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Clc01G01365 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G01365
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGlycine--tRNA ligase beta subunit
Genome locationClcChr01:1140290..1140715
RNA-Seq ExpressionClc01G01365
SyntenyClc01G01365
Gene Ontology termsGO:0016874 - ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7017064.1 hypothetical protein SDJN02_22176, partial [Cucurbita argyrosperma subsp. argyrosperma]9.2e-1277.78Show/hide
Query:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA
        MMLVSVLAEILEEYT +L  VLRQLF+SAPFPRRVRFLILHNLPF +  S  S+
Subjt:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA

XP_008437471.1 PREDICTED: uncharacterized protein LOC103482883 [Cucumis melo]1.8e-1588.89Show/hide
Query:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA
        MMLVSVLAEILEEYT VL+ VLRQLFYSAPFPRRVRFLILHNLPF DRP+ LSA
Subjt:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA

XP_011654666.1 uncharacterized protein LOC105435431 [Cucumis sativus]1.5e-1485.19Show/hide
Query:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA
        MMLVSVLAEILEEYT VL+ VLRQLFYSAPFP RVRFLILHNLPF DRP+ L+A
Subjt:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA

XP_022970120.1 uncharacterized protein LOC111469109 [Cucurbita maxima]9.2e-1277.78Show/hide
Query:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA
        MMLVSVLAEILEEYT +L  VLRQLF+SAPFPRRVRFLILHNLPF +  S  S+
Subjt:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA

XP_038907007.1 uncharacterized protein LOC120092849 [Benincasa hispida]1.8e-1587.04Show/hide
Query:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA
        MMLVSVLAEILEEYTAVL  VLRQLF+SAPFPRR+RFLILHNLPF DRPSG++A
Subjt:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA

TrEMBL top hitse value%identityAlignment
A0A0A0KM75 Uncharacterized protein7.3e-1585.19Show/hide
Query:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA
        MMLVSVLAEILEEYT VL+ VLRQLFYSAPFP RVRFLILHNLPF DRP+ L+A
Subjt:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA

A0A1S3AUP0 uncharacterized protein LOC1034828838.7e-1688.89Show/hide
Query:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA
        MMLVSVLAEILEEYT VL+ VLRQLFYSAPFPRRVRFLILHNLPF DRP+ LSA
Subjt:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA

A0A6J1DZC9 uncharacterized protein LOC1110259992.4e-1067.8Show/hide
Query:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSALGTDG
        MMLVSV+AE+LEEYT +LA VLRQLF SAPFPRRVRFLILHNLP  +  +  + L   G
Subjt:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSALGTDG

A0A6J1EQP1 uncharacterized protein LOC1114357154.5e-1277.78Show/hide
Query:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA
        MMLVSVLAEILEEYT +L  VLRQLF+SAPFPRRVRFLILHNLPF +  S  S+
Subjt:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA

A0A6J1I1Z0 uncharacterized protein LOC1114691094.5e-1277.78Show/hide
Query:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA
        MMLVSVLAEILEEYT +L  VLRQLF+SAPFPRRVRFLILHNLPF +  S  S+
Subjt:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G33055.1 unknown protein1.3e-0850.91Show/hide
Query:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSAL
        M+LV+++AE+++EYT VLA V+  LF  APFPRR+R  IL++LPF    + L  L
Subjt:  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCTAGTATCGGTACTGGCGGAGATTCTAGAGGAGTACACGGCGGTGCTCGCGGCGGTGCTCCGGCAGCTCTTTTATTCCGCGCCATTTCCTCGCCGTGTCCGATT
TCTCATTCTTCATAATCTCCCTTTCCCCGATCGCCCAAGTGGCTTATCGGCATTGGGGACTGACGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGCTAGTATCGGTACTGGCGGAGATTCTAGAGGAGTACACGGCGGTGCTCGCGGCGGTGCTCCGGCAGCTCTTTTATTCCGCGCCATTTCCTCGCCGTGTCCGATT
TCTCATTCTTCATAATCTCCCTTTCCCCGATCGCCCAAGTGGCTTATCGGCATTGGGGACTGACGGCTGAGCGGTCGCCCCAGATTCATCGGCGGATTTTTTTTTTTTTT
TCTTTTTTAATT
Protein sequenceShow/hide protein sequence
MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSALGTDG