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Clc01G04600 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G04600
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPaired amphipathic helix protein Sin3-like 4
Genome locationClcChr01:4352603..4352878
RNA-Seq ExpressionClc01G04600
SyntenyClc01G04600
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003714 - transcription corepressor activity (molecular function)
InterPro domainsIPR003822 - Paired amphipathic helix
IPR036600 - Paired amphipathic helix superfamily
IPR039774 - Transcriptional regulatory protein Sin3-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151191.1 paired amphipathic helix protein Sin3-like 4 isoform X1 [Momordica charantia]3.9e-1754.17Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK
        MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ + A + D+F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK

XP_022151192.1 paired amphipathic helix protein Sin3-like 4 isoform X2 [Momordica charantia]3.9e-1754.17Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK
        MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ + A + D+F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK

XP_022151193.1 paired amphipathic helix protein Sin3-like 4 isoform X3 [Momordica charantia]3.9e-1754.17Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK
        MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ + A + D+F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK

XP_022943142.1 paired amphipathic helix protein Sin3-like 4 isoform X2 [Cucurbita moschata]1.1e-1653.12Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK
        MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ +   + D+F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK

XP_022943143.1 paired amphipathic helix protein Sin3-like 4 isoform X3 [Cucurbita moschata]1.1e-1653.12Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK
        MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ +   + D+F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK

TrEMBL top hitse value%identityAlignment
A0A6J1DBI6 paired amphipathic helix protein Sin3-like 4 isoform X31.9e-1754.17Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK
        MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ + A + D+F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK

A0A6J1DCT7 paired amphipathic helix protein Sin3-like 4 isoform X21.9e-1754.17Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK
        MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ + A + D+F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK

A0A6J1DDV1 paired amphipathic helix protein Sin3-like 4 isoform X11.9e-1754.17Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK
        MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ + A + D+F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK

A0A6J1FQW7 paired amphipathic helix protein Sin3-like 4 isoform X15.4e-1753.12Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK
        MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ +   + D+F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK

A0A6J1JXD3 paired amphipathic helix protein Sin3-like 4 isoform X15.4e-1753.12Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK
        MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ +   + D+F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK

SwissProt top hitse value%identityAlignment
O04539 Paired amphipathic helix protein Sin3-like 49.2e-1442.11Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP------AKPLEDDQHPPPQ
        M    S++KLT  +AL+Y+  V+++FQ+ R+K++ FL V++DFKAQRVDT+ +   + ++F+ + +LI+GF TFLP       +P EDDQ   P+
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP------AKPLEDDQHPPPQ

O48686 Paired amphipathic helix protein Sin3-like 37.1e-1440.43Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLPAK---PLEDDQHPPPQNK
        M   GS++KLT  +AL+Y+  V+++FQ+ R K++ FL V+++FK+QRVDT+ +   + ++F+ H +LI+GF TFLP      L+ +   PP  K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLPAK---PLEDDQHPPPQNK

Q9LFQ3 Paired amphipathic helix protein Sin3-like 22.1e-1346.48Show/hide
Query:  SSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP
        +++KLT  +AL+Y+  V+E FQ+ R+K++ FL V++DFKAQ+ DTS + + + ++F+ H +LI GF TFLP
Subjt:  SSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP

Q9SRH9 Paired amphipathic helix protein Sin3-like 11.1e-1452.05Show/hide
Query:  RGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP
        R  S+KLT  +ALSY+  V+E FQ+ REK++ FL V++DFKAQR DT  + A + ++F+ H +LI GF TFLP
Subjt:  RGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP

Q9XIE1 Paired amphipathic helix protein Sin3-like 51.1e-1450Show/hide
Query:  GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP
        G++  LT  +AL+Y+  V++ FQ+N+EK+E FL V++DFKAQRVDT+ + A + D+F+ + DL++GF TFLP
Subjt:  GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP

Arabidopsis top hitse value%identityAlignment
AT1G59890.1 SIN3-like 57.7e-1650Show/hide
Query:  GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP
        G++  LT  +AL+Y+  V++ FQ+N+EK+E FL V++DFKAQRVDT+ + A + D+F+ + DL++GF TFLP
Subjt:  GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP

AT1G59890.2 SIN3-like 57.7e-1650Show/hide
Query:  GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP
        G++  LT  +AL+Y+  V++ FQ+N+EK+E FL V++DFKAQRVDT+ + A + D+F+ + DL++GF TFLP
Subjt:  GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP

AT1G59890.3 SIN3-like 57.7e-1650Show/hide
Query:  GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP
        G++  LT  +AL+Y+  V++ FQ+N+EK+E FL V++DFKAQRVDT+ + A + D+F+ + DL++GF TFLP
Subjt:  GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP

AT1G59890.4 SIN3-like 57.7e-1650Show/hide
Query:  GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP
        G++  LT  +AL+Y+  V++ FQ+N+EK+E FL V++DFKAQRVDT+ + A + D+F+ + DL++GF TFLP
Subjt:  GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP

AT3G01320.1 SIN3-like 17.7e-1652.05Show/hide
Query:  RGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP
        R  S+KLT  +ALSY+  V+E FQ+ REK++ FL V++DFKAQR DT  + A + ++F+ H +LI GF TFLP
Subjt:  RGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAACGAGGAAGTTCCGAGAAGTTAACCATTACGGAAGCCCTATCATATATCATGAGAGTGAGGGAAAGATTTCAAGAAAACCGGGAAAAGTTTGAAGCTTTCCT
TCGAGTAATCCAAGATTTCAAGGCCCAAAGAGTTGATACTTCGGAACTCTTTGCAACAATAATGGACATGTTTCAAGACCACCCAGATCTTATTATGGGCTTCGCTACTT
TCTTGCCCGCAAAACCCCTGGAGGATGATCAACATCCACCTCCACAAAACAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAACGAGGAAGTTCCGAGAAGTTAACCATTACGGAAGCCCTATCATATATCATGAGAGTGAGGGAAAGATTTCAAGAAAACCGGGAAAAGTTTGAAGCTTTCCT
TCGAGTAATCCAAGATTTCAAGGCCCAAAGAGTTGATACTTCGGAACTCTTTGCAACAATAATGGACATGTTTCAAGACCACCCAGATCTTATTATGGGCTTCGCTACTT
TCTTGCCCGCAAAACCCCTGGAGGATGATCAACATCCACCTCCACAAAACAAATAA
Protein sequenceShow/hide protein sequence
MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFATIMDMFQDHPDLIMGFATFLPAKPLEDDQHPPPQNK