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Clc01G03880 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G03880
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransmembrane protein, putative
Genome locationClcChr01:3698620..3698889
RNA-Seq ExpressionClc01G03880
SyntenyClc01G03880
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647470.1 hypothetical protein Csa_004096 [Cucumis sativus]3.4e-1859.38Show/hide
Query:  MVNLETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQA-------SSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA
        M +++TQ RQHPSISK+  LQALN IIQLHFEK LEKK AI   K+   +         + + L+  LSPRL+ RHCWIPIALLS+S LSFYVSVA
Subjt:  MVNLETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQA-------SSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA
XP_008441005.1 PREDICTED: uncharacterized protein LOC103485248 [Cucumis melo]1.5e-1860.42Show/hide
Query:  MVNLETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQA-------SSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA
        M ++ETQ RQHPSISK+  LQALN IIQLHFEK LEKK AI   K+   +         + + L+  LSPRL+ RHCWIPIALLS+S LSFYVSVA
Subjt:  MVNLETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQA-------SSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA
XP_011657774.1 uncharacterized protein LOC101206076 [Cucumis sativus]3.4e-1859.38Show/hide
Query:  MVNLETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQA-------SSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA
        M +++TQ RQHPSISK+  LQALN IIQLHFEK LEKK AI   K+   +         + + L+  LSPRL+ RHCWIPIALLS+S LSFYVSVA
Subjt:  MVNLETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQA-------SSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA
XP_022133031.1 uncharacterized protein LOC111005723 [Momordica charantia]1.9e-1658.33Show/hide
Query:  MVNLETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQA-------SSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA
        M +LE+Q RQHPSI KD  LQALN IIQLHFEK LEKK AI   K+               + L+  LSPRL+ RH WIPI+LLS+S LSFYVSVA
Subjt:  MVNLETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQA-------SSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA
XP_038883211.1 uncharacterized protein LOC120074230 [Benincasa hispida]1.1e-1963.54Show/hide
Query:  MVNLETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQA-------SSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA
        M ++ETQSRQHPSISKD  LQALN IIQLHFEK LEKK AI   K+   +           + L+  LSPRL+ RHCWIPIALLSIS LSFYVSVA
Subjt:  MVNLETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQA-------SSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA
TrEMBL top hitse value%identityAlignment
A0A0A0KKV5 Uncharacterized protein1.7e-1859.38Show/hide
Query:  MVNLETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQA-------SSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA
        M +++TQ RQHPSISK+  LQALN IIQLHFEK LEKK AI   K+   +         + + L+  LSPRL+ RHCWIPIALLS+S LSFYVSVA
Subjt:  MVNLETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQA-------SSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA
A0A1S3B333 uncharacterized protein LOC1034852487.4e-1960.42Show/hide
Query:  MVNLETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQA-------SSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA
        M ++ETQ RQHPSISK+  LQALN IIQLHFEK LEKK AI   K+   +         + + L+  LSPRL+ RHCWIPIALLS+S LSFYVSVA
Subjt:  MVNLETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQA-------SSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA
A0A6J1BTW4 uncharacterized protein LOC1110057239.1e-1758.33Show/hide
Query:  MVNLETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQA-------SSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA
        M +LE+Q RQHPSI KD  LQALN IIQLHFEK LEKK AI   K+               + L+  LSPRL+ RH WIPI+LLS+S LSFYVSVA
Subjt:  MVNLETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQA-------SSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA
A0A6J1GDE2 uncharacterized protein LOC1114529664.5e-1655.21Show/hide
Query:  MVNLETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQA-------SSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA
        M +LE  +R HPSIS +  LQALN +IQLHFEK LEKK AI   K++            + + L+  LSPRL+ RHCWIPIALLS+S L+FYVSVA
Subjt:  MVNLETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQA-------SSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA
A0A6J1IL37 uncharacterized protein LOC1114780211.0e-1554.17Show/hide
Query:  MVNLETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQA-------SSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA
        M +LE  +R HPSIS +  LQALN +IQLHFEK LEKK AI   K+             + + L+  LSPRL+ RHCWIPIALLS+S L+FYVS+A
Subjt:  MVNLETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQA-------SSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G18800.1 unknown protein3.5e-1351.06Show/hide
Query:  ETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQ---------ASSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA
        E      P I K+  LQALN IIQLHFEK LEKK AI   K++  +         A     LS P S RL  RHCW PI LLS S L FYVSVA
Subjt:  ETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQ---------ASSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAATTTGGAAACCCAGAGTCGGCAACACCCATCAATCTCCAAAGACAGAAATCTCCAGGCTCTCAACATCATAATCCAGCTCCATTTCGAGAAGAACCTTGAGAA
GAAGCTCGCCATAAGATCTCCAAAAGAAAGAGCTCCACAAGCTTCTTCAGCTCTTCATCTTTCTGGGCCACTTTCCCCGCGCCTCAAATACCGCCATTGTTGGATCCCCA
TTGCTCTTCTCTCCATTTCCGATCTCAGTTTCTACGTCTCTGTAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGAATTTGGAAACCCAGAGTCGGCAACACCCATCAATCTCCAAAGACAGAAATCTCCAGGCTCTCAACATCATAATCCAGCTCCATTTCGAGAAGAACCTTGAGAA
GAAGCTCGCCATAAGATCTCCAAAAGAAAGAGCTCCACAAGCTTCTTCAGCTCTTCATCTTTCTGGGCCACTTTCCCCGCGCCTCAAATACCGCCATTGTTGGATCCCCA
TTGCTCTTCTCTCCATTTCCGATCTCAGTTTCTACGTCTCTGTAGCTTAG
Protein sequenceShow/hide protein sequence
MVNLETQSRQHPSISKDRNLQALNIIIQLHFEKNLEKKLAIRSPKERAPQASSALHLSGPLSPRLKYRHCWIPIALLSISDLSFYVSVA