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Clc01G02860 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G02860
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPleiotropic drug resistance protein 3
Genome locationClcChr01:2563359..2564365
RNA-Seq ExpressionClc01G02860
SyntenyClc01G02860
Gene Ontology termsGO:0055085 - transmembrane transport (biological process)
GO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domainsIPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6580843.1 Pleiotropic drug resistance protein 3, partial [Cucurbita argyrosperma subsp. sororia]3.6e-2075.31Show/hide
Query:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV
        QFVNEV+ETI+LDGIKDM+VG   VSGLS +Q K+LTI  ELV NPSIIFMDE TTGLDARA   VMRA+KNV DT RTIV
Subjt:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV

KAG7017599.1 Pleiotropic drug resistance protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma]3.6e-2075.31Show/hide
Query:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV
        QFVNEV+ETI+LDGIKDM+VG   VSGLS +Q K+LTI  ELV NPSIIFMDE TTGLDARA   VMRA+KNV DT RTIV
Subjt:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV

XP_011652141.2 pleiotropic drug resistance protein 3 [Cucumis sativus]2.1e-2076.54Show/hide
Query:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV
        QFVNEVIETI+LDGIKDM+VG   VSGLS +Q K+LTI  ELV NPSIIFMDE TTGLDARA   VMRA+KNV DT RTIV
Subjt:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV

XP_022935421.1 pleiotropic drug resistance protein 3-like [Cucurbita moschata]3.6e-2075.31Show/hide
Query:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV
        QFVNEV+ETI+LDGIKDM+VG   VSGLS +Q K+LTI  ELV NPSIIFMDE TTGLDARA   VMRA+KNV DT RTIV
Subjt:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV

XP_023529014.1 pleiotropic drug resistance protein 3-like [Cucurbita pepo subsp. pepo]3.6e-2075.31Show/hide
Query:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV
        QFVNEV+ETI+LDGIKDM+VG   VSGLS +Q K+LTI  ELV NPSIIFMDE TTGLDARA   VMRA+KNV DT RTIV
Subjt:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV

TrEMBL top hitse value%identityAlignment
A0A0A0LBH1 Uncharacterized protein1.0e-2076.54Show/hide
Query:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV
        QFVNEVIETI+LDGIKDM+VG   VSGLS +Q K+LTI  ELV NPSIIFMDE TTGLDARA   VMRA+KNV DT RTIV
Subjt:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV

A0A1S3B6X0 pleiotropic drug resistance protein 3-like isoform X12.3e-2075.31Show/hide
Query:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV
        QFVNEVIETI+LDGIKDM+VG   V+GLS +Q K+LTI  ELV NPSIIFMDE TTGLDARA   VMRA+KNV DT RTIV
Subjt:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV

A0A1S3B7C4 pleiotropic drug resistance protein 3-like isoform X22.3e-2075.31Show/hide
Query:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV
        QFVNEVIETI+LDGIKDM+VG   V+GLS +Q K+LTI  ELV NPSIIFMDE TTGLDARA   VMRA+KNV DT RTIV
Subjt:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV

A0A5A7UFY6 Pleiotropic drug resistance protein 3-like isoform X12.3e-2075.31Show/hide
Query:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV
        QFVNEVIETI+LDGIKDM+VG   V+GLS +Q K+LTI  ELV NPSIIFMDE TTGLDARA   VMRA+KNV DT RTIV
Subjt:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV

A0A6J1F4L0 pleiotropic drug resistance protein 3-like1.8e-2075.31Show/hide
Query:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV
        QFVNEV+ETI+LDGIKDM+VG   VSGLS +Q K+LTI  ELV NPSIIFMDE TTGLDARA   VMRA+KNV DT RTIV
Subjt:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV

SwissProt top hitse value%identityAlignment
Q5W274 Pleiotropic drug resistance protein 31.5e-2172.84Show/hide
Query:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV
        +FV EVIETI+LDGIK M+VG   VSGLS +Q K+LTI  ELV NPSIIFMDE TTGLDAR+   VMRA+KNVADT RTIV
Subjt:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV

Q8GU83 ABC transporter G family member 413.8e-2065.85Show/hide
Query:  KQFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV
        ++FV+EVI+TI+LD I+D +VG   VSGLS +Q K+LTI  ELV NPS+IFMDE T+GLDARA   VMRA+KNVADT RT+V
Subjt:  KQFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV

Q8GZ52 ABC transporter G family member 306.5e-2066.67Show/hide
Query:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV
        + V EV+ET++LD IKD +VG   +SGLSI+Q K+LTI  ELV NPSIIFMDE TTGLDARA   VMRA+KNVA+T RT+V
Subjt:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV

Q9LFH0 ABC transporter G family member 372.2e-2070.37Show/hide
Query:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV
        +FV +V+ETI+LD IKD +VG   VSGLS +Q K+LTI  ELV NPSIIFMDE TTGLDARA   VMRA+KNVADT RTIV
Subjt:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV

Q9ZUT8 ABC transporter G family member 331.9e-1961.05Show/hide
Query:  YLFLVPK-------QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLT--IELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV
        +L LVP+       +FV +V+ETI+L+ IKD +VG   VSGLS +Q K+LT  +ELV NPSIIFMDE TTGLDARA   VMRA+KNVA+T RTIV
Subjt:  YLFLVPK-------QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLT--IELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV

Arabidopsis top hitse value%identityAlignment
AT2G37280.1 pleiotropic drug resistance 51.3e-2061.05Show/hide
Query:  YLFLVPK-------QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLT--IELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV
        +L LVP+       +FV +V+ETI+L+ IKD +VG   VSGLS +Q K+LT  +ELV NPSIIFMDE TTGLDARA   VMRA+KNVA+T RTIV
Subjt:  YLFLVPK-------QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLT--IELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV

AT3G53480.1 pleiotropic drug resistance 91.6e-2170.37Show/hide
Query:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV
        +FV +V+ETI+LD IKD +VG   VSGLS +Q K+LTI  ELV NPSIIFMDE TTGLDARA   VMRA+KNVADT RTIV
Subjt:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV

AT4G15215.1 pleiotropic drug resistance 133.9e-2064.2Show/hide
Query:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV
        + V EV+ET++L+ IKD MVG   +SGLS +Q K+LTI  ELV NPSIIF+DE TTGLDARA   VMRA+KNVA+T RT+V
Subjt:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV

AT4G15230.1 pleiotropic drug resistance 24.6e-2166.67Show/hide
Query:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV
        + V EV+ET++LD IKD +VG   +SGLSI+Q K+LTI  ELV NPSIIFMDE TTGLDARA   VMRA+KNVA+T RT+V
Subjt:  QFVNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV

AT4G15233.1 ABC-2 and Plant PDR ABC-type transporter family protein5.1e-2065.82Show/hide
Query:  VNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV
        VNEV+ETI+L+ IKD +VG   +SGL+ +Q K+LTI  ELV NPSIIFMDE TTGLDARA   VMRA+KN+A+T RT+V
Subjt:  VNEVIETIKLDGIKDMMVG--SVSGLSIKQHKQLTI--ELVFNPSIIFMDEHTTGLDARAVTTVMRAIKNVADTERTIV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTTGTCGAAAGTCGTTGCTAGAAAAGGAGCAAGTGCAAGAGGGAAAAGAGGAAAAATAGAGAGTAAGAGTGTGAGAATTGAAAATAAGGAAAATTGGGACGAAAA
ACGAGCGGATACATCTAAGGAGAACTCAAAATGGGGGGTTTTCCCAAAATTCAAGAGACATTTGCTCGGATATCTGTTTCTTGTTCCAAAGCAATTTGTGAATGAAGTCA
TTGAGACCATTAAACTTGATGGCATAAAAGATATGATGGTTGGTAGTGTTAGTGGTCTATCGATCAAGCAGCATAAACAATTAACCATAGAGCTTGTTTTCAATCCTTCT
ATCATCTTCATGGATGAGCATACCACTGGTTTGGATGCAAGAGCAGTTACCACTGTCATGCGAGCTATTAAGAATGTGGCTGATACTGAAAGAACAATAGTTTTGTACCA
TCCACCACCCAATTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTTTGTCGAAAGTCGTTGCTAGAAAAGGAGCAAGTGCAAGAGGGAAAAGAGGAAAAATAGAGAGTAAGAGTGTGAGAATTGAAAATAAGGAAAATTGGGACGAAAA
ACGAGCGGATACATCTAAGGAGAACTCAAAATGGGGGGTTTTCCCAAAATTCAAGAGACATTTGCTCGGATATCTGTTTCTTGTTCCAAAGCAATTTGTGAATGAAGTCA
TTGAGACCATTAAACTTGATGGCATAAAAGATATGATGGTTGGTAGTGTTAGTGGTCTATCGATCAAGCAGCATAAACAATTAACCATAGAGCTTGTTTTCAATCCTTCT
ATCATCTTCATGGATGAGCATACCACTGGTTTGGATGCAAGAGCAGTTACCACTGTCATGCGAGCTATTAAGAATGTGGCTGATACTGAAAGAACAATAGTTTTGTACCA
TCCACCACCCAATTTTTGA
Protein sequenceShow/hide protein sequence
MTLSKVVARKGASARGKRGKIESKSVRIENKENWDEKRADTSKENSKWGVFPKFKRHLLGYLFLVPKQFVNEVIETIKLDGIKDMMVGSVSGLSIKQHKQLTIELVFNPS
IIFMDEHTTGLDARAVTTVMRAIKNVADTERTIVLYHPPPNF