; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G02090 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G02090
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionMyb-like domain-containing protein
Genome locationClcChr01:1846528..1848317
RNA-Seq ExpressionClc01G02090
SyntenyClc01G02090
Gene Ontology termsGO:0009913 - epidermal cell differentiation (biological process)
GO:0010063 - positive regulation of trichoblast fate specification (biological process)
GO:0010376 - stomatal complex formation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146038.1 transcription factor CPC-like isoform X2 [Momordica charantia]2.9e-2773.4Show/hide
Query:  MESEAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHGS
        ME EAKK  KQP+KQSKSRNSSSE              +VTSLEW+++QISEQEEDLI RMH+LVGDRWDLIAGRIPGRTAVEIERFWILKH S
Subjt:  MESEAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHGS

XP_030467108.1 MYB-like transcription factor ETC3 [Syzygium oleosum]3.2e-1878.18Show/hide
Query:  KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHG
        +V+S+EWE + ++EQEEDLIHRMHRLVG+RWDLIAGRIPGR+A EIERFWI+KHG
Subjt:  KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHG

XP_038680402.1 transcription factor CPC-like [Tripterygium wilfordii]1.3e-1959.52Show/hide
Query:  KQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHG
        K+PRKQ+K+R+++SE              +V+S+EWE ++++EQEEDLI+RMHRLVGD+WDLIAGRIPGR A EIERFWI++HG
Subjt:  KQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHG

XP_038725413.1 transcription factor CPC-like [Tripterygium wilfordii]1.9e-1858.33Show/hide
Query:  KQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHG
        K+PRKQ+K+R+++SE              +V+S+EWE V+++EQEEDLI+RM+RLVGD+WDLIAGRIPGR   EIERFWI++HG
Subjt:  KQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHG

XP_038874276.1 transcription factor CPC-like [Benincasa hispida]1.8e-2976.6Show/hide
Query:  MESEAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHGS
        ME EAKKTAKQP+KQSK R S+SE              +VTSLEWEV+QIS+QEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHGS
Subjt:  MESEAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHGS

TrEMBL top hitse value%identityAlignment
A0A061G715 Homeodomain-like superfamily protein7.7e-1855.95Show/hide
Query:  KQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHG
        ++P+KQ+K   S+SE              +V+S+EWE ++++EQEEDL++R++RLVGDRWDLIAGRIPGRTA EIERFWI++HG
Subjt:  KQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHG

A0A2I4E811 transcription factor CPC-like1.0e-1755.95Show/hide
Query:  KQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHG
        K+PRKQ+KS  SS+               +V+S+EWE ++++EQEEDLI RM++LVGDRWDLIAGR+PGR   EIERFWI++HG
Subjt:  KQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHG

A0A4V6A0D9 Transcription factor TRY-like3.5e-1860.24Show/hide
Query:  KQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH
        ++ RKQ+K  NS SE              +V+S+EWE + +SEQEEDLIHRM+RLVG+RWDLIAGRIPGR A EIERFWI+KH
Subjt:  KQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH

A0A654F2G6 SANT domain-containing protein1.3e-1754.44Show/hide
Query:  EAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHG
        +A+K  K+ R+QSK++ S SE              +V+S+EWE V++SE+EEDLI RM++LVGDRW+LIAGRIPGRT  EIER+W++KHG
Subjt:  EAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHG

A0A6J1CXI2 transcription factor CPC-like isoform X21.4e-2773.4Show/hide
Query:  MESEAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHGS
        ME EAKK  KQP+KQSKSRNSSSE              +VTSLEW+++QISEQEEDLI RMH+LVGDRWDLIAGRIPGRTAVEIERFWILKH S
Subjt:  MESEAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHGS

SwissProt top hitse value%identityAlignment
B3H4X8 MYB-like transcription factor TCL26.9e-1664.81Show/hide
Query:  KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH
        +V S++WE + ++EQEEDLI RMHRLVGDRWDLIAGR+ GR A +IER+WI+++
Subjt:  KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH

O22059 Transcription factor CPC3.6e-2054.44Show/hide
Query:  EAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHG
        +A+K  K+ R+QSK++ S SE              +V+S+EWE V++SE+EEDLI RM++LVGDRW+LIAGRIPGRT  EIER+W++KHG
Subjt:  EAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHG

Q8GV05 Transcription factor TRY1.1e-1666.67Show/hide
Query:  KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH
        +V+S+EWE + ++EQEEDLI RM+RLVGDRWDLIAGR+PGR   EIER+WI+++
Subjt:  KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH

Q9LNI5 MYB-like transcription factor ETC16.3e-1768.52Show/hide
Query:  KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH
        +V+SLEWE + ++++EEDLI RM++LVG+RWDLIAGRIPGRTA EIERFW++K+
Subjt:  KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH

Q9M157 MYB-like transcription factor ETC31.1e-1854.65Show/hide
Query:  KTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH
        +  KQP+  S   +SS E               V+SLEWEVV +S++EEDL+ RMH+LVGDRW+LIAGRIPGRTA EIERFW++K+
Subjt:  KTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH

Arabidopsis top hitse value%identityAlignment
AT1G01380.1 Homeodomain-like superfamily protein4.5e-1868.52Show/hide
Query:  KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH
        +V+SLEWE + ++++EEDLI RM++LVG+RWDLIAGRIPGRTA EIERFW++K+
Subjt:  KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH

AT2G46410.1 Homeodomain-like superfamily protein2.5e-2154.44Show/hide
Query:  EAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHG
        +A+K  K+ R+QSK++ S SE              +V+S+EWE V++SE+EEDLI RM++LVGDRW+LIAGRIPGRT  EIER+W++KHG
Subjt:  EAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHG

AT4G01060.1 CAPRICE-like MYB33.6e-2056.98Show/hide
Query:  KTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH
        +  KQP K +    SSSEG             +V+SLEWEVV +S++EEDL+ RMH+LVGDRW+LIAGRIPGRTA EIERFW++K+
Subjt:  KTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH

AT4G01060.2 CAPRICE-like MYB34.8e-2074.07Show/hide
Query:  KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH
        +V+SLEWEVV +S++EEDL+ RMH+LVGDRW+LIAGRIPGRTA EIERFW++K+
Subjt:  KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH

AT4G01060.3 CAPRICE-like MYB38.1e-2054.65Show/hide
Query:  KTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH
        +  KQP+  S   +SS E               V+SLEWEVV +S++EEDL+ RMH+LVGDRW+LIAGRIPGRTA EIERFW++K+
Subjt:  KTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCAAATTTCCCGAAAGTTGGCGTGTATTTTGGCTTTCAGTGAATATCGTCTCGCTAGTCTCGTTCTCTCTGGTATCTTTTCGTCTCTATGGTATTGTCACTCTCGC
TCTCACTCTCGCTAGTCTCGCTCTCTATGGTATTGTGAGCGGGATCAACGACGATAACATTGAGACGAAAGGATACCAGATAGAGCGAGACCAACAAGACAACAAATCTT
CAGAGAAACTGAAACCGGGTTCTCATTTTCCACCAAAAGAGTTGCATTCTGAGGCAATGGAATCCGAAGCTAAGAAGACTGCAAAACAGCCACGAAAACAGTCCAAGAGC
AGGAACTCGAGCTCGGAAGGTGTCTTGATTTTTCTGGTTTTTCTGCCATGGCTACTGAGAAAAGTTACCAGTTTGGAATGGGAGGTCGTTCAAATCAGTGAGCAGGAGGA
GGATCTCATTCATAGAATGCACAGACTTGTTGGAGACAGGTGGGATTTGATCGCGGGACGAATTCCAGGACGAACTGCAGTAGAAATTGAGAGGTTTTGGATATTGAAAC
ATGGTTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCAAATTTCCCGAAAGTTGGCGTGTATTTTGGCTTTCAGTGAATATCGTCTCGCTAGTCTCGTTCTCTCTGGTATCTTTTCGTCTCTATGGTATTGTCACTCTCGC
TCTCACTCTCGCTAGTCTCGCTCTCTATGGTATTGTGAGCGGGATCAACGACGATAACATTGAGACGAAAGGATACCAGATAGAGCGAGACCAACAAGACAACAAATCTT
CAGAGAAACTGAAACCGGGTTCTCATTTTCCACCAAAAGAGTTGCATTCTGAGGCAATGGAATCCGAAGCTAAGAAGACTGCAAAACAGCCACGAAAACAGTCCAAGAGC
AGGAACTCGAGCTCGGAAGGTGTCTTGATTTTTCTGGTTTTTCTGCCATGGCTACTGAGAAAAGTTACCAGTTTGGAATGGGAGGTCGTTCAAATCAGTGAGCAGGAGGA
GGATCTCATTCATAGAATGCACAGACTTGTTGGAGACAGGTGGGATTTGATCGCGGGACGAATTCCAGGACGAACTGCAGTAGAAATTGAGAGGTTTTGGATATTGAAAC
ATGGTTCCTGA
Protein sequenceShow/hide protein sequence
MLKFPESWRVFWLSVNIVSLVSFSLVSFRLYGIVTLALTLASLALYGIVSGINDDNIETKGYQIERDQQDNKSSEKLKPGSHFPPKELHSEAMESEAKKTAKQPRKQSKS
RNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHGS