; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G02080 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G02080
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionglycine-rich cell wall structural protein 1-like
Genome locationClcChr01:1843014..1844138
RNA-Seq ExpressionClc01G02080
SyntenyClc01G02080
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042689.1 uncharacterized protein E6C27_scaffold44G001870 [Cucumis melo var. makuwa]2.2e-2375Show/hide
Query:  MASLQCNKPADHEYSQHQQKNDQQH-HHCFGGHVSDKIKGVF-KGHHHGQAPPAVAPVHHSANANHCKPAGSKKKKEHHKNKEG
        MA  QC KPADH + QHQQK+DQQH HHCFGGHVSDKIKGVF KGHHH QA PA   VHHSAN +HCK +GSKKKKEH   KEG
Subjt:  MASLQCNKPADHEYSQHQQKNDQQH-HHCFGGHVSDKIKGVF-KGHHHGQAPPAVAPVHHSANANHCKPAGSKKKKEHHKNKEG

XP_008437383.1 PREDICTED: uncharacterized protein LOC103482815 [Cucumis melo]1.7e-3676.07Show/hide
Query:  MASLQCNKPADHEYSQHQQKNDQQH-HHCFGGHVSDKIKGVF-KGHHHGQAPPAVAPVHHSANANHCKPAGSKKKKEHHKNKEGGLFHKIKDAFSDHSSD
        MA  QC KPADH + QHQQK+DQQH HHCFGGHVSDKIKGVF KGHHH QA PA   VHHSAN +HCK +GSKKKKEH   KEGGL HKIK+AFSDHSSD
Subjt:  MASLQCNKPADHEYSQHQQKNDQQH-HHCFGGHVSDKIKGVF-KGHHHGQAPPAVAPVHHSANANHCKPAGSKKKKEHHKNKEGGLFHKIKDAFSDHSSD

Query:  SSSDSDNEGHKANHNKK
         SSDS+NE HK +HNKK
Subjt:  SSSDSDNEGHKANHNKK

XP_022146004.1 uncharacterized protein LOC111015315 [Momordica charantia]5.2e-2570.09Show/hide
Query:  MASLQCNKPADHEYSQHQQKNDQQHHHCFGGHVSDKIKGVFKGH-HHGQAPPAVAPVHHSANAN-HCKPAGSKKKKEHHKNKEGGLFHKIKDAFSDHSSD
        MASLQC+KPAD ++SQ+ QK+DQ   HCF GHVSDKIKGVFKGH HHGQAP A AP HHS N N +   + S K+KE HKNK+G L HKIKDAFSDHSSD
Subjt:  MASLQCNKPADHEYSQHQQKNDQQHHHCFGGHVSDKIKGVFKGH-HHGQAPPAVAPVHHSANAN-HCKPAGSKKKKEHHKNKEGGLFHKIKDAFSDHSSD

Query:  SSSDSDNEGHKANHNKK
         SSDSDNEGHKA+   K
Subjt:  SSSDSDNEGHKANHNKK

XP_028774818.1 uncharacterized protein LOC114731741 [Prosopis alba]1.0e-0437.07Show/hide
Query:  MASLQCNKPADHEYSQHQQKNDQQHHHCFGGHVSDKIKGVFKGHHHGQAPPAVAPVHHSANANHCKPAGSKKKKEHHKNKEGGLFHKIKDAFSDHSSDSS
        MAS+QC++  +    Q QQ+            +  K+  +FKGHHH   P        ++N N    +   ++KEH KN    +F KIKD  S HSSDSS
Subjt:  MASLQCNKPADHEYSQHQQKNDQQHHHCFGGHVSDKIKGVFKGHHHGQAPPAVAPVHHSANANHCKPAGSKKKKEHHKNKEGGLFHKIKDAFSDHSSDSS

Query:  SDSDNEGHKANHNKKN
        SDSD++G    H +KN
Subjt:  SDSDNEGHKANHNKKN

XP_038875375.1 uncharacterized protein LOC120067846 [Benincasa hispida]1.0e-4485.34Show/hide
Query:  MASLQCNKPADHEYSQHQQKNDQQHHHCFGGHVSDKIKGVFKGHHHGQAPPAVAPVHHSANANHCKPAGSKKKKEHHKNKEGGLFHKIKDAFSDHSSDSS
        MASLQCNKPADH+    QQK+DQQHHHCFGGHVSDKIKGVFKGHHHGQAP A APVHHSANA+HCKP GSKKKKEHHKNKEGGL HKIKDAFSDHSSD S
Subjt:  MASLQCNKPADHEYSQHQQKNDQQHHHCFGGHVSDKIKGVFKGHHHGQAPPAVAPVHHSANANHCKPAGSKKKKEHHKNKEGGLFHKIKDAFSDHSSDSS

Query:  SDSDNEGHKANHNKKN
        SDS+NE  K +HNKKN
Subjt:  SDSDNEGHKANHNKKN

TrEMBL top hitse value%identityAlignment
A0A1S3AUH3 uncharacterized protein LOC1034828158.4e-3776.07Show/hide
Query:  MASLQCNKPADHEYSQHQQKNDQQH-HHCFGGHVSDKIKGVF-KGHHHGQAPPAVAPVHHSANANHCKPAGSKKKKEHHKNKEGGLFHKIKDAFSDHSSD
        MA  QC KPADH + QHQQK+DQQH HHCFGGHVSDKIKGVF KGHHH QA PA   VHHSAN +HCK +GSKKKKEH   KEGGL HKIK+AFSDHSSD
Subjt:  MASLQCNKPADHEYSQHQQKNDQQH-HHCFGGHVSDKIKGVF-KGHHHGQAPPAVAPVHHSANANHCKPAGSKKKKEHHKNKEGGLFHKIKDAFSDHSSD

Query:  SSSDSDNEGHKANHNKK
         SSDS+NE HK +HNKK
Subjt:  SSSDSDNEGHKANHNKK

A0A5A7TMV4 Uncharacterized protein1.1e-2375Show/hide
Query:  MASLQCNKPADHEYSQHQQKNDQQH-HHCFGGHVSDKIKGVF-KGHHHGQAPPAVAPVHHSANANHCKPAGSKKKKEHHKNKEG
        MA  QC KPADH + QHQQK+DQQH HHCFGGHVSDKIKGVF KGHHH QA PA   VHHSAN +HCK +GSKKKKEH   KEG
Subjt:  MASLQCNKPADHEYSQHQQKNDQQH-HHCFGGHVSDKIKGVF-KGHHHGQAPPAVAPVHHSANANHCKPAGSKKKKEHHKNKEG

A0A6J1CWW2 uncharacterized protein LOC1110153152.5e-2570.09Show/hide
Query:  MASLQCNKPADHEYSQHQQKNDQQHHHCFGGHVSDKIKGVFKGH-HHGQAPPAVAPVHHSANAN-HCKPAGSKKKKEHHKNKEGGLFHKIKDAFSDHSSD
        MASLQC+KPAD ++SQ+ QK+DQ   HCF GHVSDKIKGVFKGH HHGQAP A AP HHS N N +   + S K+KE HKNK+G L HKIKDAFSDHSSD
Subjt:  MASLQCNKPADHEYSQHQQKNDQQHHHCFGGHVSDKIKGVFKGH-HHGQAPPAVAPVHHSANAN-HCKPAGSKKKKEHHKNKEGGLFHKIKDAFSDHSSD

Query:  SSSDSDNEGHKANHNKK
         SSDSDNEGHKA+   K
Subjt:  SSSDSDNEGHKANHNKK

A0A6J1H399 glycine-rich cell wall structural protein 1-like1.4e-0448.35Show/hide
Query:  HHCFGGHVSDKIKGVFKGHHH--------GQAPPAVAPVHH----SANANHCKPAGSKKKKEHHKNKEGGLFHKIKDAFSDHSSDSSSDSD
        H   GGH      G   GH H        G   PA   V H    S N  HCK AG  +KK HHKNKEGG  +KIKDAFSDHS +S SD D
Subjt:  HHCFGGHVSDKIKGVFKGHHH--------GQAPPAVAPVHH----SANANHCKPAGSKKKKEHHKNKEGGLFHKIKDAFSDHSSDSSSDSD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCCCTACAATGCAACAAACCAGCTGATCATGAGTACAGCCAGCACCAGCAGAAGAATGACCAACAACATCACCATTGCTTCGGCGGCCACGTCTCCGACAAGAT
CAAAGGTGTCTTCAAAGGCCACCATCACGGCCAGGCTCCACCAGCAGTGGCGCCGGTGCACCACTCTGCCAATGCTAACCACTGCAAGCCAGCTGGGTCAAAGAAGAAGA
AGGAACACCACAAGAATAAAGAAGGAGGTTTGTTTCATAAGATCAAGGATGCCTTTTCTGACCACAGCAGTGACAGCAGCAGTGACAGTGATAATGAAGGTCACAAAGCC
AATCACAACAAGAAGAACGTAATGTCCAGCTTTCACGAGTTATGCTATGGTGTTTGTATTTACTCTCGTAGTGTGATACTGAAAGGAGAGAAGAAAGGTGAATGGATTGA
AGGACCGGTGAATGCCTCTAAACTACCTCTACTATTCAGAATTTGA
mRNA sequenceShow/hide mRNA sequence
GCAGGCAGCTCCTTCCAAACATCATTTAAAACTCTCAACGAAAAGCTTCAATTTTTACTGCATCAATGGCATCCCTACAATGCAACAAACCAGCTGATCATGAGTACAGC
CAGCACCAGCAGAAGAATGACCAACAACATCACCATTGCTTCGGCGGCCACGTCTCCGACAAGATCAAAGGTGTCTTCAAAGGCCACCATCACGGCCAGGCTCCACCAGC
AGTGGCGCCGGTGCACCACTCTGCCAATGCTAACCACTGCAAGCCAGCTGGGTCAAAGAAGAAGAAGGAACACCACAAGAATAAAGAAGGAGGTTTGTTTCATAAGATCA
AGGATGCCTTTTCTGACCACAGCAGTGACAGCAGCAGTGACAGTGATAATGAAGGTCACAAAGCCAATCACAACAAGAAGAACGTAATGTCCAGCTTTCACGAGTTATGC
TATGGTGTTTGTATTTACTCTCGTAGTGTGATACTGAAAGGAGAGAAGAAAGGTGAATGGATTGAAGGACCGGTGAATGCCTCTAAACTACCTCTACTATTCAGAATTTG
AGTGAAGTAAAAATAAAGATACACGATGTAAAAATAAAGATGATTATTTATGCGACTTCTACTGTACCATCCTATTTTTCCATATTTGAAATAAAACTTCTCTATATAAT
GTAATTCAACGGAATCATTTCAAATACAATTCAGCTTTTCAA
Protein sequenceShow/hide protein sequence
MASLQCNKPADHEYSQHQQKNDQQHHHCFGGHVSDKIKGVFKGHHHGQAPPAVAPVHHSANANHCKPAGSKKKKEHHKNKEGGLFHKIKDAFSDHSSDSSSDSDNEGHKA
NHNKKNVMSSFHELCYGVCIYSRSVILKGEKKGEWIEGPVNASKLPLLFRI