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Clc01G04780 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G04780
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description60S ribosomal protein L36
Genome locationClcChr01:4478256..4480841
RNA-Seq ExpressionClc01G04780
SyntenyClc01G04780
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000509 - Ribosomal protein L36e
IPR038097 - Ribosomal protein L36e domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3946989.1 hypothetical protein CMV_026816, partial [Castanea mollissima]2.3e-4995.54Show/hide
Query:  QVMAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLR
        +VMAPKQPNTGLFVG N+GH+VTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLR
Subjt:  QVMAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLR

Query:  KMRAGGGGEKKK
        KMR+GGGGEKKK
Subjt:  KMRAGGGGEKKK

KAG6574185.1 60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia]7.7e-5095.58Show/hide
Query:  EQVMAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVL
        E+ MAPKQPNTGLFVGLNKGH+VTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VL
Subjt:  EQVMAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVL

Query:  RKMRAGGGGEKKK
        RKMRAGGGGEKKK
Subjt:  RKMRAGGGGEKKK

KAG6576718.1 60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia]1.3e-4993.91Show/hide
Query:  LIEQVMAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSN
        L E+ MAPKQPNTGLFVGLNKGH+VTKKELAPRPSDRKGK+SKRVLFVR+LIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+
Subjt:  LIEQVMAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSN

Query:  VLRKMRAGGGGEKKK
        VLRKMRAGGGGEKKK
Subjt:  VLRKMRAGGGGEKKK

KAG6579388.1 60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia]1.3e-5298.28Show/hide
Query:  RLIEQVMAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS
        RLIEQVMAPKQPNTGLFVGLNKGH+VTKKELAPRPSDRKGK SKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS
Subjt:  RLIEQVMAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS

Query:  NVLRKMRAGGGGEKKK
        NVLRKMRAGGGGEKKK
Subjt:  NVLRKMRAGGGGEKKK

XP_022922109.1 60S ribosomal protein L36-2-like [Cucurbita moschata]1.7e-4998.18Show/hide
Query:  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM
        MAPKQPNTGLFVGLNKGH+VTKKELAPRPSDRKGK SKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM
Subjt:  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM

Query:  RAGGGGEKKK
        RAGGGGEKKK
Subjt:  RAGGGGEKKK

TrEMBL top hitse value%identityAlignment
A0A4V6A9C3 60S ribosomal protein L361.9e-4993.86Show/hide
Query:  IEQVMAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNV
        + Q MAPKQPNTGLFVGLNKGHVVTKK+LAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSNV
Subjt:  IEQVMAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNV

Query:  LRKMRAGGGGEKKK
        LRKMRA GGGEKKK
Subjt:  LRKMRAGGGGEKKK

A0A6J1CID5 60S ribosomal protein L361.9e-4998.18Show/hide
Query:  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM
        MAPKQPN+GLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKM
Subjt:  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM

Query:  RAGGGGEKKK
        RAGGGGEKKK
Subjt:  RAGGGGEKKK

A0A6J1E2F7 60S ribosomal protein L368.3e-5098.18Show/hide
Query:  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM
        MAPKQPNTGLFVGLNKGH+VTKKELAPRPSDRKGK SKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM
Subjt:  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM

Query:  RAGGGGEKKK
        RAGGGGEKKK
Subjt:  RAGGGGEKKK

A0A6J1IDA3 60S ribosomal protein L368.3e-5098.18Show/hide
Query:  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM
        MAPKQPNTGLFVGLNKGH+VTKKELAPRPSDRKGK SKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM
Subjt:  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM

Query:  RAGGGGEKKK
        RAGGGGEKKK
Subjt:  RAGGGGEKKK

W9SA20 60S ribosomal protein L361.1e-4999.09Show/hide
Query:  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM
        MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRV FVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM
Subjt:  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM

Query:  RAGGGGEKKK
        RAGGGGEKKK
Subjt:  RAGGGGEKKK

SwissProt top hitse value%identityAlignment
O80929 60S ribosomal protein L36-11.3e-3983.81Show/hide
Query:  TGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGG--
        TGLFVGLNKGHVVT++ELAPRP+ RKGKTSKR +F+R LIREVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+ GG  
Subjt:  TGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGG--

Query:  -GEKK
          EKK
Subjt:  -GEKK

P52866 60S ribosomal protein L361.4e-3382.42Show/hide
Query:  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE
        MAPKQPNTGLFVGLNKGH+VTKKELAPRPSDRKGKTSKR  FVR+LIREVAGF PYEKRITELLKVGKDKRALKV + K+G H +  K+ E
Subjt:  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE

Q9LRB8 60S ribosomal protein L361.0e-2871.88Show/hide
Query:  VGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGE
        VGLNKGH VTKK   PRPS RKG  S+RV  VR+++REVAG+APYE+R+ ELLKVGKDKRALK+ KRKLGTH R KKKREEM+ VLRKM+A   GE
Subjt:  VGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGE

Q9LZ57 60S ribosomal protein L36-35.8e-4083.81Show/hide
Query:  TGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGG-
        TGLFVGLNKGHVVTK+E  PRP++RKGKTSKR +F+R+LI+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+GG G 
Subjt:  TGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGG-

Query:  -EKKK
         EKKK
Subjt:  -EKKK

Q9M352 60S ribosomal protein L36-26.2e-4282.14Show/hide
Query:  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM
        M   Q  TGLFVGLNKGHVVT++ELAPRP  RKGKTSKR +F+R+LI+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKM
Subjt:  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM

Query:  RAGGGG--EKKK
        R+GGGG  EKKK
Subjt:  RAGGGG--EKKK

Arabidopsis top hitse value%identityAlignment
AT2G37600.1 Ribosomal protein L36e family protein9.1e-4183.81Show/hide
Query:  TGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGG--
        TGLFVGLNKGHVVT++ELAPRP+ RKGKTSKR +F+R LIREVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+ GG  
Subjt:  TGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGG--

Query:  -GEKK
          EKK
Subjt:  -GEKK

AT3G53740.2 Ribosomal protein L36e family protein4.4e-4382.14Show/hide
Query:  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM
        M   Q  TGLFVGLNKGHVVT++ELAPRP  RKGKTSKR +F+R+LI+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKM
Subjt:  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM

Query:  RAGGGG--EKKK
        R+GGGG  EKKK
Subjt:  RAGGGG--EKKK

AT3G53740.3 Ribosomal protein L36e family protein4.4e-4382.14Show/hide
Query:  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM
        M   Q  TGLFVGLNKGHVVT++ELAPRP  RKGKTSKR +F+R+LI+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKM
Subjt:  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM

Query:  RAGGGG--EKKK
        R+GGGG  EKKK
Subjt:  RAGGGG--EKKK

AT3G53740.4 Ribosomal protein L36e family protein4.4e-4382.14Show/hide
Query:  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM
        M   Q  TGLFVGLNKGHVVT++ELAPRP  RKGKTSKR +F+R+LI+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKM
Subjt:  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKM

Query:  RAGGGG--EKKK
        R+GGGG  EKKK
Subjt:  RAGGGG--EKKK

AT5G02450.1 Ribosomal protein L36e family protein4.1e-4183.81Show/hide
Query:  TGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGG-
        TGLFVGLNKGHVVTK+E  PRP++RKGKTSKR +F+R+LI+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+GG G 
Subjt:  TGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGG-

Query:  -EKKK
         EKKK
Subjt:  -EKKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCTCGCTTTCGCTCTCGCTCTTACTTCCTTTCCTCGCTGACAATCAATCTTATCTCTCTTGCTCTCTCTCACTCTTGCTCATTGGAATTGGTTGCGTTGGAGTT
TCGAGTCGTCAGACTCATAGAACAGGTAATGGCTCCAAAACAGCCGAATACAGGCCTTTTTGTTGGGCTGAACAAGGGCCACGTAGTCACCAAGAAGGAGTTGGCCCCAC
GACCCTCCGATCGGAAAGGAAAAACAAGTAAAAGGGTTCTTTTTGTCCGGAGTTTGATCCGGGAAGTTGCTGGGTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTG
AAAGTTGGAAAGGACAAGCGTGCTCTGAAGGTAGCCAAAAGAAAGCTTGGAACTCACAAGAGAGCTAAAAAGAAGCGTGAGGAAATGTCCAATGTTCTAAGAAAAATGAG
GGCCGGTGGAGGTGGTGAGAAGAAGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTCTCGCTTTCGCTCTCGCTCTTACTTCCTTTCCTCGCTGACAATCAATCTTATCTCTCTTGCTCTCTCTCACTCTTGCTCATTGGAATTGGTTGCGTTGGAGTT
TCGAGTCGTCAGACTCATAGAACAGGTAATGGCTCCAAAACAGCCGAATACAGGCCTTTTTGTTGGGCTGAACAAGGGCCACGTAGTCACCAAGAAGGAGTTGGCCCCAC
GACCCTCCGATCGGAAAGGAAAAACAAGTAAAAGGGTTCTTTTTGTCCGGAGTTTGATCCGGGAAGTTGCTGGGTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTG
AAAGTTGGAAAGGACAAGCGTGCTCTGAAGGTAGCCAAAAGAAAGCTTGGAACTCACAAGAGAGCTAAAAAGAAGCGTGAGGAAATGTCCAATGTTCTAAGAAAAATGAG
GGCCGGTGGAGGTGGTGAGAAGAAGAAGTGA
Protein sequenceShow/hide protein sequence
MFSRFRSRSYFLSSLTINLISLALSHSCSLELVALEFRVVRLIEQVMAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELL
KVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK