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Clc01G02180 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G02180
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionArabinogalactan protein
Genome locationClcChr01:1904599..1905830
RNA-Seq ExpressionClc01G02180
SyntenyClc01G02180
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579545.1 Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia]1.6e-1579.17Show/hide
Query:  MAVVAYKVP---LFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIN
        MAVVA K+P      V  +LAML  A AQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSI+
Subjt:  MAVVAYKVP---LFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIN

KAG7017004.1 Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma]5.6e-1679.17Show/hide
Query:  MAVVAYKVP---LFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIN
        MAVVA K+P    F V  +LAM+  A AQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSI+
Subjt:  MAVVAYKVP---LFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIN

XP_004143956.1 arabinogalactan protein 41 [Cucumis sativus]1.9e-1678.38Show/hide
Query:  MAVVAYKVP----LFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSINL
        MAVVA KVP    LF VAL+L  LSSA+AQSL+PAQPPA  DGTSIDQGIAYVLMLLALVLTYIIHSADL ++L
Subjt:  MAVVAYKVP----LFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSINL

XP_008437371.1 PREDICTED: arabinogalactan peptide 22-like [Cucumis melo]1.8e-1474.32Show/hide
Query:  MAVVAYKVP----LFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSINL
        MAVVA K+P    LF VAL+L  LS A AQSL+PAQPPA SDGTSIDQGIAY LMLLALVLTYIIHSAD  ++L
Subjt:  MAVVAYKVP----LFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSINL

XP_022996281.1 arabinogalactan peptide 22-like [Cucurbita maxima]4.1e-1171.05Show/hide
Query:  MAVVAY-KVP---LFAVALLLAML--SSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSINL
        M VVAY KVP   L AVA +LAML  +SA   SL+PAQPP ASDGTS+DQGIAYVLMLLAL+LTYIIH A+L I+L
Subjt:  MAVVAY-KVP---LFAVALLLAML--SSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSINL

TrEMBL top hitse value%identityAlignment
A0A0A0KK44 Uncharacterized protein9.3e-1778.38Show/hide
Query:  MAVVAYKVP----LFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSINL
        MAVVA KVP    LF VAL+L  LSSA+AQSL+PAQPPA  DGTSIDQGIAYVLMLLALVLTYIIHSADL ++L
Subjt:  MAVVAYKVP----LFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSINL

A0A1S3ATI9 arabinogalactan peptide 22-like8.7e-1574.32Show/hide
Query:  MAVVAYKVP----LFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSINL
        MAVVA K+P    LF VAL+L  LS A AQSL+PAQPPA SDGTSIDQGIAY LMLLALVLTYIIHSAD  ++L
Subjt:  MAVVAYKVP----LFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSINL

A0A5D3C2F1 Arabinogalactan peptide 22-like8.7e-1574.32Show/hide
Query:  MAVVAYKVP----LFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSINL
        MAVVA K+P    LF VAL+L  LS A AQSL+PAQPPA SDGTSIDQGIAY LMLLALVLTYIIHSAD  ++L
Subjt:  MAVVAYKVP----LFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSINL

A0A6J1CXM0 arabinogalactan peptide 22-like1.1e-0967.8Show/hide
Query:  FAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIN
        F +   L + + A  +S++PAQP A SDGTSIDQGIAY LMLLALVLTYIIHSADLSI+
Subjt:  FAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIN

A0A6J1K4A3 arabinogalactan peptide 22-like2.0e-1171.05Show/hide
Query:  MAVVAY-KVP---LFAVALLLAML--SSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSINL
        M VVAY KVP   L AVA +LAML  +SA   SL+PAQPP ASDGTS+DQGIAYVLMLLAL+LTYIIH A+L I+L
Subjt:  MAVVAY-KVP---LFAVALLLAML--SSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSINL

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 161.2e-0871.43Show/hide
Query:  MLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLS
        +LS A AQSLAPA P   SDGTSIDQGIAY+LM++ALVLTY+IH  D S
Subjt:  MLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLS

Q8L9T8 Arabinogalactan protein 417.6e-0868.63Show/hide
Query:  VALLLA-MLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH
        V+++ A +L  AHAQS APA P   SDGT+IDQGIAYVLML+ALVLTY+IH
Subjt:  VALLLA-MLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH

Q9FK16 Arabinogalactan protein 223.5e-0549.21Show/hide
Query:  MAVVAYKVPLFAVALLLAMLSSAHAQSLAPAQPPA-ASDGTSIDQGIAYVLMLLALVLTYIIH
        MA + + + + AV ++++++    AQS + +  PA  SDGTSIDQGIAYVLM++AL LTY IH
Subjt:  MAVVAYKVPLFAVALLLAMLSSAHAQSLAPAQPPA-ASDGTSIDQGIAYVLMLLALVLTYIIH

Q9M373 Arabinogalactan protein 202.9e-0758.21Show/hide
Query:  MAVVAYKVPLFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLS
        +AV+A    +FAV     +   A AQSLAPA P   SDGTSIDQGIAY+LM++ALVLTY+IH  D S
Subjt:  MAVVAYKVPLFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLS

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 168.3e-1071.43Show/hide
Query:  MLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLS
        +LS A AQSLAPA P   SDGTSIDQGIAY+LM++ALVLTY+IH  D S
Subjt:  MLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLS

AT3G61640.1 arabinogalactan protein 202.1e-0858.21Show/hide
Query:  MAVVAYKVPLFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLS
        +AV+A    +FAV     +   A AQSLAPA P   SDGTSIDQGIAY+LM++ALVLTY+IH  D S
Subjt:  MAVVAYKVPLFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLS

AT5G24105.1 arabinogalactan protein 415.4e-0968.63Show/hide
Query:  VALLLA-MLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH
        V+++ A +L  AHAQS APA P   SDGT+IDQGIAYVLML+ALVLTY+IH
Subjt:  VALLLA-MLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH

AT5G53250.1 arabinogalactan protein 222.5e-0649.21Show/hide
Query:  MAVVAYKVPLFAVALLLAMLSSAHAQSLAPAQPPA-ASDGTSIDQGIAYVLMLLALVLTYIIH
        MA + + + + AV ++++++    AQS + +  PA  SDGTSIDQGIAYVLM++AL LTY IH
Subjt:  MAVVAYKVPLFAVALLLAMLSSAHAQSLAPAQPPA-ASDGTSIDQGIAYVLMLLALVLTYIIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTCGTTGCTTATAAGGTCCCTTTGTTTGCTGTTGCTTTGCTTTTGGCTATGCTTTCCTCTGCTCATGCTCAATCTTTGGCTCCGGCTCAACCTCCTGCTGCTAG
CGATGGGACAAGCATAGACCAAGGGATTGCCTATGTATTGATGTTGTTGGCCTTGGTGCTCACCTACATTATCCATTCAGCGGACCTTTCTATCAATTTATAA
mRNA sequenceShow/hide mRNA sequence
GGTTGTACTGCATCTTTTACAAAAAAACAAATGCCCCTAAATGAATGGTGGTAACAATTACTTCTAAAGTATTCACTTAGTTTCAAAAATACTCTTTCATCTTTCAAAAT
TTGCTATATTAACCCATGACATAAGAATCCAAAAGAAAGAAAAAGGAAATGGAAGCACGAGAACGAAAAAGAAGCCTATAGACTATTTCAAGGAAACCCAAAAAAAGAGT
AAGAAATGAGCGATTTAGACGGCCATTGTAGTTGGCAATTGCAACATTCCAAACCAAATGAAGGCTATAAAATCCATAGCCCCATTGGTTGAGAGGCACACCGCCATTGC
CACGCCGTCATCGTCGTCTTCTTCATTGAAACTGTCAATTGGTGGTGGTTCGGCTAGCCCCCTCCCCTTTTGACAGTTTCAAAACCATTTATCAATTATCAGCCTAGATA
CTACTTTAATTTTCTAATAATATCTCTCTCTGCTTCGCCTCTCCGGAGCTTTCCTCTCTACTTCTTCCATTTCTGAGAGAGACGTTGCAGAGAGAGATTTCATTCCCTCT
TTTTTTTTTTTTTTCTCTTTCTTTTTAATTTTCACTTACAACTTTCTACAATGGCGGTCGTTGCTTATAAGGTCCCTTTGTTTGCTGTTGCTTTGCTTTTGGCTATGCTT
TCCTCTGCTCATGCTCAATCTTTGGCTCCGGCTCAACCTCCTGCTGCTAGCGATGGGACAAGCATAGACCAAGGGATTGCCTATGTATTGATGTTGTTGGCCTTGGTGCT
CACCTACATTATCCATTCAGCGGACCTTTCTATCAATTTATAAATTGAATTCAGATTCAGATATCGCAGAGCAGGAATGTCAAATGGGTTTGAAGAATTTATCATAGACA
ATATGGTCTTTTCATTTTTCTTTCTCTAATATGATCTCATGGAACTGAACTTTACATGTAAATGAATGCAATGATAACTTCTTTTACCTCAATGGTGGCTTTTCTCCTAT
CCATTATCCATTGCCAATTCTGTTTCTTTTTAAATCAACTGTTGTTTAATAGTTATTGGTAGATTTGATGAGTTTTTAACTTGTTGAGAAAATAGAAATCATGAAAATGA
AACATAAATAAAAACTGTATAACCCTTAGGCCC
Protein sequenceShow/hide protein sequence
MAVVAYKVPLFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSINL