; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G04450 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G04450
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibosomal protein L15
Genome locationClcChr01:4246891..4248152
RNA-Seq ExpressionClc01G04450
SyntenyClc01G04450
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000439 - Ribosomal protein L15e
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR024794 - Ribosomal protein L15e core domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3475692.1 60S ribosomal protein L15 [Gossypium australe]7.7e-3248.69Show/hide
Query:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK
        RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKA     + + G +V  + V +     +RPVPKGIVYGKPT  G   ++    +    ++    K
Subjt:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK

Query:  VG-----------------WFEGSQLRTGSTSA--------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL
        +G                 +FE   + T   +               + +  RGLTSAGKKYRGLRGKGHLHHKARPSRRA W R  T SL
Subjt:  VG-----------------WFEGSQLRTGSTSA--------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL

KAG8476999.1 hypothetical protein CXB51_030401 [Gossypium anomalum]5.9e-3248.69Show/hide
Query:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK
        RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKA     + + G +V  + V +     +RPVPKGIVYGKPT  G   ++    +    ++    K
Subjt:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK

Query:  VG-----------------WFEGSQLRTGSTSAQA--------------QGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL
        +G                 +FE   + T   + +               +  RGLTSAGKKYRGLRGKGHLHHKARPSRRA W R  T SL
Subjt:  VG-----------------WFEGSQLRTGSTSAQA--------------QGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL

MBA0604331.1 hypothetical protein [Gossypium davidsonii]1.0e-3148.69Show/hide
Query:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK
        RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKA     + + G +V  + V +     +RPVPKGIVYGKPT  G   ++    +    ++    K
Subjt:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK

Query:  VG-----------------WFEGSQLRTGSTSA--------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL
        +G                 +FE   +     +               + +  RGLTSAGKKYRGLRGKGHLHHKARPSRRATW R  T SL
Subjt:  VG-----------------WFEGSQLRTGSTSA--------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL

MBA0732085.1 hypothetical protein [Gossypium gossypioides]1.0e-3148.69Show/hide
Query:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK
        RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKA     + + G +V  + V +     +RPVPKGIVYGKPT  G   ++    +    ++    K
Subjt:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK

Query:  VG-----------------WFEGSQLRTGSTSA--------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL
        +G                 +FE   +     +               + +  RGLTSAGKKYRGLRGKGHLHHKARPSRRATW R  T SL
Subjt:  VG-----------------WFEGSQLRTGSTSA--------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL

XP_012489073.1 PREDICTED: 60S ribosomal protein L15 [Gossypium raimondii]7.7e-3248.69Show/hide
Query:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK
        RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKA     + + G +V  + V +     +RPVPKGIVYGKPT  G   ++    +    ++    K
Subjt:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK

Query:  VG-----------------WFEGSQLRTGSTSA--------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL
        +G                 +FE   + T   +               + +  RGLTSAGKKYRGLRGKGHLHHKARPSRRA W R  T SL
Subjt:  VG-----------------WFEGSQLRTGSTSA--------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL

TrEMBL top hitse value%identityAlignment
A0A0B0MN21 Ribosomal protein L153.7e-3248.69Show/hide
Query:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK
        RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKA     + + G +V  + V +     +RPVPKGIVYGKPT  G   ++    +    ++    K
Subjt:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK

Query:  VG-----------------WFEGSQLRTGSTSA--------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL
        +G                 +FE   + T   +               + +  RGLTSAGKKYRGLRGKGHLHHKARPSRRA W R  T SL
Subjt:  VG-----------------WFEGSQLRTGSTSA--------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL

A0A0D2QLI4 Ribosomal protein L153.7e-3248.69Show/hide
Query:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK
        RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKA     + + G +V  + V +     +RPVPKGIVYGKPT  G   ++    +    ++    K
Subjt:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK

Query:  VG-----------------WFEGSQLRTGSTSA--------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL
        +G                 +FE   + T   +               + +  RGLTSAGKKYRGLRGKGHLHHKARPSRRA W R  T SL
Subjt:  VG-----------------WFEGSQLRTGSTSA--------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL

A0A1U8L8E9 Ribosomal protein L153.7e-3248.69Show/hide
Query:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK
        RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKA     + + G +V  + V +     +RPVPKGIVYGKPT  G   ++    +    ++    K
Subjt:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK

Query:  VG-----------------WFEGSQLRTGSTSA--------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL
        +G                 +FE   + T   +               + +  RGLTSAGKKYRGLRGKGHLHHKARPSRRA W R  T SL
Subjt:  VG-----------------WFEGSQLRTGSTSA--------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL

A0A2P5Y4W7 Ribosomal protein L153.7e-3248.69Show/hide
Query:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK
        RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKA     + + G +V  + V +     +RPVPKGIVYGKPT  G   ++    +    ++    K
Subjt:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK

Query:  VG-----------------WFEGSQLRTGSTSA--------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL
        +G                 +FE   + T   +               + +  RGLTSAGKKYRGLRGKGHLHHKARPSRRA W R  T SL
Subjt:  VG-----------------WFEGSQLRTGSTSA--------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL

A0A5D2N6Q3 Ribosomal protein L153.7e-3248.69Show/hide
Query:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK
        RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKA     + + G +V  + V +     +RPVPKGIVYGKPT  G   ++    +    ++    K
Subjt:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK

Query:  VG-----------------WFEGSQLRTGSTSA--------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL
        +G                 +FE   + T   +               + +  RGLTSAGKKYRGLRGKGHLHHKARPSRRA W R  T SL
Subjt:  VG-----------------WFEGSQLRTGSTSA--------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL

SwissProt top hitse value%identityAlignment
O23515 60S ribosomal protein L15-13.5e-2744.02Show/hide
Query:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK
        RKKQSDVMRFLQRVRCWEYRQ PSIVR+  PTRPDKA     + + G +V  + V +     +RPVPKGIVYGKPT  G   ++    +    ++    K
Subjt:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK

Query:  VGWF---EGSQLRTGSTSA----------------------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATWR
        +G         L   ST                              + +  RGLTS GKK RGLRGKGH +HK RPSRRATW+
Subjt:  VGWF---EGSQLRTGSTSA----------------------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATWR

O65050 60S ribosomal protein L15-17.0e-2846.11Show/hide
Query:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERA-
        +KKQSDVMRFLQRVRCWE+RQ P IVRV  P+RPDKA     + + G +V  + V +     +RPVPKGIVYGKP   G    ++  Q+++     ERA 
Subjt:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERA-

Query:  -KVGW---FEGSQLRTGSTSA--------QAQGA--------------------RGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL
         K+G         +   ST          QA  A                    RGLTSAGKKYRGLRG+GHL+HKARPS+RATW R  T SL
Subjt:  -KVGW---FEGSQLRTGSTSA--------QAQGA--------------------RGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL

O65082 60S ribosomal protein L15-22.8e-2945.6Show/hide
Query:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERA-
        +KKQSDVMRFLQRVRCWEYRQ P IVR+ HPTRPDKA     + + G +V  + V +     +RPVPKGIVYGKP   G    ++  Q+++     ERA 
Subjt:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERA-

Query:  -KVG-----------------WFEGSQLRTGSTSA--------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL
         K+G                 ++E   +    T                + +  RGLTSAGKKYRGLRG+GHL+HKARPS+RATW R  T SL
Subjt:  -KVG-----------------WFEGSQLRTGSTSA--------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSL

O82528 60S ribosomal protein L154.4e-3047.4Show/hide
Query:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK
        RKKQSDVMRFLQRVRCWEYRQ PSIVRV  PTRPDKA     + + G +V  + V +     +RPVPKGIVYGKPT  G   ++    +    ++    K
Subjt:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK

Query:  VG--------WF-EGSQLRTGSTSA--QAQGA--------------------RGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSLP
        +G        W  E S  +        QA  A                    RGLTSAGKKYRGLRG+GHLH+KA PSRRA W R  T SLP
Subjt:  VG--------WF-EGSQLRTGSTSA--QAQGA--------------------RGLTSAGKKYRGLRGKGHLHHKARPSRRATW-RGTTHSLP

Q8VYF1 60S ribosomal protein L15-23.5e-2744.02Show/hide
Query:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK
        RKKQSDVMRFLQRVRCWEYRQ PSIVR+  PTRPDKA     + + G +V  + V +     +RPVPKGIVYGKPT  G   ++    +    ++    K
Subjt:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK

Query:  VGWF---EGSQLRTGSTSA----------------------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATWR
        +G         L   ST                              + +  RGLTS GKK RGLRGKGH +HK RPSRRATW+
Subjt:  VGWF---EGSQLRTGSTSA----------------------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATWR

Arabidopsis top hitse value%identityAlignment
AT4G16720.1 Ribosomal protein L23/L15e family protein2.5e-2844.02Show/hide
Query:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK
        RKKQSDVMRFLQRVRCWEYRQ PSIVR+  PTRPDKA     + + G +V  + V +     +RPVPKGIVYGKPT  G   ++    +    ++    K
Subjt:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK

Query:  VGWF---EGSQLRTGSTSA----------------------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATWR
        +G         L   ST                              + +  RGLTS GKK RGLRGKGH +HK RPSRRATW+
Subjt:  VGWF---EGSQLRTGSTSA----------------------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATWR

AT4G17390.1 Ribosomal protein L23/L15e family protein2.5e-2844.02Show/hide
Query:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK
        RKKQSDVMRFLQRVRCWEYRQ PSIVR+  PTRPDKA     + + G +V  + V +     +RPVPKGIVYGKPT  G   ++    +    ++    K
Subjt:  RKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAK

Query:  VGWF---EGSQLRTGSTSA----------------------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATWR
        +G         L   ST                              + +  RGLTS GKK RGLRGKGH +HK RPSRRATW+
Subjt:  VGWF---EGSQLRTGSTSA----------------------------QAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATWR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAAGAAGCAGTCCGATGTGATGAGATTTCTACAGAGGGTGAGATGCTGGGAATATCGCCAACATCCATCCATTGTTCGTGTCAATCACCCCACTCGCCCTGATAA
AGCTCCGCCGTCTTGGTTACAAGGCCAAGCAGGTGATTTGGTTAGCATATTTTCAGTTATCATGCCATTGAAATTTTTGGAGAGGCCGGTTCCCAAGGGTATTGTGTATG
GAAAGCCAACCAAACCAGGGTGTTACCCAATTGAAGTTCCAGCGCAGCAAGCGATCAGTGTGCAGAAGAACGAGCGGGCGAAAGTTGGGTGGTTTGAGGGTTCTCAACTC
CGTACTGGATCAACGAGTGCACAAGCACAGGGAGCTCGAGGACTTACATCCGCCGGAAAGAAGTACAGGGGACTTCGAGGAAAAGGACACTTGCACCACAAAGCCAGGCC
TTCTCGCAGAGCGACCTGGAGAGGAACAACACACTCTCTCCCTGCGTCGTTATCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGAAGAAGCAGTCCGATGTGATGAGATTTCTACAGAGGGTGAGATGCTGGGAATATCGCCAACATCCATCCATTGTTCGTGTCAATCACCCCACTCGCCCTGATAA
AGCTCCGCCGTCTTGGTTACAAGGCCAAGCAGGTGATTTGGTTAGCATATTTTCAGTTATCATGCCATTGAAATTTTTGGAGAGGCCGGTTCCCAAGGGTATTGTGTATG
GAAAGCCAACCAAACCAGGGTGTTACCCAATTGAAGTTCCAGCGCAGCAAGCGATCAGTGTGCAGAAGAACGAGCGGGCGAAAGTTGGGTGGTTTGAGGGTTCTCAACTC
CGTACTGGATCAACGAGTGCACAAGCACAGGGAGCTCGAGGACTTACATCCGCCGGAAAGAAGTACAGGGGACTTCGAGGAAAAGGACACTTGCACCACAAAGCCAGGCC
TTCTCGCAGAGCGACCTGGAGAGGAACAACACACTCTCTCCCTGCGTCGTTATCGTGA
Protein sequenceShow/hide protein sequence
MRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKAPPSWLQGQAGDLVSIFSVIMPLKFLERPVPKGIVYGKPTKPGCYPIEVPAQQAISVQKNERAKVGWFEGSQL
RTGSTSAQAQGARGLTSAGKKYRGLRGKGHLHHKARPSRRATWRGTTHSLPASLS