGGCTTTACGTGTTCTTCGCGGCCGTGGTGGGGCTGTTCCTCCCCATAGCTTACATTCTTGAAGGGTTTTTTGAAGAAGATAAAGAAGGCATTAAAGCTGCTTC
TCCACACGTCTTTCTTCTCGCTAGCCAGGTTTTCATGGAAGGCGTGGCGGGGAAAGACAGATTCTCAACACCAATCCGTGTGTTTGTGCCAGGTTTTCTACAACTCGAGA
AGGATCTTCACCCTCGCAGAGTGGCTGCGGGACGAGTTCGCCAAGGAAGATAA
mRNA sequenceShow/hide mRNA sequence
CCGCCGATCGCTCACAGCATGCCACATGTCCACTTTCCCCACCACACTCGTTAAACTCCCATCTCCATTTCCTTCCTCACTTCCTCACTTCTCTTATCTTATTTTCTTCT
CTGAAAAAAAATATATATCAAAATGTCCGGTGGGGTGGGGCCTACATGCAGTGACATAAGCCTCCCAAAAGAACAAGAGAGCCTCCACAAAGAAGCATGGGACCCAAAGC
AACAGCAAGAGATCAAATTACCCGGCGGCGGCGTTGGGCGGAGGAAGGCGGCGGCGTTTTTGAGTTTCCGGCAACTGAATGCGCTGGCGGTGGTGATTATATTTTCGGCC
AGTGGGATGGTTTGCGCTGAAGACTTGGCGTTTGTGGTGTTTTCGATGATGTATATGTATTTCATTTCACGAGTGGCGTTTCCGACGCTGGGCGGCGCCGGAGAGCCGAC
GGTGTTTAGCCCCGAGAATAGGATGCTCCGGCTTTACGTGTTCTTCGCGGCCGTGGTGGGGCTGTTCCTCCCCATAGCTTACATTCTTGAAGGGTTTTTTGAAGAAGATA
AAGAAGGCATTAAAGCTGCTTCTCCACACGTCTTTCTTCTCGCTAGCCAGGTTTTCATGGAAGGCGTGGCGGGGAAAGACAGATTCTCAACACCAATCCGTGTGTTTGTG
CCAGGTTTTCTACAACTCGAGAAGGATCTTCACCCTCGCAGAGTGGCTGCGGGACGAGTTCGCCAAGGAAGATAAGGAGTACAGCGGCTCCATGCGGCGGCTGCTGGTCG
GAAGAGCCCTTGCTGTGGCCAACATGGCGCTTTGGAGCTTCAATTTATTTGGGTTCTTGTTGCCTGTGTATTTGCCAAGAGCTTTCAAGAGATATTATTCTCTCTACAAA
TCCAAAGATTGACAAATCTTTGTCTTTTGGGTATGTTTGGTTCAAATTGTCAACTCCCAACTTTGTTCTTAAAAATAATTATTGTGGAAGACAATTAATCTGTTTTTTTC
TTTCTTTTTAAGGTGTAGCAAATATGTTTGAATAGTTTGGAGTGTTTGGATGTGTAGTGGAAGTTTCTAATGTAACTTTCTGCCTTTTGCAGCTAATGAAAAGAAATTGC
CTCTTCTTTGTCCTCTTCTATTCATGGATTAGGATTAAAGATGAATGACAATAAAAAAATTTTTAACTCA
Protein sequenceShow/hide protein sequence
MSGGVGPTCSDISLPKEQESLHKEAWDPKQQQEIKLPGGGVGRRKAAAFLSFRQLNALAVVIIFSASGMVCAEDLAFVVFSMMYMYFISRVAFPTLGGAGEPTVFSPENR
MLRLYVFFAAVVGLFLPIAYILEGFFEEDKEGIKAASPHVFLLASQVFMEGVAGKDRFSTPIRVFVPGFLQLEKDLHPRRVAAGRVRQGR