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Clc01G01320 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G01320
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTumor necrosis factor receptor family protein
Genome locationClcChr01:1067348..1071283
RNA-Seq ExpressionClc01G01320
SyntenyClc01G01320
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7035535.1 hypothetical protein SDJN02_02332 [Cucurbita argyrosperma subsp. argyrosperma]1.0e-5884.62Show/hide
Query:  AGGGGASAGLVFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVG
        A GGG SAGLVF TFAR+FSR RAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGV GLNSKTHMKLLLKWMRGRKML LFC QVG
Subjt:  AGGGGASAGLVFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVG

Query:  SNKKFLLCTPGDPQAEQLKSSSESVVQRKKRAKSPVKRRKASK
        SNKKFLL TP DP+ E+LKS+SE VVQR+K+ K+ ++RRKASK
Subjt:  SNKKFLLCTPGDPQAEQLKSSSESVVQRKKRAKSPVKRRKASK

XP_004145885.1 uncharacterized protein LOC101211684 [Cucumis sativus]7.0e-6086.71Show/hide
Query:  AGGGGASAGLVFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVG
        A GGG  AGLVF TFAR FSRKRAENLRKINPKLTPQEASLVAQDLYGVV+QHGPLT+SNAWIKAQESGV+GLNSKTHMKLLLKWMRGRKMLNLFC  VG
Subjt:  AGGGGASAGLVFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVG

Query:  SNKKFLLCTPGDPQAEQLKSSSESVVQRKKRAKSPVKRRKASK
        SNKKFLLCTP DP+AE+LK+SSE+  QRKKRAKSP KRRK SK
Subjt:  SNKKFLLCTPGDPQAEQLKSSSESVVQRKKRAKSPVKRRKASK

XP_022996189.1 uncharacterized protein LOC111491495 [Cucurbita maxima]1.0e-5884.62Show/hide
Query:  AGGGGASAGLVFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVG
        A GGG SAGLVF TFAR+FSR RAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGV GLNSKTHMKLLLKWMRGRKML LFC QVG
Subjt:  AGGGGASAGLVFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVG

Query:  SNKKFLLCTPGDPQAEQLKSSSESVVQRKKRAKSPVKRRKASK
        SNKKFLL TP DP+AE+LKS+SE VVQR+K+ K+ ++R+KASK
Subjt:  SNKKFLLCTPGDPQAEQLKSSSESVVQRKKRAKSPVKRRKASK

XP_023534502.1 uncharacterized protein LOC111796041 [Cucurbita pepo subsp. pepo]1.0e-5883.33Show/hide
Query:  EAGGGGASAGLVFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQV
        + GGGG SAGLVF TFAR+FSR RAENLRKINPKLTP EASLVAQDLYGVVKQHGPLTVSNAWIKAQESGV GLNSKTHMKLLLKWMRGRKML LFC QV
Subjt:  EAGGGGASAGLVFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQV

Query:  GSNKKFLLCTPGDPQAEQLKSSSESVVQRKKRAKSPVKRRKASK
        GSNKKFLL TP DP+AE+LKS+SE VVQR+K+ K+ ++RRK SK
Subjt:  GSNKKFLLCTPGDPQAEQLKSSSESVVQRKKRAKSPVKRRKASK

XP_038876162.1 uncharacterized protein LOC120068455 [Benincasa hispida]5.6e-6593.71Show/hide
Query:  AGGGGASAGLVFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVG
        A GGG SAGLVF TFAR+FSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGV+GLNSKTHMKLLLKWMRGRKMLNLFC QVG
Subjt:  AGGGGASAGLVFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVG

Query:  SNKKFLLCTPGDPQAEQLKSSSESVVQRKKRAKSPVKRRKASK
        SNKKFLLCTP DP+AEQLKSSSES VQRKKRAKSPVKRRKASK
Subjt:  SNKKFLLCTPGDPQAEQLKSSSESVVQRKKRAKSPVKRRKASK

TrEMBL top hitse value%identityAlignment
A0A0A0KK52 Uncharacterized protein3.4e-6086.71Show/hide
Query:  AGGGGASAGLVFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVG
        A GGG  AGLVF TFAR FSRKRAENLRKINPKLTPQEASLVAQDLYGVV+QHGPLT+SNAWIKAQESGV+GLNSKTHMKLLLKWMRGRKMLNLFC  VG
Subjt:  AGGGGASAGLVFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVG

Query:  SNKKFLLCTPGDPQAEQLKSSSESVVQRKKRAKSPVKRRKASK
        SNKKFLLCTP DP+AE+LK+SSE+  QRKKRAKSP KRRK SK
Subjt:  SNKKFLLCTPGDPQAEQLKSSSESVVQRKKRAKSPVKRRKASK

A0A1S3ATS9 uncharacterized protein LOC1034828881.1e-5885.82Show/hide
Query:  GGGASAGLVFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVGSN
        GGG   GLVF TFAR FSRKRAENLRKINPKLTPQEASLVAQDLYGV++QHGPLTVSNAWIKAQESGV+GLNSKTHMKLLLKWMRGR+MLNLFC  VGSN
Subjt:  GGGASAGLVFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVGSN

Query:  KKFLLCTPGDPQAEQLKSSSESVVQRKKRAKSPVKRRKASK
        KKFLLCTP DP+AE+LK+ SES  QRKKRAKSP KRRK SK
Subjt:  KKFLLCTPGDPQAEQLKSSSESVVQRKKRAKSPVKRRKASK

A0A6J1E538 uncharacterized protein LOC1110261277.9e-5784.03Show/hide
Query:  AGGGGASAGLVFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVG
        A GGG SAGLVF TFAR+FSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPL++SNAWIKAQE GVSGLNSKTHMKL+LKWMRGRKML L C QVG
Subjt:  AGGGGASAGLVFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVG

Query:  SNKKFLLCT-PGDPQAEQLKSSSESVVQRKKRAKSPVKRRKASK
        SNKKFLL T P DPQA+QLKSSSE  VQR+KR K P +RRK SK
Subjt:  SNKKFLLCT-PGDPQAEQLKSSSESVVQRKKRAKSPVKRRKASK

A0A6J1H3U5 uncharacterized protein LOC1114598526.4e-5984.62Show/hide
Query:  AGGGGASAGLVFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVG
        A GGG SAGLVF TF R+FSR RAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGV GLNSKTHMKLLLKWMRGRKML LFC QVG
Subjt:  AGGGGASAGLVFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVG

Query:  SNKKFLLCTPGDPQAEQLKSSSESVVQRKKRAKSPVKRRKASK
        SNKKFLL TP DP+AE+LKS+SE VVQR+K+ K+ ++RRKASK
Subjt:  SNKKFLLCTPGDPQAEQLKSSSESVVQRKKRAKSPVKRRKASK

A0A6J1K817 uncharacterized protein LOC1114914954.9e-5984.62Show/hide
Query:  AGGGGASAGLVFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVG
        A GGG SAGLVF TFAR+FSR RAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGV GLNSKTHMKLLLKWMRGRKML LFC QVG
Subjt:  AGGGGASAGLVFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVG

Query:  SNKKFLLCTPGDPQAEQLKSSSESVVQRKKRAKSPVKRRKASK
        SNKKFLL TP DP+AE+LKS+SE VVQR+K+ K+ ++R+KASK
Subjt:  SNKKFLLCTPGDPQAEQLKSSSESVVQRKKRAKSPVKRRKASK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G73940.1 unknown protein1.9e-3152.7Show/hide
Query:  AGGGG-----ASAGLVF-------GTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRG
        AGGGG       A  +F           R+ SR+RA N+RKINPK+  QEA  ++  LY + K HGPL+V N W++AQE+GVSGLNSKTHMKLLLKWMRG
Subjt:  AGGGG-----ASAGLVF-------GTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRG

Query:  RKMLNLFCIQVGSNKKFL-LCTPGDPQAEQLKSSSESVVQ--RKKRAK
        +KML L C QVGS+KKF     P DP  EQ  +  E+  Q  +KKR+K
Subjt:  RKMLNLFCIQVGSNKKFL-LCTPGDPQAEQLKSSSESVVQ--RKKRAK

AT5G49410.1 unknown protein2.7e-1737.37Show/hide
Query:  VFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVGSNKKFLLCT
        V G   R F+ K    ++ I     P++   + + ++ ++K HGPLT++  W + +E G+ GL SK HMK++L+WMR R+ L L C  VG +K+FL  T
Subjt:  VFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVGSNKKFLLCT

AT5G49410.2 unknown protein2.7e-1737.37Show/hide
Query:  VFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVGSNKKFLLCT
        V G   R F+ K    ++ I     P++   + + ++ ++K HGPLT++  W + +E G+ GL SK HMK++L+WMR R+ L L C  VG +K+FL  T
Subjt:  VFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHMKLLLKWMRGRKMLNLFCIQVGSNKKFLLCT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTTCTACAATTACGATCATTCCAAACCAACCGAACTGTCGACTCTCTCCGAATCTCAGAATCTTGGCGGCGGCGGCAAACCGGTGCGAGGCGGGTGGAGGTGGAGC
ATCTGCTGGCCTTGTGTTCGGCACATTTGCGAGGTTTTTCTCGAGGAAGCGAGCAGAGAATCTTAGGAAGATCAATCCCAAGTTGACTCCTCAGGAAGCTTCTTTGGTTG
CTCAAGATCTCTATGGTGTTGTCAAACAGCACGGCCCTCTAACCGTTTCCAATGCTTGGATTAAAGCTCAGGAGTCTGGCGTGAGTGGATTGAACAGCAAAACACACATG
AAGCTACTGCTAAAATGGATGAGAGGAAGGAAGATGCTCAACCTTTTCTGCATCCAAGTTGGTTCCAACAAGAAATTTCTGCTTTGTACTCCCGGTGATCCTCAGGCAGA
ACAGTTGAAGAGTTCTTCAGAATCTGTAGTCCAGAGAAAGAAGAGAGCAAAGTCACCAGTAAAGAGAAGAAAGGCATCAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCGTTCTACAATTACGATCATTCCAAACCAACCGAACTGTCGACTCTCTCCGAATCTCAGAATCTTGGCGGCGGCGGCAAACCGGTGCGAGGCGGGTGGAGGTGGAGC
ATCTGCTGGCCTTGTGTTCGGCACATTTGCGAGGTTTTTCTCGAGGAAGCGAGCAGAGAATCTTAGGAAGATCAATCCCAAGTTGACTCCTCAGGAAGCTTCTTTGGTTG
CTCAAGATCTCTATGGTGTTGTCAAACAGCACGGCCCTCTAACCGTTTCCAATGCTTGGATTAAAGCTCAGGAGTCTGGCGTGAGTGGATTGAACAGCAAAACACACATG
AAGCTACTGCTAAAATGGATGAGAGGAAGGAAGATGCTCAACCTTTTCTGCATCCAAGTTGGTTCCAACAAGAAATTTCTGCTTTGTACTCCCGGTGATCCTCAGGCAGA
ACAGTTGAAGAGTTCTTCAGAATCTGTAGTCCAGAGAAAGAAGAGAGCAAAGTCACCAGTAAAGAGAAGAAAGGCATCAAAATAG
Protein sequenceShow/hide protein sequence
MRSTITIIPNQPNCRLSPNLRILAAAANRCEAGGGGASAGLVFGTFARFFSRKRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVSGLNSKTHM
KLLLKWMRGRKMLNLFCIQVGSNKKFLLCTPGDPQAEQLKSSSESVVQRKKRAKSPVKRRKASK