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Clc01G01430 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G01430
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRING-H2 finger protein ATL46-like
Genome locationClcChr01:1213379..1215996
RNA-Seq ExpressionClc01G01430
SyntenyClc01G01430
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7035527.1 hypothetical protein SDJN02_02323, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-4271.21Show/hide
Query:  MGFLYFAINTHLRSQILHFFTTILLQLKLLAAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAADLQAKIKKSLPIVACRDFVAKQGMAIGG
        MGFL FAIN    SQILH FT ILLQ KLLAAHFGL+K SPE+ A+SPFERPTSYV LTEG  PSLVT+PA DLQA+IK SLPI+   DFV KQG     
Subjt:  MGFLYFAINTHLRSQILHFFTTILLQLKLLAAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAADLQAKIKKSLPIVACRDFVAKQGMAIGG

Query:  TEDGEEDRNCTICLCEMERSETMRELPNCCHI
         +  EE+R CTICLCEMERSETMREL NCCH+
Subjt:  TEDGEEDRNCTICLCEMERSETMRELPNCCHI

XP_022996076.1 RING-H2 finger protein ATL46-like [Cucurbita maxima]6.2e-4170.68Show/hide
Query:  MGFLYFAINTHLRSQILH-FFTTILLQLKLLAAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAADLQAKIKKSLPIVACRDFVAKQGMAIG
        MGFL+FAIN    SQILH  FT ILLQ KLLAAHFGL+K SPE  ADSPFERPTSYV LTEG  PSLVT+PA DLQ +IK SLPI+   DFV KQG    
Subjt:  MGFLYFAINTHLRSQILH-FFTTILLQLKLLAAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAADLQAKIKKSLPIVACRDFVAKQGMAIG

Query:  GTEDGEEDRNCTICLCEMERSETMRELPNCCHI
          +  EE+R CTICLCEMERSETMREL NCCH+
Subjt:  GTEDGEEDRNCTICLCEMERSETMRELPNCCHI

XP_023520502.1 RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo]1.7e-4371.97Show/hide
Query:  MGFLYFAINTHLRSQILHFFTTILLQLKLLAAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAADLQAKIKKSLPIVACRDFVAKQGMAIGG
        MGF  FAIN H   QILHFFT ILL LKLLAA FGLLK SPEH+ADSPF+ PTSY+FLT+ PCPSLVT+PAADLQA+IK SLPIV   DF AKQG+  GG
Subjt:  MGFLYFAINTHLRSQILHFFTTILLQLKLLAAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAADLQAKIKKSLPIVACRDFVAKQGMAIGG

Query:  TEDGEEDRNCTICLCEMERSETMRELPNCCHI
         +  EE+R CTICL EMERSE MREL NC H+
Subjt:  TEDGEEDRNCTICLCEMERSETMRELPNCCHI

XP_023533023.1 RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo]1.3e-4371.97Show/hide
Query:  MGFLYFAINTHLRSQILHFFTTILLQLKLLAAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAADLQAKIKKSLPIVACRDFVAKQGMAIGG
        MGFL+FAIN    SQILH FT ILLQ KLLAAHFGL+K SPEH A+SPFERPTSYV LTEG  PSLVT+PA DLQA+IK SLPI+   DFV KQG     
Subjt:  MGFLYFAINTHLRSQILHFFTTILLQLKLLAAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAADLQAKIKKSLPIVACRDFVAKQGMAIGG

Query:  TEDGEEDRNCTICLCEMERSETMRELPNCCHI
         +  EE+R CTICLCEMERSETMREL NCCH+
Subjt:  TEDGEEDRNCTICLCEMERSETMRELPNCCHI

XP_038907243.1 RING-H2 finger protein ATL2-like [Benincasa hispida]8.9e-5682.58Show/hide
Query:  MGFLYFAINTHLRSQILHFFTTILLQLKLLAAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAADLQAKIKKSLPIVACRDFVAKQGMAIGG
        MGFLYF+IN HL SQILHFFTTILLQLKLLAAHF LLKLSPEHNADSPF+RPTS+VFLTEGPC SLVT+PAADLQ +IKKSLPIVA RDF+AKQGM  G 
Subjt:  MGFLYFAINTHLRSQILHFFTTILLQLKLLAAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAADLQAKIKKSLPIVACRDFVAKQGMAIGG

Query:  TEDGEEDRNCTICLCEMERSETMRELPNCCHI
         E+ EE+R CT+CLCEMERSE+MRELPNCCH+
Subjt:  TEDGEEDRNCTICLCEMERSETMRELPNCCHI

TrEMBL top hitse value%identityAlignment
A0A2Z7BRP5 RING-type domain-containing protein1.8e-0932.84Show/hide
Query:  MGFLYFAINTHLRSQI--LHFFTTILLQLKLLAAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAADLQAKIKKSLPIVACRDFVAKQGMAI
        MGFL+ AI   L +    L   T +     +     G+ K  PE   + P  R  +Y+F+ +G  PSLV IP   + A IKK +PI+  RD   +    +
Subjt:  MGFLYFAINTHLRSQI--LHFFTTILLQLKLLAAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAADLQAKIKKSLPIVACRDFVAKQGMAI

Query:  GGTEDGEEDRNCTICLCEMERSETMRELPNCCHI
        G      +   CT+CL  +  S+ +REL NC H+
Subjt:  GGTEDGEEDRNCTICLCEMERSETMRELPNCCHI

A0A5J5A3P6 RING-type domain-containing protein8.8e-0937.04Show/hide
Query:  LQLKLLAAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAADLQAKIKKSLPIVACRDFVAKQGMAIGGTEDGEEDRNCTICLCEMERSETMR
        L + +   H GLL  +PE    S  E  T YV + +G  PSLV IP   + A IKK LP++   D++ ++ +     ++ EE++ C++CL  +E S  +R
Subjt:  LQLKLLAAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAADLQAKIKKSLPIVACRDFVAKQGMAIGGTEDGEEDRNCTICLCEMERSETMR

Query:  ELPNCCHI
        EL NCCH+
Subjt:  ELPNCCHI

A0A6I9TKD6 RING-H2 finger protein ATL80-like1.5e-0837.23Show/hide
Query:  MGFLYFAINTHLRSQILHFFTTILLQLKLL----AAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAADLQAKIKKSLPIVACRDFV-AKQG
        MGFLY AI       I+ FF  I    + L     A  GL K  PE   +S  +   +Y+ + +G  PSLV IP   + A IKK +P V  +DF+  +QG
Subjt:  MGFLYFAINTHLRSQILHFFTTILLQLKLL----AAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAADLQAKIKKSLPIVACRDFV-AKQG

Query:  MAIGGTEDGEEDRNCTICLCEMERSETMRELPNCCHI
           G  E+  E   C+ICL  +E  + +REL NC H+
Subjt:  MAIGGTEDGEEDRNCTICLCEMERSETMRELPNCCHI

A0A6J1E009 RING-H2 finger protein ATL2-like6.7e-3359.42Show/hide
Query:  MGFLYFAINTHLRSQILHFFTTILLQLKLLAAHFGLLKLSPE--HNADSPFERPTSYVFLTEGPCPSLVTIPAADLQAKIKKSLPIVACRDFVAKQGMAI
        MGFLYFAIN H  SQILHFFT I  +LK L  + G+LK  P+   +AD   +RPTSYVF+TEG CPSLVT+PA DLQA+IKKSLPIV   DF AK  +  
Subjt:  MGFLYFAINTHLRSQILHFFTTILLQLKLLAAHFGLLKLSPE--HNADSPFERPTSYVFLTEGPCPSLVTIPAADLQAKIKKSLPIVACRDFVAKQGMAI

Query:  ----GGTEDGEEDRNCTICLCEMERSETMRELPNCCHI
               E+ EE   CTICL +ME+SE MREL NCCH+
Subjt:  ----GGTEDGEEDRNCTICLCEMERSETMRELPNCCHI

A0A6J1K3P6 RING-H2 finger protein ATL46-like3.0e-4170.68Show/hide
Query:  MGFLYFAINTHLRSQILH-FFTTILLQLKLLAAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAADLQAKIKKSLPIVACRDFVAKQGMAIG
        MGFL+FAIN    SQILH  FT ILLQ KLLAAHFGL+K SPE  ADSPFERPTSYV LTEG  PSLVT+PA DLQ +IK SLPI+   DFV KQG    
Subjt:  MGFLYFAINTHLRSQILH-FFTTILLQLKLLAAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAADLQAKIKKSLPIVACRDFVAKQGMAIG

Query:  GTEDGEEDRNCTICLCEMERSETMRELPNCCHI
          +  EE+R CTICLCEMERSETMREL NCCH+
Subjt:  GTEDGEEDRNCTICLCEMERSETMRELPNCCHI

SwissProt top hitse value%identityAlignment
Q8L9T5 RING-H2 finger protein ATL23.3e-0530.58Show/hide
Query:  LRSQILHFFTTILLQLKLLAAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAA-DLQAKIKKSLPIVACRDFVAKQGMAIGGTEDGEEDRNC
        L + ++ FF  IL+    L A + LL+    H       R  + VF T  P  +  ++ A+  L   + KSLP+    D            E  ++   C
Subjt:  LRSQILHFFTTILLQLKLLAAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAA-DLQAKIKKSLPIVACRDFVAKQGMAIGGTEDGEEDRNC

Query:  TICLCEMERSETMRELPNCCH
         +CL E E SET R LPNC H
Subjt:  TICLCEMERSETMRELPNCCH

Arabidopsis top hitse value%identityAlignment
AT2G34990.1 RING/U-box superfamily protein5.0e-0440.48Show/hide
Query:  VAKQGMAIGGTEDGEEDRNCTICLCEMERSETMRELPNCCHI
        V ++ + IGG E       C +C+CE E  ET+R +P CCH+
Subjt:  VAKQGMAIGGTEDGEEDRNCTICLCEMERSETMRELPNCCHI

AT3G16720.1 TOXICOS EN LEVADURA 22.4e-0630.58Show/hide
Query:  LRSQILHFFTTILLQLKLLAAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAA-DLQAKIKKSLPIVACRDFVAKQGMAIGGTEDGEEDRNC
        L + ++ FF  IL+    L A + LL+    H       R  + VF T  P  +  ++ A+  L   + KSLP+    D            E  ++   C
Subjt:  LRSQILHFFTTILLQLKLLAAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAA-DLQAKIKKSLPIVACRDFVAKQGMAIGGTEDGEEDRNC

Query:  TICLCEMERSETMRELPNCCH
         +CL E E SET R LPNC H
Subjt:  TICLCEMERSETMRELPNCCH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTTCCTCTATTTCGCCATTAACACCCACTTACGCTCTCAAATCCTCCATTTCTTCACCACAATCCTCCTCCAGTTGAAGCTTCTCGCCGCCCACTTTGGCCTCCT
AAAGCTCTCGCCGGAGCACAACGCTGATTCTCCCTTCGAGCGCCCGACTAGCTACGTCTTCCTCACCGAAGGCCCCTGCCCCTCGCTGGTCACCATTCCGGCCGCCGATT
TGCAGGCCAAGATCAAGAAGAGTCTTCCGATCGTTGCGTGTAGGGATTTTGTTGCGAAACAGGGGATGGCAATTGGGGGAACTGAAGATGGCGAAGAGGATCGGAATTGT
ACGATCTGTTTGTGTGAAATGGAGAGATCGGAGACGATGAGAGAGCTCCCAAATTGCTGCCATATCCCTGCTTTTGCCCGCCGGAGAAGGCGATGGGTTCCGATTCTTCA
GGTGATCGTCAGATTCAGCCACCGCCGCTGGGACGGACGCCGGCAACTCTCCTCCGCTTCTATGTCCGAAAGTGAACATTGGCATGGTAGCAGTTGTTGGAAGAGGCTAG
AGATGGTGGTTGGTAGTGGCTGTCGGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGTTCCTCTATTTCGCCATTAACACCCACTTACGCTCTCAAATCCTCCATTTCTTCACCACAATCCTCCTCCAGTTGAAGCTTCTCGCCGCCCACTTTGGCCTCCT
AAAGCTCTCGCCGGAGCACAACGCTGATTCTCCCTTCGAGCGCCCGACTAGCTACGTCTTCCTCACCGAAGGCCCCTGCCCCTCGCTGGTCACCATTCCGGCCGCCGATT
TGCAGGCCAAGATCAAGAAGAGTCTTCCGATCGTTGCGTGTAGGGATTTTGTTGCGAAACAGGGGATGGCAATTGGGGGAACTGAAGATGGCGAAGAGGATCGGAATTGT
ACGATCTGTTTGTGTGAAATGGAGAGATCGGAGACGATGAGAGAGCTCCCAAATTGCTGCCATATCCCTGCTTTTGCCCGCCGGAGAAGGCGATGGGTTCCGATTCTTCA
GGTGATCGTCAGATTCAGCCACCGCCGCTGGGACGGACGCCGGCAACTCTCCTCCGCTTCTATGTCCGAAAGTGAACATTGGCATGGTAGCAGTTGTTGGAAGAGGCTAG
AGATGGTGGTTGGTAGTGGCTGTCGGAAGTAG
Protein sequenceShow/hide protein sequence
MGFLYFAINTHLRSQILHFFTTILLQLKLLAAHFGLLKLSPEHNADSPFERPTSYVFLTEGPCPSLVTIPAADLQAKIKKSLPIVACRDFVAKQGMAIGGTEDGEEDRNC
TICLCEMERSETMRELPNCCHIPAFARRRRRWVPILQVIVRFSHRRWDGRRQLSSASMSESEHWHGSSCWKRLEMVVGSGCRK