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Clc01G05280 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G05280
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionlate embryogenesis abundant protein At5g17165-like
Genome locationClcChr01:4895662..4899534
RNA-Seq ExpressionClc01G05280
SyntenyClc01G05280
Gene Ontology termsNA
InterPro domainsIPR039291 - Late embryogenesis abundant protein At5g17165-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055104.1 uncharacterized protein E6C27_scaffold231G00300 [Cucumis melo var. makuwa]3.2e-3360.14Show/hide
Query:  MAASWKII-------AAPRFLLSSSPSPTFRLRSNDNYDQARLFVGFRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNS
        MA S KII       AAPR  L  S SP     +N          GFR SHWS YEKN E+ IWPT+V + VIH NL +NYW PHP+TGVFGPP AHH+S
Subjt:  MAASWKII-------AAPRFLLSSSPSPTFRLRSNDNYDQARLFVGFRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNS

Query:  AAL-NDTSAGGKE-DSILDLKAWFRHNALEDLEKPHSL
        + L NDTSAGG E  S+L+LKAWFRHN LEDLEKPHSL
Subjt:  AAL-NDTSAGGKE-DSILDLKAWFRHNALEDLEKPHSL

KAE8647930.1 hypothetical protein Csa_000491 [Cucumis sativus]4.6e-3271.43Show/hide
Query:  FRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAAL-NDTSAGGKEDSILDLKAWFRHNALEDLEKPHSL
        FR+SHWS YEKN E+QIWPT+V +H+I  +L E+YW PHP+TGVFGPP AHHNS+ + NDTSAGG E S+L+LKAWFRHN LEDLEKPH+L
Subjt:  FRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAAL-NDTSAGGKEDSILDLKAWFRHNALEDLEKPHSL

XP_004143665.1 late embryogenesis abundant protein At5g17165 [Cucumis sativus]1.1e-3359.23Show/hide
Query:  MAASWKIIAAPRFLLSSSPSPTFRLRSNDNYDQARLFVGFRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAAL-NDT
        MA S KII A     +++ SP   L     Y       GFR+SHWS YEKN E+QIWPT+V +H+I  +L E+YW PHP+TGVFGPP AHHNS+ + NDT
Subjt:  MAASWKIIAAPRFLLSSSPSPTFRLRSNDNYDQARLFVGFRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAAL-NDT

Query:  SAGGKEDSILDLKAWFRHNALEDLEKPHSL
        SAGG E S+L+LKAWFRHN LEDLEKPH+L
Subjt:  SAGGKEDSILDLKAWFRHNALEDLEKPHSL

XP_016903720.1 PREDICTED: uncharacterized protein LOC103504694 [Cucumis melo]1.3e-3463.93Show/hide
Query:  AAPRFLLSSSPSPTFRLRSNDNYDQARLFVGFRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAAL-NDTSAGGKEDS
        AAPR  L  S SP     +N          GFR SHWS YEKN E+ IWPT+V + VIH NL +NYW PHP+TGVFGPP AHHNS+ L NDTSAGG E S
Subjt:  AAPRFLLSSSPSPTFRLRSNDNYDQARLFVGFRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAAL-NDTSAGGKEDS

Query:  ILDLKAWFRHNALEDLEKPHSL
        +L+LKAWFRHN LEDLEKPHSL
Subjt:  ILDLKAWFRHNALEDLEKPHSL

XP_038875585.1 late embryogenesis abundant protein At5g17165-like [Benincasa hispida]9.3e-4168.75Show/hide
Query:  MAASWK-IIAAPRFLLSSSPSPTFRLRSNDNYDQARLFVGFRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAAL-ND
        MA+SW+ IIA+PRFLLSS PS      S+ +   +  F+  R SHWS YEKN EEQIWPTVV DHVIH N+ ENYWAPHP+TGVFGPPIAH +++A+ ND
Subjt:  MAASWK-IIAAPRFLLSSSPSPTFRLRSNDNYDQARLFVGFRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAAL-ND

Query:  TSAGGKEDSILDLKAWFRHNALEDLEKP
        TSAGGKEDS+LD+KAWFRHN LEDLEKP
Subjt:  TSAGGKEDSILDLKAWFRHNALEDLEKP

TrEMBL top hitse value%identityAlignment
A0A0A0KRJ5 Uncharacterized protein5.3e-3459.23Show/hide
Query:  MAASWKIIAAPRFLLSSSPSPTFRLRSNDNYDQARLFVGFRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAAL-NDT
        MA S KII A     +++ SP   L     Y       GFR+SHWS YEKN E+QIWPT+V +H+I  +L E+YW PHP+TGVFGPP AHHNS+ + NDT
Subjt:  MAASWKIIAAPRFLLSSSPSPTFRLRSNDNYDQARLFVGFRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAAL-NDT

Query:  SAGGKEDSILDLKAWFRHNALEDLEKPHSL
        SAGG E S+L+LKAWFRHN LEDLEKPH+L
Subjt:  SAGGKEDSILDLKAWFRHNALEDLEKPHSL

A0A1S4E6U6 uncharacterized protein LOC1035046946.3e-3563.93Show/hide
Query:  AAPRFLLSSSPSPTFRLRSNDNYDQARLFVGFRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAAL-NDTSAGGKEDS
        AAPR  L  S SP     +N          GFR SHWS YEKN E+ IWPT+V + VIH NL +NYW PHP+TGVFGPP AHHNS+ L NDTSAGG E S
Subjt:  AAPRFLLSSSPSPTFRLRSNDNYDQARLFVGFRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAAL-NDTSAGGKEDS

Query:  ILDLKAWFRHNALEDLEKPHSL
        +L+LKAWFRHN LEDLEKPHSL
Subjt:  ILDLKAWFRHNALEDLEKPHSL

A0A5A7UIY1 Uncharacterized protein1.5e-3360.14Show/hide
Query:  MAASWKII-------AAPRFLLSSSPSPTFRLRSNDNYDQARLFVGFRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNS
        MA S KII       AAPR  L  S SP     +N          GFR SHWS YEKN E+ IWPT+V + VIH NL +NYW PHP+TGVFGPP AHH+S
Subjt:  MAASWKII-------AAPRFLLSSSPSPTFRLRSNDNYDQARLFVGFRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNS

Query:  AAL-NDTSAGGKE-DSILDLKAWFRHNALEDLEKPHSL
        + L NDTSAGG E  S+L+LKAWFRHN LEDLEKPHSL
Subjt:  AAL-NDTSAGGKE-DSILDLKAWFRHNALEDLEKPHSL

A0A6J1H0D3 late embryogenesis abundant protein At5g17165-like9.4e-2354.1Show/hide
Query:  MAASWKIIAAPRFLLSSSPSPTFRLRSNDNYDQARLFVGFRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAALNDTS
        MAA+  +I A R  L+   +P  RL  +       LF   R  HWS YEKN EE++ PTVV DH+IH +L E+YWAPHP+TGVFGPPI  HN    +DTS
Subjt:  MAASWKIIAAPRFLLSSSPSPTFRLRSNDNYDQARLFVGFRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAALNDTS

Query:  AGG-KEDSILDLKAWFRHNALE
        AGG KE S+L+LK WFRH  LE
Subjt:  AGG-KEDSILDLKAWFRHNALE

A0A6J1K564 late embryogenesis abundant protein At5g17165-like1.8e-2654.62Show/hide
Query:  MAASWKIIAAPRFLLSSSPSPTFRLRSNDNYDQARLFVGFRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAALNDTS
        MAA+  +I A R  L+   +P  RL  +       LF   R  HWS YEKN EE++ PTVV DH+IH ++ E+YWAPHP+TGVFGPPI+ HN    +DTS
Subjt:  MAASWKIIAAPRFLLSSSPSPTFRLRSNDNYDQARLFVGFRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAALNDTS

Query:  AGG-KEDSILDLKAWFRHNALEDLEKPHSL
        AGG KE S+L+LK WFRH  LED EKPH L
Subjt:  AGG-KEDSILDLKAWFRHNALEDLEKPHSL

SwissProt top hitse value%identityAlignment
F4KFM8 Late embryogenesis abundant protein At5g171651.1e-1748.28Show/hide
Query:  RTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAALNDTSAGGKEDSILDLKAWFRHNALEDLEKPH
        R  H S Y+KN+EE++ P+ V D +I P+  + YW+PHP+TGVFGP  +  N+    D   GG+EDS+++ KAWFR  +LEDL+K H
Subjt:  RTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAALNDTSAGGKEDSILDLKAWFRHNALEDLEKPH

Arabidopsis top hitse value%identityAlignment
AT3G03150.1 unknown protein2.9e-1637.39Show/hide
Query:  LLSSSPSPTFRLRSNDNYDQARLFVGFRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAALNDTSAGGKED-SILDLK
        L++S        R++     + LF   R+ H S Y+KN+E+++  + V D VI P+  + YW+PHPKTGVFGP    H++     T+ G  +D ++L+  
Subjt:  LLSSSPSPTFRLRSNDNYDQARLFVGFRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAALNDTSAGGKED-SILDLK

Query:  AWFRHNALEDLEKPH
        AWFR  +LED +K H
Subjt:  AWFRHNALEDLEKPH

AT5G17165.1 unknown protein8.1e-1948.28Show/hide
Query:  RTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAALNDTSAGGKEDSILDLKAWFRHNALEDLEKPH
        R  H S Y+KN+EE++ P+ V D +I P+  + YW+PHP+TGVFGP  +  N+    D   GG+EDS+++ KAWFR  +LEDL+K H
Subjt:  RTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAALNDTSAGGKEDSILDLKAWFRHNALEDLEKPH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCAGCTGGAAGATTATTGCTGCTCCACGATTCTTACTTTCGTCGTCCCCCTCTCCTACTTTCCGCCTCCGGTCAAATGATAACTACGACCAAGCTCGTTTGTT
TGTTGGTTTTAGGACAAGTCATTGGTCAACATATGAGAAGAACCTAGAGGAGCAAATATGGCCCACAGTGGTAACGGACCATGTGATCCATCCTAATCTATATGAAAACT
ATTGGGCCCCACATCCTAAAACGGGAGTTTTTGGGCCACCAATAGCCCACCACAATTCTGCAGCTCTGAACGATACGTCAGCTGGTGGTAAGGAGGATTCAATTCTAGAC
CTCAAGGCTTGGTTCCGACATAACGCCCTCGAAGATCTTGAGAAACCACACTCTCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATATAGTTCCATCAATATTGAGTTATTTATGCATGGCCGCCAGCTGGAAGATTATTGCTGCTCCACGATTCTTACTTTCGTCGTCCCCCTCTCCTACTTTCCGCCTCCGG
TCAAATGATAACTACGACCAAGCTCGTTTGTTTGTTGGTTTTAGGACAAGTCATTGGTCAACATATGAGAAGAACCTAGAGGAGCAAATATGGCCCACAGTGGTAACGGA
CCATGTGATCCATCCTAATCTATATGAAAACTATTGGGCCCCACATCCTAAAACGGGAGTTTTTGGGCCACCAATAGCCCACCACAATTCTGCAGCTCTGAACGATACGT
CAGCTGGTGGTAAGGAGGATTCAATTCTAGACCTCAAGGCTTGGTTCCGACATAACGCCCTCGAAGATCTTGAGAAACCACACTCTCTCTAA
Protein sequenceShow/hide protein sequence
MAASWKIIAAPRFLLSSSPSPTFRLRSNDNYDQARLFVGFRTSHWSTYEKNLEEQIWPTVVTDHVIHPNLYENYWAPHPKTGVFGPPIAHHNSAALNDTSAGGKEDSILD
LKAWFRHNALEDLEKPHSL