; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G04410 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G04410
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionVAN3-binding protein
Genome locationClcChr01:4227728..4234021
RNA-Seq ExpressionClc01G04410
SyntenyClc01G04410
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR013666 - Pleckstrin-like, plant
IPR040269 - VAN3-binding protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606172.1 VAN3-binding protein, partial [Cucurbita argyrosperma subsp. sororia]2.5e-8293.71Show/hide
Query:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK
        ++  KIASVSPYDRIMA NHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSK+VGGTFSKKNKCVVYGLCDETSSWPYERK
Subjt:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK

Query:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE
        RD+SNEIYFG+KTAQGL+EFKCKNK+HKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE
Subjt:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE

KAG7036118.1 VAN3-binding protein [Cucurbita argyrosperma subsp. argyrosperma]2.5e-8293.71Show/hide
Query:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK
        ++  KIASVSPYDRIMA NHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSK+VGGTFSKKNKCVVYGLCDETSSWPYERK
Subjt:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK

Query:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE
        RD+SNEIYFG+KTAQGL+EFKCKNK+HKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE
Subjt:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE

XP_022957682.1 VAN3-binding protein [Cucurbita moschata]2.5e-8293.71Show/hide
Query:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK
        ++  KIASVSPYDRIMA NHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSK+VGGTFSKKNKCVVYGLCDETSSWPYERK
Subjt:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK

Query:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE
        RD+SNEIYFG+KTAQGL+EFKCKNK+HKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE
Subjt:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE

XP_022996403.1 VAN3-binding protein [Cucurbita maxima]1.3e-8193.08Show/hide
Query:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK
        ++  KIASVSPYDRIMA NHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSK+VGGTFSKKNKCVVYGLCDETSSWPYERK
Subjt:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK

Query:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE
        RD+ NEIYFG+KTAQGL+EFKCKNK+HKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE
Subjt:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE

XP_038874832.1 VAN3-binding protein [Benincasa hispida]1.3e-8193.71Show/hide
Query:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK
        ++  KIASVSPYDRIMA NHWATAFN HMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSK+VGGTFSKKNKCVVYGLCDETSSWPYERK
Subjt:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK

Query:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE
        RD+SNEIYFG+KTAQGLLEFKCKNKIHKQSWVQGIQSLLHR NCIETTRRSLQILSFSE
Subjt:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE

TrEMBL top hitse value%identityAlignment
A0A0A0KRB0 Uncharacterized protein4.4e-8092.45Show/hide
Query:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK
        ++  KIASVSPYDRI A NHWATAFNSHMEEQELPCVGELLQF++KG LRWKEVSVYINKKSQVIASIKSK+VGGTFSKKNKCVVYGLCDETSSWPYERK
Subjt:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK

Query:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE
        RD+SNEIYFGMKTAQGLLEFKCKNK HKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE
Subjt:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE

A0A1S3ASR8 VAN3-binding protein-like3.7e-7991.19Show/hide
Query:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK
        ++  KIASVSPYDRI A NHW TAFNSHMEEQELPCVGELLQFT+KGTLRWKEVSVYINKKSQVIASIKSK+VGG FSKKNKCVVYGLCDETSSWPYERK
Subjt:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK

Query:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE
        RD+SNEIYFGMKTAQGLLEFKCKNK HKQSWVQGIQSLLH+VNCIETTRRSLQILS SE
Subjt:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE

A0A5A7TE50 VAN3-binding protein-like3.7e-7991.19Show/hide
Query:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK
        ++  KIASVSPYDRI A NHW TAFNSHMEEQELPCVGELLQFT+KGTLRWKEVSVYINKKSQVIASIKSK+VGG FSKKNKCVVYGLCDETSSWPYERK
Subjt:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK

Query:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE
        RD+SNEIYFGMKTAQGLLEFKCKNK HKQSWVQGIQSLLH+VNCIETTRRSLQILS SE
Subjt:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE

A0A6J1GZT3 VAN3-binding protein1.2e-8293.71Show/hide
Query:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK
        ++  KIASVSPYDRIMA NHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSK+VGGTFSKKNKCVVYGLCDETSSWPYERK
Subjt:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK

Query:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE
        RD+SNEIYFG+KTAQGL+EFKCKNK+HKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE
Subjt:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE

A0A6J1KAN8 VAN3-binding protein6.1e-8293.08Show/hide
Query:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK
        ++  KIASVSPYDRIMA NHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSK+VGGTFSKKNKCVVYGLCDETSSWPYERK
Subjt:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK

Query:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE
        RD+ NEIYFG+KTAQGL+EFKCKNK+HKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE
Subjt:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE

SwissProt top hitse value%identityAlignment
Q8W4K5 VAN3-binding protein4.3e-1642.73Show/hide
Query:  QELPCVG-ELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERKRDVSNEIYFGMKT-AQGLLEFKCKNKIHKQ
        QEL   G ELL+ T+ G L WK VSVYINK  Q +  +KSK+VGGTF+KK K +V  +  +  +W      +     YFG+KT  + ++EF+C+N+   +
Subjt:  QELPCVG-ELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERKRDVSNEIYFGMKT-AQGLLEFKCKNKIHKQ

Query:  SWVQGIQSLL
         W QG+  LL
Subjt:  SWVQGIQSLL

Arabidopsis top hitse value%identityAlignment
AT3G22810.1 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region2.0e-2142.74Show/hide
Query:  FNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERKRDVSNEI-YFGMKTA-QGLLEFKC
        F  H   + L   G+LL+ T+KG L WK VSVYIN+ +QVI  +KS++VGGTF+KKNK VV  +     +WP     +   ++ YFG+KT  +G++EF+C
Subjt:  FNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERKRDVSNEI-YFGMKTA-QGLLEFKC

Query:  KNKIHKQSWVQGIQSLL
        K++   + W QG+  L+
Subjt:  KNKIHKQSWVQGIQSLL

AT4G16670.1 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region1.3e-2840.59Show/hide
Query:  RKAEKIASVSPYDRIMAHNH-WATAFNSHMEEQEL-------PCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDET
        ++A+  A++SP +R++   H  ++  +      EL          GEL+Q T+ G LRWK V VYINKKSQVI  IKSK+V G FS K+K +V  +C+  
Subjt:  RKAEKIASVSPYDRIMAHNH-WATAFNSHMEEQEL-------PCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDET

Query:  SSWPYERKRDVSN---EIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE
        S    +  +D  N   E+YFG+ T +GL +FKCK+K  KQ+WV  I++LLHRV  +E    SL+ ++ ++
Subjt:  SSWPYERKRDVSN---EIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSE

AT4G17350.1 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region1.4e-4955.7Show/hide
Query:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK
        ++A K A+++P++R  + +HW   F   +EE  LP  GEL+Q  + G  R K V VYINKKSQV+  +KSK+VGG FSKK KCVVYG+CDE S+WPY ++
Subjt:  RKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERK

Query:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFS
        R+ S E+YFG+KT QGLLEFKCK+KIHKQ WV G+QSLL +VNC E  + SL  L+ +
Subjt:  RDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFS

AT4G32785.1 CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Pleckstrin homology (InterPro:IPR001849)3.4e-2449.04Show/hide
Query:  ELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERKRD--VSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQ
        ELL+ T+KG L WK+VS  IN   QV+  +KSK+VGGTF+K  KCVV G+C +   W +  + D  V    YFG+KT + ++EF+C NK  KQ W++GIQ
Subjt:  ELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYERKRD--VSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQ

Query:  SLLH
         LL+
Subjt:  SLLH

AT5G47440.1 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region8.5e-4453.46Show/hide
Query:  RKAEKIASVSPYDRIMAHNHW-ATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYER
        +++ K A+++P +R  + +HW        +EE  LP  GEL+Q  + G  R K V VYINKKSQV+  +KSK+VGG FSKK KCVVYG+CDE S+WP  +
Subjt:  RKAEKIASVSPYDRIMAHNHW-ATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYGLCDETSSWPYER

Query:  KRDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFS
        +R+ S E+YFG+KT QGLLEFKCK+KI KQ WV GIQS L  V+C+E  + SL+ LS S
Subjt:  KRDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGTATTATTTCTTATTACTAATCCAGCTTTGCGAGGAGAAGCGGCTTTCCGATCGAGATTACCGAAGGAAGGCCGAAAAAATCGCTTCTGTGAGTCCTTATGATAG
GATCATGGCTCATAATCATTGGGCTACAGCTTTTAATAGTCATATGGAGGAGCAGGAACTTCCCTGTGTGGGTGAATTACTGCAGTTTACACAGAAAGGAACCCTGAGAT
GGAAGGAGGTCTCTGTCTACATCAACAAGAAATCTCAGGTTATAGCATCGATTAAAAGCAAGTATGTTGGAGGGACCTTTTCCAAGAAAAACAAATGTGTTGTTTACGGG
CTCTGCGACGAAACGTCTTCATGGCCATACGAAAGAAAGAGAGATGTCTCGAATGAGATCTATTTCGGCATGAAAACCGCACAAGGTCTTCTAGAGTTCAAGTGCAAGAA
CAAGATCCATAAACAGAGCTGGGTTCAAGGGATCCAAAGTCTTCTTCATCGAGTTAACTGCATCGAAACAACAAGAAGGTCTTTACAGATTTTGAGTTTCAGTGAGATTC
CTCCTCCCTTCACTAAAATCCTCGGCTTCAACCTTGCGATTCTCTCGCTCTCTGATCGACAAATGCCTTTCAGGACGTTCATTGAAGTGGAACCGCCCAGTCCACTCCGA
TACATAATTGGGGCTGTCATAATGATGATCGGAGTCGTATTGCCCCTTGGATACATGCTGTTCCGGAATAAGCGTGGACCTTCTTCTTCTTCTTACTCCAAACAGACGTA
G
mRNA sequenceShow/hide mRNA sequence
ATGCTGTATTATTTCTTATTACTAATCCAGCTTTGCGAGGAGAAGCGGCTTTCCGATCGAGATTACCGAAGGAAGGCCGAAAAAATCGCTTCTGTGAGTCCTTATGATAG
GATCATGGCTCATAATCATTGGGCTACAGCTTTTAATAGTCATATGGAGGAGCAGGAACTTCCCTGTGTGGGTGAATTACTGCAGTTTACACAGAAAGGAACCCTGAGAT
GGAAGGAGGTCTCTGTCTACATCAACAAGAAATCTCAGGTTATAGCATCGATTAAAAGCAAGTATGTTGGAGGGACCTTTTCCAAGAAAAACAAATGTGTTGTTTACGGG
CTCTGCGACGAAACGTCTTCATGGCCATACGAAAGAAAGAGAGATGTCTCGAATGAGATCTATTTCGGCATGAAAACCGCACAAGGTCTTCTAGAGTTCAAGTGCAAGAA
CAAGATCCATAAACAGAGCTGGGTTCAAGGGATCCAAAGTCTTCTTCATCGAGTTAACTGCATCGAAACAACAAGAAGGTCTTTACAGATTTTGAGTTTCAGTGAGATTC
CTCCTCCCTTCACTAAAATCCTCGGCTTCAACCTTGCGATTCTCTCGCTCTCTGATCGACAAATGCCTTTCAGGACGTTCATTGAAGTGGAACCGCCCAGTCCACTCCGA
TACATAATTGGGGCTGTCATAATGATGATCGGAGTCGTATTGCCCCTTGGATACATGCTGTTCCGGAATAAGCGTGGACCTTCTTCTTCTTCTTACTCCAAACAGACGTA
GGACCAAAGTTTTGATTTAGTTACATAGAGGAAGAGATGCTTCTATTTCAGTTTTGGGCTCTCAGCTAATGGAGGATGATGCTATTCACAGGGTAATGTAAATGCATTGA
GATTTCAAATTTCTGTGGAAACTGACATGATTATAGTCCAATTATCGACCTTAAGGCGACACATTTTGTCGTCATCAATGTCATACAACTGTATTTCATCATTTTGTATC
GTTGAAGGAATTATGTGTGATTGCTGTTGATGACCCGCATTCAGTATTATGAAGATACGACCACAGAGCCATGAAA
Protein sequenceShow/hide protein sequence
MLYYFLLLIQLCEEKRLSDRDYRRKAEKIASVSPYDRIMAHNHWATAFNSHMEEQELPCVGELLQFTQKGTLRWKEVSVYINKKSQVIASIKSKYVGGTFSKKNKCVVYG
LCDETSSWPYERKRDVSNEIYFGMKTAQGLLEFKCKNKIHKQSWVQGIQSLLHRVNCIETTRRSLQILSFSEIPPPFTKILGFNLAILSLSDRQMPFRTFIEVEPPSPLR
YIIGAVIMMIGVVLPLGYMLFRNKRGPSSSSYSKQT