CuGenDBv2

Gene ID	Clc01G04540
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	E3 ubiquitin-protein ligase HOS1
Genome location	ClcChr01:4310592..4311257
RNA-Seq Expression	Clc01G04540
Synteny	Clc01G04540
Gene Ontology terms	GO:0006004 - fucose metabolic process (biological process) GO:0009409 - response to cold (biological process) GO:0010228 - vegetative to reproductive phase transition of meristem (biological process) GO:0016567 - protein ubiquitination (biological process) GO:0045892 - negative regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0004842 - ubiquitin-protein transferase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039734.1 E3 ubiquitin-protein ligase HOS1 [Cucumis melo var. makuwa]

9.0e-65

75.81

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Query:  QNSLHKSVNFEDMFSSGFHQASAMNISPSEEATR----------------------KQNGITNQVRNTSPYSRRITANPIYNTPSSKFGLLDVPSRGVQE
        Q +LH+SVNF+D+FSSGFHQASAMNISPSEEATR                      +QNGITNQVRNTSPYSRRITANPIY+TPSS FGLLD PSRGVQE
Subjt:  QNSLHKSVNFEDMFSSGFHQASAMNISPSEEATR----------------------KQNGITNQVRNTSPYSRRITANPIYNTPSSKFGLLDVPSRGVQE

Query:  NGS-SKTAVPIGDNGTWNISSLDDPMDISSHGGVQDSAADIRYSNGAPRWRSDEASDEEEPSLDRVPSIVRHRATRSSTRRTRSTK
        NGS +K  V I DNGTWN+SSLDDPMDISSHG VQDSA D RYSNGAPRWRSDEASDEEE SLDR  SIVRHR TRSSTRRTRSTK
Subjt:  NGS-SKTAVPIGDNGTWNISSLDDPMDISSHGGVQDSAADIRYSNGAPRWRSDEASDEEEPSLDRVPSIVRHRATRSSTRRTRSTK

XP_004152422.1 E3 ubiquitin-protein ligase HOS1 [Cucumis sativus]

1.1e-62

74.33

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Query:  QNSLHKSVNFEDMFSSGFHQASAMNISPSEEATR----------------------KQNGITNQVRNTSPYSRRITANPIYNTPSSKFGLLDVPSRGVQE
        Q +LH+SVNF+D+FSSGFHQASAMNISPSEEATR                      +Q G +NQVRNT PYSRRITANPIYNTPSS FGLLD PSRGVQE
Subjt:  QNSLHKSVNFEDMFSSGFHQASAMNISPSEEATR----------------------KQNGITNQVRNTSPYSRRITANPIYNTPSSKFGLLDVPSRGVQE

Query:  NGS-SKTAVPIGDNGTWNISSLDDPMDISSHGGVQDSAADIRYSNGAPRWRSDEASDEEEPSLDRVPSIVRHRATRSSTRRTRSTKR
        NGS +K AV   DNGTWN SSLDDPMDISSHG VQDSAAD RY NGAPRWRSDEASDEEEP LDR  SIVRHR TRSSTRRTRSTKR
Subjt:  NGS-SKTAVPIGDNGTWNISSLDDPMDISSHGGVQDSAADIRYSNGAPRWRSDEASDEEEPSLDRVPSIVRHRATRSSTRRTRSTKR

XP_008437046.1 PREDICTED: E3 ubiquitin-protein ligase HOS1 [Cucumis melo]

4.0e-65

75.94

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Query:  QNSLHKSVNFEDMFSSGFHQASAMNISPSEEATR----------------------KQNGITNQVRNTSPYSRRITANPIYNTPSSKFGLLDVPSRGVQE
        Q +LH+SVNF+D+FSSGFHQASAMNISPSEEATR                      +QNGITNQVRNTSPYSRRITANPIY+TPSS FGLLD PSRGVQE
Subjt:  QNSLHKSVNFEDMFSSGFHQASAMNISPSEEATR----------------------KQNGITNQVRNTSPYSRRITANPIYNTPSSKFGLLDVPSRGVQE

Query:  NGS-SKTAVPIGDNGTWNISSLDDPMDISSHGGVQDSAADIRYSNGAPRWRSDEASDEEEPSLDRVPSIVRHRATRSSTRRTRSTKR
        NGS +K  V I DNGTWN+SSLDDPMDISSHG VQDSA D RYSNGAPRWRSDEASDEEE SLDR  SIVRHR TRSSTRRTRSTKR
Subjt:  NGS-SKTAVPIGDNGTWNISSLDDPMDISSHGGVQDSAADIRYSNGAPRWRSDEASDEEEPSLDRVPSIVRHRATRSSTRRTRSTKR

XP_022972982.1 E3 ubiquitin-protein ligase HOS1-like [Cucurbita maxima]

4.2e-62

77.78

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Query:  NSLHKSVNFEDMFSSGFHQASAMNISPSEEATR----------------KQNGITNQVRNTSPYSRRITANPIYNTPSSKFGLLDVPSRGVQENGSSKTA
        NSLHKSV+F+DMFSSGFHQASAMNISPSEEATR                +QNGITNQVRNTSPYSRRITANP YNTP+ KFGLLDVPSRGVQENGS+K  
Subjt:  NSLHKSVNFEDMFSSGFHQASAMNISPSEEATR----------------KQNGITNQVRNTSPYSRRITANPIYNTPSSKFGLLDVPSRGVQENGSSKTA

Query:  VPIGDNGTWNISSLDDPMDISSHGGVQDSAADIRYSNGAPRWRSDEASDEEEPSLDRVPSIVRHRATRS-STRRTRSTKR
            DNGTWNISSLDDPMDISSHGG +DSAADI+YSNGAPRWRSDEASDEEE S DRVPS V HRAT S S+RRTR TKR
Subjt:  VPIGDNGTWNISSLDDPMDISSHGGVQDSAADIRYSNGAPRWRSDEASDEEEPSLDRVPSIVRHRATRS-STRRTRSTKR

XP_038907091.1 E3 ubiquitin-protein ligase HOS1 [Benincasa hispida]

6.9e-65

77.54

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Query:  QNSLHKSVNFEDMFSSGFHQASAMNISPSEEATR-----------------------KQNGITNQVRNTSPYSRRITANPIYNTPSSKFGLLDVPSRGVQ
        QNSL +SVNF+DMFSS FHQA+AMNISPSEEA R                       ++NGITNQVRNTSPYSRRITANP YNTPSSKFGLLDVP RGVQ
Subjt:  QNSLHKSVNFEDMFSSGFHQASAMNISPSEEATR-----------------------KQNGITNQVRNTSPYSRRITANPIYNTPSSKFGLLDVPSRGVQ

Query:  ENGSSKTAVPIGDNGTWNISSLDDPMDISSHGGVQDSAADIRYSNGAPRWRSDEASDEEEPSLDRVPSIVRHRATRSSTRRTRSTKR
        ENGS+KTAV I DNGTWNISSLDDPMDISSHGG +DSAADIRYSNGAPRWRSDEASD EEPSLDR PSIVR+RAT+SSTRRTRSTKR
Subjt:  ENGSSKTAVPIGDNGTWNISSLDDPMDISSHGGVQDSAADIRYSNGAPRWRSDEASDEEEPSLDRVPSIVRHRATRSSTRRTRSTKR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KKX8 ELYS domain-containing protein

5.3e-63

74.33

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Query:  QNSLHKSVNFEDMFSSGFHQASAMNISPSEEATR----------------------KQNGITNQVRNTSPYSRRITANPIYNTPSSKFGLLDVPSRGVQE
        Q +LH+SVNF+D+FSSGFHQASAMNISPSEEATR                      +Q G +NQVRNT PYSRRITANPIYNTPSS FGLLD PSRGVQE
Subjt:  QNSLHKSVNFEDMFSSGFHQASAMNISPSEEATR----------------------KQNGITNQVRNTSPYSRRITANPIYNTPSSKFGLLDVPSRGVQE

Query:  NGS-SKTAVPIGDNGTWNISSLDDPMDISSHGGVQDSAADIRYSNGAPRWRSDEASDEEEPSLDRVPSIVRHRATRSSTRRTRSTKR
        NGS +K AV   DNGTWN SSLDDPMDISSHG VQDSAAD RY NGAPRWRSDEASDEEEP LDR  SIVRHR TRSSTRRTRSTKR
Subjt:  NGS-SKTAVPIGDNGTWNISSLDDPMDISSHGGVQDSAADIRYSNGAPRWRSDEASDEEEPSLDRVPSIVRHRATRSSTRRTRSTKR

A0A1S3ASQ3 E3 ubiquitin-protein ligase HOS1

2.0e-65

75.94

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Query:  QNSLHKSVNFEDMFSSGFHQASAMNISPSEEATR----------------------KQNGITNQVRNTSPYSRRITANPIYNTPSSKFGLLDVPSRGVQE
        Q +LH+SVNF+D+FSSGFHQASAMNISPSEEATR                      +QNGITNQVRNTSPYSRRITANPIY+TPSS FGLLD PSRGVQE
Subjt:  QNSLHKSVNFEDMFSSGFHQASAMNISPSEEATR----------------------KQNGITNQVRNTSPYSRRITANPIYNTPSSKFGLLDVPSRGVQE

Query:  NGS-SKTAVPIGDNGTWNISSLDDPMDISSHGGVQDSAADIRYSNGAPRWRSDEASDEEEPSLDRVPSIVRHRATRSSTRRTRSTKR
        NGS +K  V I DNGTWN+SSLDDPMDISSHG VQDSA D RYSNGAPRWRSDEASDEEE SLDR  SIVRHR TRSSTRRTRSTKR
Subjt:  NGS-SKTAVPIGDNGTWNISSLDDPMDISSHGGVQDSAADIRYSNGAPRWRSDEASDEEEPSLDRVPSIVRHRATRSSTRRTRSTKR

A0A5A7T8D9 O-fucosyltransferase family protein

4.4e-65

75.81

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Query:  QNSLHKSVNFEDMFSSGFHQASAMNISPSEEATR----------------------KQNGITNQVRNTSPYSRRITANPIYNTPSSKFGLLDVPSRGVQE
        Q +LH+SVNF+D+FSSGFHQASAMNISPSEEATR                      +QNGITNQVRNTSPYSRRITANPIY+TPSS FGLLD PSRGVQE
Subjt:  QNSLHKSVNFEDMFSSGFHQASAMNISPSEEATR----------------------KQNGITNQVRNTSPYSRRITANPIYNTPSSKFGLLDVPSRGVQE

Query:  NGS-SKTAVPIGDNGTWNISSLDDPMDISSHGGVQDSAADIRYSNGAPRWRSDEASDEEEPSLDRVPSIVRHRATRSSTRRTRSTK
        NGS +K  V I DNGTWN+SSLDDPMDISSHG VQDSA D RYSNGAPRWRSDEASDEEE SLDR  SIVRHR TRSSTRRTRSTK
Subjt:  NGS-SKTAVPIGDNGTWNISSLDDPMDISSHGGVQDSAADIRYSNGAPRWRSDEASDEEEPSLDRVPSIVRHRATRSSTRRTRSTK

A0A6J1DW09 E3 ubiquitin-protein ligase HOS1

1.1e-60

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Query:  QNSLHKSVNFEDMFSSGFHQASAMNISPSEEATR--------------------KQNGITNQVRNTSPYSRRITANPIYNTPSSKFGLLDVPSRGVQENG
        QNSLHKSVNF+DMFSSGFHQASAMNISPSEEATR                    +QNGI NQVRNTSPYSRRITANPIY TPSSKFGLLDVPSRGVQENG
Subjt:  QNSLHKSVNFEDMFSSGFHQASAMNISPSEEATR--------------------KQNGITNQVRNTSPYSRRITANPIYNTPSSKFGLLDVPSRGVQENG

Query:  SSKTAVPIGDNGTWNISSLDDPMDISSHGGVQDSAADIRYSNGAPRWRSDEASDEEEPSLDRVPSIVRHRATRSSTRRTRSTKR
        SSKTAV   DNGTWNISSLDDPMD SSHGG QDSAAD+RY N APRWR+DEASD EE SL+R PS+VR+R     TRRTR +KR
Subjt:  SSKTAVPIGDNGTWNISSLDDPMDISSHGGVQDSAADIRYSNGAPRWRSDEASDEEEPSLDRVPSIVRHRATRSSTRRTRSTKR

A0A6J1I6A2 E3 ubiquitin-protein ligase HOS1-like

2.0e-62

77.78

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Query:  NSLHKSVNFEDMFSSGFHQASAMNISPSEEATR----------------KQNGITNQVRNTSPYSRRITANPIYNTPSSKFGLLDVPSRGVQENGSSKTA
        NSLHKSV+F+DMFSSGFHQASAMNISPSEEATR                +QNGITNQVRNTSPYSRRITANP YNTP+ KFGLLDVPSRGVQENGS+K  
Subjt:  NSLHKSVNFEDMFSSGFHQASAMNISPSEEATR----------------KQNGITNQVRNTSPYSRRITANPIYNTPSSKFGLLDVPSRGVQENGSSKTA

Query:  VPIGDNGTWNISSLDDPMDISSHGGVQDSAADIRYSNGAPRWRSDEASDEEEPSLDRVPSIVRHRATRS-STRRTRSTKR
            DNGTWNISSLDDPMDISSHGG +DSAADI+YSNGAPRWRSDEASDEEE S DRVPS V HRAT S S+RRTR TKR
Subjt:  VPIGDNGTWNISSLDDPMDISSHGGVQDSAADIRYSNGAPRWRSDEASDEEEPSLDRVPSIVRHRATRS-STRRTRSTKR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G39810.1 ubiquitin-protein ligases

2.5e-04

35.9

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Query:  SEEATRKQNGITNQVRN--TSPYSRRITA-NPIYNTPSSKFGLLDVPSRGVQENGSSKTAVPIGDNGTWNISSLDDPMDISSHGGVQDS-----AADIRY
        +EE++ + N +   + N  +SPY RRITA NP+  T  S    L+  S+  +         P  D    N   LDDPMD+SS   ++D+     A + R 
Subjt:  SEEATRKQNGITNQVRN--TSPYSRRITA-NPIYNTPSSKFGLLDVPSRGVQENGSSKTAVPIGDNGTWNISSLDDPMDISSHGGVQDS-----AADIRY

Query:  SNGAPRWRSDEASDEEE
        ++G  RWRSDE SD+E+
Subjt:  SNGAPRWRSDEASDEEE

Sequences

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CDS sequence

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ATGCAAAATAGCCTGCACAAGAGTGTCAATTTTGAGGACATGTTTAGTTCTGGATTCCATCAAGCAAGTGCTATGAACATTTCCCCCTCGGAAGAAGCCACGAGAAAGCA
AAATGGAATTACCAACCAAGTTCGGAATACCTCTCCGTATTCTCGTAGGATTACTGCTAACCCTATTTATAATACACCAAGCAGCAAGTTCGGTTTATTAGATGTTCCTT
CAAGGGGAGTGCAGGAAAATGGATCTTCTAAAACTGCAGTTCCTATTGGAGATAATGGAACTTGGAACATCTCTTCTTTAGATGATCCAATGGACATTTCAAGCCATGGA
GGAGTACAAGATTCTGCAGCTGACATTCGATATTCAAATGGTGCTCCAAGATGGAGGTCTGATGAAGCAAGCGACGAGGAGGAGCCAAGTCTTGACAGAGTTCCAAGCAT
AGTACGCCACAGAGCTACCCGAAGCAGTACTAGAAGAACAAGGTCAACCAAGAGATAA

mRNA sequence

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Protein sequence

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MQNSLHKSVNFEDMFSSGFHQASAMNISPSEEATRKQNGITNQVRNTSPYSRRITANPIYNTPSSKFGLLDVPSRGVQENGSSKTAVPIGDNGTWNISSLDDPMDISSHG
GVQDSAADIRYSNGAPRWRSDEASDEEEPSLDRVPSIVRHRATRSSTRRTRSTKR

Clc01G04540 (gene) of Watermelon (cordophanus) v2 genome