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Clc01G01400 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G01400
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionMitochondrial import inner membrane translocase subunit
Genome locationClcChr01:1181522..1185204
RNA-Seq ExpressionClc01G01400
SyntenyClc01G01400
Gene Ontology termsGO:0045039 - protein insertion into mitochondrial inner membrane (biological process)
GO:0005743 - mitochondrial inner membrane (cellular component)
GO:0042719 - mitochondrial intermembrane space protein transporter complex (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004217 - Tim10-like
IPR035427 - Tim10-like domain superfamily
IPR039238 - Mitochondrial import inner membrane translocase subunit Tim8/13


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145880.1 mitochondrial import inner membrane translocase subunit Tim13 [Cucumis sativus]2.5e-3795.4Show/hide
Query:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH
        MD FSSPS+GSS QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE SCISRCMERYIEATSIVSRALFKTPH
Subjt:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH

XP_022159838.1 mitochondrial import inner membrane translocase subunit Tim13 [Momordica charantia]4.6e-3691.95Show/hide
Query:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH
        MD FSSPS+G SSQFSA+EF+DQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE SCISRCMERYIEATSIVS+ALFKTPH
Subjt:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH

XP_022929052.1 mitochondrial import inner membrane translocase subunit TIM13-like isoform X6 [Cucurbita moschata]7.1e-3794.25Show/hide
Query:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH
        MD FSSPS+GSSSQFS NEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE SCISRCMERYIEAT IVSRALFKTPH
Subjt:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH

XP_023520535.1 mitochondrial import inner membrane translocase subunit Tim13 [Cucurbita pepo subsp. pepo]6.0e-3693.1Show/hide
Query:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH
        MD FSSPS+GSSSQFS NEFRDQLKTQLAQAYAEEFLETLRVKCF KCITKPGSSLSGSE SCISRCMERYIEAT IVSRALFKTPH
Subjt:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH

XP_038906948.1 mitochondrial import inner membrane translocase subunit TIM13 [Benincasa hispida]6.5e-3896.55Show/hide
Query:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH
        MD FSSPS+GSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE SCISRCMERYIEATSIVSRALFKTPH
Subjt:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH

TrEMBL top hitse value%identityAlignment
A0A0A0KK66 Mitochondrial import inner membrane translocase subunit1.2e-3795.4Show/hide
Query:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH
        MD FSSPS+GSS QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE SCISRCMERYIEATSIVSRALFKTPH
Subjt:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH

A0A1S3AUN2 Mitochondrial import inner membrane translocase subunit1.2e-3795.4Show/hide
Query:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH
        MD FSSPS+GSS QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE SCISRCMERYIEATSIVSRALFKTPH
Subjt:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH

A0A6J1DZZ6 Mitochondrial import inner membrane translocase subunit2.2e-3691.95Show/hide
Query:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH
        MD FSSPS+G SSQFSA+EF+DQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE SCISRCMERYIEATSIVS+ALFKTPH
Subjt:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH

A0A6J1ELP2 Mitochondrial import inner membrane translocase subunit3.5e-3794.25Show/hide
Query:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH
        MD FSSPS+GSSSQFS NEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE SCISRCMERYIEAT IVSRALFKTPH
Subjt:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH

A0A6J1I4K9 Mitochondrial import inner membrane translocase subunit3.5e-3794.25Show/hide
Query:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH
        MD FSSPS+GSSSQFS NEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE SCISRCMERYIEAT IVSRALFKTPH
Subjt:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH

SwissProt top hitse value%identityAlignment
P62075 Mitochondrial import inner membrane translocase subunit Tim133.1e-1153.33Show/hide
Query:  DQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRA
        +Q+K Q+A A A+E L+ +  KCF KCI KPG SL  SE  CI+ CM+RY++A + VSRA
Subjt:  DQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRA

Q6DGJ3 Mitochondrial import inner membrane translocase subunit Tim134.8e-1248.19Show/hide
Query:  MDPFSSP-STGSSS-QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRA
        M+ F S  S+GSSS +       +Q+K Q+A A A+E L+ +  KCF KCI KPGS+L  SE  CI+ CM+RY++A + VSRA
Subjt:  MDPFSSP-STGSSS-QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRA

Q8AVK1 Mitochondrial import inner membrane translocase subunit Tim13-B6.3e-1245.24Show/hide
Query:  MDPFSSPST---GSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRA
        MD F S  +    SS +       +Q+K Q+A A A+E L+ +  KCF KCI KPG SL  SE  C++ CM+RY++A +IVSRA
Subjt:  MDPFSSPST---GSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRA

Q9XGY5 Mitochondrial import inner membrane translocase subunit Tim134.7e-2369.41Show/hide
Query:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKT
        MD FSS S+GS     A    DQ+K QLAQAYA+EFLET+  KCF KC+TKPGSSLSGSE SCISRC++RYIEAT IVSRALF +
Subjt:  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKT

Q9XH48 Mitochondrial import inner membrane translocase subunit TIM136.5e-2567.86Show/hide
Query:  MDPFSSPST-GSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALF
        MD +SSP   GS S  S     + +KTQLAQAYAEE +ETLR KCFDKC+TKPGSSL GSE SCISRC+ERY+EAT+I+SR+LF
Subjt:  MDPFSSPST-GSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALF

Arabidopsis top hitse value%identityAlignment
AT1G61570.1 translocase of the inner mitochondrial membrane 134.6e-2667.86Show/hide
Query:  MDPFSSPST-GSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALF
        MD +SSP   GS S  S     + +KTQLAQAYAEE +ETLR KCFDKC+TKPGSSL GSE SCISRC+ERY+EAT+I+SR+LF
Subjt:  MDPFSSPST-GSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALF

AT5G50810.1 translocase inner membrane subunit 85.3e-0636.21Show/hide
Query:  LKTQLAQAYAEEFLETLRVKCFDKCITK-PGSSLSGSEGSCISRCMERYIEATSIVSR
        L  +  +A   E +  +   C+DKCIT  PGS  S SE SC++ C +RY++ + I+ +
Subjt:  LKTQLAQAYAEEFLETLRVKCFDKCITK-PGSSLSGSEGSCISRCMERYIEATSIVSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCATTTTCATCACCTTCAACCGGTTCTTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAGTTTCT
TGAGACCTTAAGAGTGAAGTGCTTTGACAAGTGCATCACCAAGCCAGGGTCAAGCCTAAGTGGAAGTGAGGGCAGTTGCATCTCTAGGTGCATGGAGCGCTATATTGAGG
CCACCAGCATCGTCAGTAGAGCCCTCTTTAAGACACCACACTGA
mRNA sequenceShow/hide mRNA sequence
TTATAATAAAACTAAAGGTAATATTATAAATTTTAGATTAAATTACAAATTTAAACTTATGATTTATAAAAGTTAAAATTTAATTTGTATGGTTGAATAAAATTCTTATT
TTATAAAAATACTAAATTTTAATTTTTTCCAAATTATAGTAACTAAATTTGCTATTTAACCTAATTTTTGGATATATTTGAAATAAAGAGTCCATGAGTATTTTCTATAA
TTTAGTAAATAAATAAATGAAAATAAATGAGCAAATTGTGAATTGGCAAGGTAAAGGTTGAAGCACAGCAAAGGCGCGCCCTAATTGCATTGCCATAGCCATCGCGTTCG
CCGCCCTTGAACACAAAATTCAGCTCTACGGCACTGCGCAAGCGAATACAGACAGGGGCAGTGGTTTATAGGGTTTTGCAAGTACCCAACAAATGGATCCATTTTCATCA
CCTTCAACCGGTTCTTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAGTTTCTTGAGACCTTAAGAGTGAA
GTGCTTTGACAAGTGCATCACCAAGCCAGGGTCAAGCCTAAGTGGAAGTGAGGGCAGTTGCATCTCTAGGTGCATGGAGCGCTATATTGAGGCCACCAGCATCGTCAGTA
GAGCCCTCTTTAAGACACCACACTGAATTCACAGGTTTTCCTGAGACATTATGCCGCCGAGGTATCTTCAGCAACCTACATTTTGTTCGATATTTATTTTCCAGCGCTAA
AATCTTTCTTGAGGAGACATGCTTTTGATTTGTGCCCCATAGATAATATTGGTATCATGTGCCCGATTCGCTTACATGTGAACTTTGGGTCAATTAAACTCTCATTTCTT
CTGATTTAACATGCGTCAATTGGTGTTATTACCATGTGTGGATTGAACCAAGCTGTTACTATTGGTTGGATAGAATAGAAGAATGCTACACTGATAGTTGCACTGATAGT
AAATTTCCTATGGTTCTTTAGAGATTAGGATGACATATTTAGACTAGCGCCCCC
Protein sequenceShow/hide protein sequence
MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH